1
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Dobrydnev AV, Popova MV, Volovenko YM. Cyclic Sulfinamides. CHEM REC 2024; 24:e202300221. [PMID: 37594737 DOI: 10.1002/tcr.202300221] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 08/09/2023] [Indexed: 08/19/2023]
Abstract
The literature on cyclic sulfinamides (put simply, sultims) published from 1989 to 2022 has been summarized and reviewed. The information is divided into two sections: the analysis of synthetic methods on the preparation of cyclic sulfinamides and the discussion of the chemical properties of cyclic sulfinamides focusing on their reactions and applications. The survey of the reaction conditions, provided in the most detailed way, and a critical view of the reaction mechanisms add an extra dimension to the text. The data presented will be useful to specialists in different areas, especially those who work in the field of synthetic organic and pharmaceutical chemistry.
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Affiliation(s)
- Alexey V Dobrydnev
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyiv, 01033, Ukraine
- Enamine Ltd., Chervonotkatska Street 78, Kyiv, 02094, Ukraine
| | - Maria V Popova
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyiv, 01033, Ukraine
- Max Planck Institute for Polymer Research, Ackermannweg 10, D-55128, Mainz, Germany
| | - Yulian M Volovenko
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyiv, 01033, Ukraine
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2
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Izhyk VV, Poliudov AO, Dobrydnev AV, Omelian TV, Popova MV, Volovenko YM. Synthesis of alkyl isothiazolidine-1,1-dioxide 3-carboxylates via the intramolecular carbo-Michael reaction strategy. Tetrahedron 2022. [DOI: 10.1016/j.tet.2022.133013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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3
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Design, Synthesis, and Biochemical Evaluation of New Triazole Derivatives as Aurora-A Kinase Inhibitors. Molecules 2021; 26:molecules26185678. [PMID: 34577149 PMCID: PMC8469531 DOI: 10.3390/molecules26185678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 09/11/2021] [Accepted: 09/14/2021] [Indexed: 11/17/2022] Open
Abstract
Aurora-A kinase, a key mitosis regulator, is expressed in a cell cycle-dependent manner and has an essential role in maintaining chromosomal stability and the normal progression of the cell through mitosis. Aurora-A kinase is overexpressed in many malignant solid tumors, such as breast, ovarian, colon, and pancreatic cancers. Thus, inhibiting Aurora-A kinase activity is a promising approach for cancer treatment. Here, new triazole derivatives were designed as bioisosteric analogues of the known inhibitor JNJ-7706621. The new compounds showed interesting inhibitory activity against Aurora-A kinase, as attested by IC50s in the low to submicromolar range.
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4
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Fu J, Li XB, Wang LX, Lv XH, Lu Z, Wang F, Xia Q, Yu L, Li CM. One-Step Dip-Coating-Fabricated Core-Shell Silk Fibroin Rice Paper Fibrous Scaffolds for 3D Tumor Spheroid Formation. ACS APPLIED BIO MATERIALS 2020; 3:7462-7471. [PMID: 35019488 DOI: 10.1021/acsabm.0c00679] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Bioscaffolds are important substrates for supporting three-dimensional (3D) cell cultures. Silk fibroin (SF) is an attractive biomaterial in tissue engineering because of its good biocompatibility and mechanical properties. Electrospinning is one of the most often used approaches to fabricate SF fibrous scaffolds; yet, this technique still faces many challenges, such as low yield, residual organic solvents, limited extensibility of fibers, and a lack of spatial control over pore size. To circumvent these limitations, a core-shell SF on rice paper (SF@RP) fibrous scaffold was fabricated using a mild one-step dip-coating method. The cellulose fiber matrix of RP is the physical basis of the 3D scaffold, whereas the SF coating on the cellulose fiber controls the adhesion/spreading of the cells. The results indicated that by tuning the secondary structure of SF on the surface of a SF@RP scaffold, the cell behavior on SF@RP could be tuned. Tumor spheroids can be formed on SF@RP scaffolds with a dominant random secondary structure, in contrast to cells adhering and spreading on SF@RP scaffolds with a higher ratio of β-sheet secondary structures. Direct culturing of breast cancer MDA-MB-231 and MCF-7, lung cancer A549, prostate cancer DU145, and liver cancer HepG2 cells could spontaneously lead to corresponding tumor spheroids on SF@RP. In addition, the physiological characteristics of HepG2 tumor spheroids were investigated, and the results showed that compared with HepG2 monolayer cells, CYP3A4, CYP1A1, and albumin gene expression levels in HepG2 cell spheres formed on SF@RP scaffolds were significantly higher. Moreover, these spheroids showed higher drug resistance. In summary, these SF@RP scaffolds prepared by the dip-coating method are biocompatible substrates for cell culture, especially for tumor cell spheroid formation.
