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Dunlop D, Horváth P, Klán P, Slanina T, Šebej P. Central Ring Puckering Enhances the Stokes Shift of Xanthene Dyes. Chemistry 2024; 30:e202400024. [PMID: 38197554 DOI: 10.1002/chem.202400024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 01/05/2024] [Accepted: 01/08/2024] [Indexed: 01/11/2024]
Abstract
Small-molecule dyes are generally designed based on well-understood electronic effects. However, steric hindrance can promote excited-state geometric relaxation, increasing the difference between the positions of absorption and emission bands (the Stokes shift). Accordingly, we hypothesized that sterically induced central ring puckering in xanthene dyes could be used to systematically increase their Stokes shift. Through a combined experimental/quantum-chemical approach, we screened a group of (9-acylimino)-pyronin dyes with a perturbed central ring geometry. Our results showed that an atom with sp3 hybridization in position 10 of (9-acylimino)-pyronins induces central ring puckering and facilitates excited-state geometric relaxation, thereby markedly enhancing their Stokes shifts (by up to ~2000 cm-1). Thus, we prepared fluorescent (9-acylimino)-pyronin pH sensors, which showed a Stokes shift disparity between acid and base forms of up to ~8700 cm-1. Moreover, the concept of ring puckering-enhanced Stokes shift can be applied to a wide range of xanthene analogues found in the literature. Therefore, central ring puckering may be reliably used as a strategy for enhancing Stokes shifts in the rational design of dyes.
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Affiliation(s)
- David Dunlop
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, Prague 6, 160 00, Czech Republic
- Department of Inorganic Chemistry, Faculty of Science, Charles University, Hlavova 2030, Prague 2, 128 40, Czech Republic
| | - Peter Horváth
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
| | - Petr Klán
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
- RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
| | - Tomáš Slanina
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, Prague 6, 160 00, Czech Republic
| | - Peter Šebej
- RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
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2
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Zhou G, Finney N, Wang Y. Desulfitative Sonogashira cross-coupling of thiopyronin for the synthesis of NIR arylacetylene-containing rhodamines. Chem Commun (Camb) 2024; 60:3039-3042. [PMID: 38376450 DOI: 10.1039/d3cc05995b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
A classical, safe and efficient red-shift strategy contributing to NIR arylacetylene-containing rhodamines has been developed via the desulfitative Sonogashira cross-coupling reaction of thiopyronin for the first time, exhibiting a broad substrate scope with good yields. In addition, compound 3m shows great potential for application as a singlet oxygen probe, demonstrating the practicality of the method.
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Affiliation(s)
- Guangshuai Zhou
- School of Pharmaceutical Sciences and Technology, Health Sciences Platform, Tianjin University, 92 Weijin Road, Nankai District, Tianjin, 300072, China.
| | - Nathaniel Finney
- School of Pharmaceutical Sciences and Technology, Health Sciences Platform, Tianjin University, 92 Weijin Road, Nankai District, Tianjin, 300072, China.
| | - Yali Wang
- Department of Chemistry, College of Pharmacy, North China University of Science and Technology, Tang Shan, P. R. China.
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3
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Peñas-Defrutos MN, Vélez A, Espinet P. Reactivity of Fluorinated-Chalcone Phosphines, RPEWO-F 4, Induced by C–F Activation upon Coordination to PdCl 2. Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marconi N. Peñas-Defrutos
- IU CINQUIMA/Quı́mica Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47071 Valladolid, Spain
| | - Andrea Vélez
- IU CINQUIMA/Quı́mica Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47071 Valladolid, Spain
| | - Pablo Espinet
- IU CINQUIMA/Quı́mica Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47071 Valladolid, Spain
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4
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Zhou X, Zeng Y, Liyan C, Wu X, Yoon J. A Fluorescent Sensor for Dual-Channel Discrimination between Phosgene and a Nerve-Gas Mimic. Angew Chem Int Ed Engl 2016; 55:4729-33. [PMID: 26938275 DOI: 10.1002/anie.201601346] [Citation(s) in RCA: 132] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Indexed: 12/21/2022]
Abstract
The ability to analyze highly toxic chemical warfare agents (CWAs) and related chemicals in a rapid and precise manner is essential in order to alleviate serious threats to humankind and public security caused by unexpected terrorist attacks and industrial accidents. In this investigation, we designed a o-phenylenediamine-pyronin linked dye that is capable of both fluorogenic and colorimetric discrimination between phosgene and the prototypical nerve-agent mimic, diethyl chlorophosphate (DCP) in the solution or gas phase. Moreover, this dye has been used to construct a portable kit that can be employed for real-time monitoring of DCP and phosgene in the field, both in a discriminatory manner, and in a simple and safe way.