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Affiliation(s)
- Jingjing Fu
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Xiao Bai Li
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Lin Xiang Wang
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Xiao Hui Lv
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Zhisong Lu
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Feng Wang
- State Key Laboratory of Silkworm Genome Biology, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China.,Chongqing Engineering and Technology Research Center for Novel Silk Materials, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Qingyou Xia
- State Key Laboratory of Silkworm Genome Biology, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China.,Chongqing Engineering and Technology Research Center for Novel Silk Materials, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Ling Yu
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China
| | - Chang Ming Li
- Institute for Clean Energy & Advanced Materials, School of Materials & Energy, Southwest University, 1 Tiansheng Road, Chongqing 400715, P. R. China.,Institute of Advanced Cross-field Science, Qingdao University, Qingdao 266071, P. R. China
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5
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Nazeer MA, Yilgor E, Yilgor I. Electrospun polycaprolactone/silk fibroin nanofibrous bioactive scaffolds for tissue engineering applications. POLYMER 2019. [DOI: 10.1016/j.polymer.2019.02.023] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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6
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Klein R, Linciano P, Celenza G, Bellio P, Papaioannou S, Blazquez J, Cendron L, Brenk R, Tondi D. In silico identification and experimental validation of hits active against KPC-2 β-lactamase. PLoS One 2018; 13:e0203241. [PMID: 30496182 PMCID: PMC6264499 DOI: 10.1371/journal.pone.0203241] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 11/06/2018] [Indexed: 01/25/2023] Open
Abstract
Bacterial resistance has become a worldwide concern, particularly after the emergence of resistant strains overproducing carbapenemases. Among these, the KPC-2 carbapenemase represents a significant clinical challenge, being characterized by a broad substrate spectrum that includes aminothiazoleoxime and cephalosporins such as cefotaxime. Moreover, strains harboring KPC-type β-lactamases are often reported as resistant to available β-lactamase inhibitors (clavulanic acid, tazobactam and sulbactam). Therefore, the identification of novel non β-lactam KPC-2 inhibitors is strongly necessary to maintain treatment options. This study explored novel, non-covalent inhibitors active against KPC-2, as putative hit candidates. We performed a structure-based in silico screening of commercially available compounds for non-β-lactam KPC-2 inhibitors. Thirty-two commercially available high-scoring, fragment-like hits were selected for in vitro validation and their activity and mechanism of action vs the target was experimentally evaluated using recombinant KPC-2. N-(3-(1H-tetrazol-5-yl)phenyl)-3-fluorobenzamide (11a), in light of its ligand efficiency (LE = 0.28 kcal/mol/non-hydrogen atom) and chemistry, was selected as hit to be directed to chemical optimization to improve potency vs the enzyme and explore structural requirement for inhibition in KPC-2 binding site. Further, the compounds were evaluated against clinical strains overexpressing KPC-2 and the most promising compound reduced the MIC of the β-lactam antibiotic meropenem by four-fold.
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Affiliation(s)
- Raphael Klein
- Institute of Pharmacy and Biochemistry, Johannes Gutenberg University, Mainz, Germany
| | - Pasquale Linciano
- Dipartimento di Scienze della Vita, Università di Modena e Reggio Emilia, Modena, Italy
| | - Giuseppe Celenza
- Dipartimento di Scienze Cliniche Applicate e Biotecnologie, Università dell’Aquila,L’Aquila, Italy
| | - Pierangelo Bellio
- Dipartimento di Scienze Cliniche Applicate e Biotecnologie, Università dell’Aquila,L’Aquila, Italy
| | - Sofia Papaioannou
- Dipartimento di Scienze della Vita, Università di Modena e Reggio Emilia, Modena, Italy
| | - Jesus Blazquez
- Department of Microbial Biotechnology, National Center for Biotechnology, Consejo Superior de Investigaciones Científicas (CSIC), Campus de la Universidad Autonoma-Cantoblanco, Madrid, Spain
| | - Laura Cendron
- Dipartimento di Biologia, Università di Padova, Padova, Italy
| | - Ruth Brenk
- Department of Biomedicine, University of Bergen, Bergen, Norway
- * E-mail: (DT); (RB)
| | - Donatella Tondi
- Dipartimento di Scienze della Vita, Università di Modena e Reggio Emilia, Modena, Italy
- * E-mail: (DT); (RB)
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7
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Vicente-Blázquez A, González M, Álvarez R, Del Mazo S, Medarde M, Peláez R. Antitubulin sulfonamides: The successful combination of an established drug class and a multifaceted target. Med Res Rev 2018; 39:775-830. [PMID: 30362234 DOI: 10.1002/med.21541] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Revised: 09/02/2018] [Accepted: 09/06/2018] [Indexed: 12/13/2022]
Abstract
Tubulin, the microtubules and their dynamic behavior are amongst the most successful antitumor, antifungal, antiparasitic, and herbicidal drug targets. Sulfonamides are exemplary drugs with applications in the clinic, in veterinary and in the agrochemical industry. This review summarizes the actual state and recent progress of both fields looking from the double point of view of the target and its drugs, with special focus onto the structural aspects. The article starts with a brief description of tubulin structure and its dynamic assembly and disassembly into microtubules and other polymers. Posttranslational modifications and the many cellular means of regulating and modulating tubulin's biology are briefly presented in the tubulin code. Next, the structurally characterized drug binding sites, their occupying drugs and the effects they induce are described, emphasizing on the structural requirements for high potency, selectivity, and low toxicity. The second part starts with a summary of the favorable and highly tunable combination of physical-chemical and biological properties that render sulfonamides a prototypical example of privileged scaffolds with representatives in many therapeutic areas. A complete description of tubulin-binding sulfonamides is provided, covering the different species and drug sites. Some of the antimitotic sulfonamides have met with very successful applications and others less so, thus illustrating the advances, limitations, and future perspectives of the field. All of them combine in a mechanism of action and a clinical outcome that conform efficient drugs.