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Affiliation(s)
- Xin Zhou
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul, 120-750, Korea.,Key Laboratory of Natural Resources of Changbai Mountain & Functional Molecules, Ministry of Education, Yanbian University, Yanji, 133-002, China
| | - Yiying Zeng
- Key Laboratory of Natural Resources of Changbai Mountain & Functional Molecules, Ministry of Education, Yanbian University, Yanji, 133-002, China
| | - Chen Liyan
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul, 120-750, Korea
| | - Xue Wu
- Key Laboratory of Natural Resources of Changbai Mountain & Functional Molecules, Ministry of Education, Yanbian University, Yanji, 133-002, China.
| | - Juyoung Yoon
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul, 120-750, Korea.
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5
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Zhou X, Zeng Y, Liyan C, Wu X, Yoon J. A Fluorescent Sensor for Dual‐Channel Discrimination between Phosgene and a Nerve‐Gas Mimic. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201601346] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Xin Zhou
- Department of Chemistry and Nano Science Ewha Womans University Seoul 120-750 Korea
- Key Laboratory of Natural Resources of Changbai Mountain & Functional Molecules Ministry of Education Yanbian University Yanji 133-002 China
| | - Yiying Zeng
- Key Laboratory of Natural Resources of Changbai Mountain & Functional Molecules Ministry of Education Yanbian University Yanji 133-002 China
| | - Chen Liyan
- Department of Chemistry and Nano Science Ewha Womans University Seoul 120-750 Korea
| | - Xue Wu
- Key Laboratory of Natural Resources of Changbai Mountain & Functional Molecules Ministry of Education Yanbian University Yanji 133-002 China
| | - Juyoung Yoon
- Department of Chemistry and Nano Science Ewha Womans University Seoul 120-750 Korea
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Minami Y, Shiraishi Y, Kodama T, Kanda M, Yamada K, Anami T, Hiyama T. Alkynoxy-Directed C–H Functionalizations: Palladium(0)-Catalyzed Annulations of Alkynyl Aryl Ethers with Alkynes. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2015. [DOI: 10.1246/bcsj.20150180] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yasunori Minami
- Research and Development Initiative, Chuo University
- JST, ACT-C
| | | | | | - Mayuko Kanda
- Department of Applied Chemistry, Chuo University
| | | | | | - Tamejiro Hiyama
- Research and Development Initiative, Chuo University
- JST, ACT-C
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7
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Maeta N, Yamamoto J, Fuku-en SI, Shang R, Yamamoto Y. Synthesis of New Dipyrido-AnnulatedN-Heterocyclic Carbenes with Aryl Substituents. Z Anorg Allg Chem 2015. [DOI: 10.1002/zaac.201500565] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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8
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Oxidative C-H-Funktionalisierung und Ringerweiterung mit TMSCHN2: ein Kupfer(I)-katalysierter Zugang zu Dibenzoxepinen und Dibenzazepinen. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201411726] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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9
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Stopka T, Marzo L, Zurro M, Janich S, Würthwein EU, Daniliuc CG, Alemán J, Mancheño OG. Oxidative CH Bond Functionalization and Ring Expansion with TMSCHN2: A Copper(I)-Catalyzed Approach to Dibenzoxepines and Dibenzoazepines. Angew Chem Int Ed Engl 2015; 54:5049-53. [DOI: 10.1002/anie.201411726] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Indexed: 12/14/2022]
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Sugawara S, Abe M, Fujiwara Y, Wakioka M, Ozawa F, Yamamoto Y. 1,8‐Disubstituted Xanthylidene‐Based Remote Carbenes: Photolytic Generation and Isolation of Low‐Coordinate Palladium(II) Complex. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201403017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Shun Sugawara
- Department of Chemistry, Graduate School of Science, Hiroshima University, 1‐3‐1 Kagamiyama, Higashi‐Hiroshima 739‐8526, Japan, http://home.hiroshima‐u.ac.jp/hetero2/
| | - Manabu Abe
- Department of Chemistry, Graduate School of Science, Hiroshima University, 1‐3‐1 Kagamiyama, Higashi‐Hiroshima 739‐8526, Japan, http://home.hiroshima‐u.ac.jp/hetero2/
| | - Yoshihisa Fujiwara
- Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, 1‐3‐1 Kagamiyama, Higashi‐Hiroshima 739‐8526, Japan
| | - Masayuki Wakioka
- International Research Center for Elements Science (IRCELS), Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611‐0011, Japan
| | - Fumiyuki Ozawa
- International Research Center for Elements Science (IRCELS), Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611‐0011, Japan
| | - Yohsuke Yamamoto
- Department of Chemistry, Graduate School of Science, Hiroshima University, 1‐3‐1 Kagamiyama, Higashi‐Hiroshima 739‐8526, Japan, http://home.hiroshima‐u.ac.jp/hetero2/
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Horváth P, Šebej P, Šolomek T, Klán P. Small-Molecule Fluorophores with Large Stokes Shifts: 9-Iminopyronin Analogues as Clickable Tags. J Org Chem 2014; 80:1299-311. [DOI: 10.1021/jo502213t] [Citation(s) in RCA: 75] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Peter Horváth
- Department
of Chemistry and
RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Peter Šebej
- Department
of Chemistry and
RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Tomáš Šolomek
- Department
of Chemistry and
RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Petr Klán
- Department
of Chemistry and
RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
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12
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Fuku-en SI, Yamamoto J, Kojima S, Yamamoto Y. Synthesis and Application of New Dipyrido-annulated N-Heterocyclic Carbene with Phosphorus Substituents. CHEM LETT 2014. [DOI: 10.1246/cl.131074] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Shin-ichi Fuku-en
- Department of Chemistry, Graduate School of Science, Hiroshima University
| | - Junki Yamamoto
- Department of Chemistry, Graduate School of Science, Hiroshima University
| | - Satoshi Kojima
- Department of Chemistry, Graduate School of Science, Hiroshima University
| | - Yohsuke Yamamoto
- Department of Chemistry, Graduate School of Science, Hiroshima University
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13
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Zeng Y, Feng H, Xie Y, Schaefer HF. Tuning effects for some cyclic aromatic carbenes bearing remote amino groups. J Org Chem 2014; 79:2926-33. [PMID: 24606014 DOI: 10.1021/jo402841h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Yamamoto and co-workers synthesized two cyclic aromatic carbenes with remote amino groups. Here we theoretically studied related compounds to explore tuning effects on the singlet-triplet splitting by variations of functional groups. For the Yamamoto compound, the lowest singlet state lies 15.7 kcal/mol below the lowest triplet. The singlet-triplet separation is reduced by ∼7 kcal/mol when the dimethylamino groups are replaced by H. In one set of carbenes, when X = O, we substitute S, Se, Te, SO, SeO, and TeO for X; the resulting ΔE(S-T) predictions are 9.9, 7.3, 3.9, 4.3, 2.3, and -0.1 kcal/mol, respectively. A different set of X fragments yields triplet electronic ground states with ΔE(S-T) values of -8.6 (X = BH), -6.8 (X = AlH), -7.2 (X = GaH), -7.5 (X = InH), and -7.0 kcal/mol (X = TlH). We also predicted ΔE(S-T) with N(CH3)2 replaced by PH2, AsH2, SbH2, BiH2, BH2, CH3, OH, and F. Of all the molecules considered, that with N(CH3)2 replaced with BH2 and X = BH most favors the triplet state, lying 13.7 kcal/mol below the singlet. Finally, we have relocated the N(CH3)2 and NH2 groups from the (3, 6) positions to the (4, 5), (2, 7), and (1, 8) terminal ring positions, with very interesting results.
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Affiliation(s)
- Yi Zeng
- Research Center for Advanced Computation, School of Physics and Chemistry, Xihua University , Chengdu, China 610039
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14
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Fuku-en SI, Yamamoto J, Minoura M, Kojima S, Yamamoto Y. Synthesis of New Dipyrido-Annulated N-Heterocyclic Carbenes with Ortho Substituents. Inorg Chem 2013; 52:11700-2. [DOI: 10.1021/ic402301u] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shin-ichi Fuku-en
- Department of Chemistry,
Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
| | - Junki Yamamoto
- Department of Chemistry,
Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
| | - Mao Minoura
- Department of Chemistry, Graduate School
of Science, Rikkyo University, 3-34-1 Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Satoshi Kojima
- Department of Chemistry,
Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
| | - Yohsuke Yamamoto
- Department of Chemistry,
Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
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15
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Ung G, Soleilhavoup M, Bertrand G. Gold(III)- versus gold(I)-induced cyclization: synthesis of six-membered mesoionic carbene and acyclic (aryl)(heteroaryl) carbene complexes. Angew Chem Int Ed Engl 2013; 52:758-61. [PMID: 23169762 PMCID: PMC3712865 DOI: 10.1002/anie.201207961] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Revised: 10/25/2012] [Indexed: 12/17/2022]
Abstract
The golden state: selective 5-exo- and 6-endo-cyclizations of an alkynyl benzothioamide have been achieved. The selectivity is controlled by the oxidation state of the gold precursor (+I or +III), yielding two new types of carbene ligand: an (aryl)(heteroaryl)carbene and a six-membered mesoionic carbene. Mes=2,4,6-trimethylphenyl.
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Affiliation(s)
- Gaël Ung
- UCSD-CNRS Joint Research Chemistry Laboratory (UMI 3555), Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093-0343 (USA)
| | - Michele Soleilhavoup
- UCSD-CNRS Joint Research Chemistry Laboratory (UMI 3555), Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093-0343 (USA)
| | - Guy Bertrand
- UCSD-CNRS Joint Research Chemistry Laboratory (UMI 3555), Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093-0343 (USA)
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Ung G, Soleilhavoup M, Bertrand G. Gold-vermittelte Cyclisierung: ob sechsgliedriges mesoionisches Carben oder acyclischer (Aryl)(heteroaryl)-Carbenkomplex - entscheidend ist die Oxidationsstufe. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201207961] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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