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Affiliation(s)
- Alba Vicente-Blázquez
- Laboratorio de Química Orgánica y Farmacéutica, Departamento de Ciencias Farmacéuticas, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Instituto de Investigación Biomédica de Salamanca (IBSAL), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Centro de Investigación de Enfermedades Tropicales de la Universidad de Salamanca (CIETUS), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Laboratory of Cell Death and Cancer Therapy, Department of Molecular Biomedicine, Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain
| | - Myriam González
- Laboratorio de Química Orgánica y Farmacéutica, Departamento de Ciencias Farmacéuticas, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Instituto de Investigación Biomédica de Salamanca (IBSAL), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Centro de Investigación de Enfermedades Tropicales de la Universidad de Salamanca (CIETUS), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain
| | - Raquel Álvarez
- Laboratorio de Química Orgánica y Farmacéutica, Departamento de Ciencias Farmacéuticas, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Instituto de Investigación Biomédica de Salamanca (IBSAL), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Centro de Investigación de Enfermedades Tropicales de la Universidad de Salamanca (CIETUS), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain
| | - Sara Del Mazo
- Laboratorio de Química Orgánica y Farmacéutica, Departamento de Ciencias Farmacéuticas, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Instituto de Investigación Biomédica de Salamanca (IBSAL), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Centro de Investigación de Enfermedades Tropicales de la Universidad de Salamanca (CIETUS), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain
| | - Manuel Medarde
- Laboratorio de Química Orgánica y Farmacéutica, Departamento de Ciencias Farmacéuticas, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Instituto de Investigación Biomédica de Salamanca (IBSAL), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Centro de Investigación de Enfermedades Tropicales de la Universidad de Salamanca (CIETUS), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain
| | - Rafael Peláez
- Laboratorio de Química Orgánica y Farmacéutica, Departamento de Ciencias Farmacéuticas, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Instituto de Investigación Biomédica de Salamanca (IBSAL), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.,Facultad de Farmacia, Centro de Investigación de Enfermedades Tropicales de la Universidad de Salamanca (CIETUS), Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain
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8
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Baravkar SB, Wagh MA, Paul D, Santra M, Sanjayan GJ. Synthesis and anticancer activity of conformationally constrained Smac mimetics containing pseudo β turns. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.08.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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9
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Thakkar BS, Engh RA. Comparative conformational analyses and molecular dynamics studies of glycylglycine methyl ester and glycylglycine N-methylamide. RSC Adv 2018. [DOI: 10.1039/c7ra13712e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Amide–ester substitution and water models significantly alter conformational and solvation properties of glycine–glycine dipeptides.
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Affiliation(s)
| | - Richard A. Engh
- Department of Chemistry
- UiT the Arctic University of Norway
- 9037-Tromsø
- Norway
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10
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Kotmale AS, Sangtani E, Gonnade RG, Sarkar D, Burade S, Rajamohanan PR, Sanjayan GJ. Conformational studies of Ant–Pro motif-incorporated cyclic peptides: gramicidin S and avellanin. NEW J CHEM 2018. [DOI: 10.1039/c7nj03701e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Conformational studies suggest that an AntDPro motif-incorporated synthetic gramicidin S analog retains β-sheet conformation, while its truncated analog avellanin disturbs the β-sheet conformation.
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Affiliation(s)
- Amol S. Kotmale
- Division of Organic Chemistry
- CSIR-National Chemical Laboratory (CSIR-NCL)
- Pune 411 008
- India
- Central NMR Facility
| | - Ekta Sangtani
- Center for Materials Characterization
- CSIR-National Chemical Laboratory (CSIR-NCL)
- Pune 411 008
- India
| | - Rajesh G. Gonnade
- Center for Materials Characterization
- CSIR-National Chemical Laboratory (CSIR-NCL)
- Pune 411 008
- India
| | - Dhiman Sarkar
- Combichem-Bioresource Center
- Organic Chemistry Division
- CSIR-National Chemical Laboratory
- Pune 411008
- India
| | - Sachin Burade
- Department of Chemistry
- Savitribai Phule Pune University
- Pune
- India
| | | | - Gangadhar J. Sanjayan
- Division of Organic Chemistry
- CSIR-National Chemical Laboratory (CSIR-NCL)
- Pune 411 008
- India
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11
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Cameron AJ, Squire CJ, Edwards PJB, Harjes E, Sarojini V. Crystal and NMR Structures of a Peptidomimetic β-Turn That Provides Facile Synthesis of 13-Membered Cyclic Tetrapeptides. Chem Asian J 2017; 12:3195-3202. [PMID: 29098772 DOI: 10.1002/asia.201701422] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Revised: 10/30/2017] [Indexed: 12/31/2022]
Abstract
Herein we report the unique conformations adopted by linear and cyclic tetrapeptides (CTPs) containing 2-aminobenzoic acid (2-Abz) in solution and as single crystals. The crystal structure of the linear tetrapeptide H2 N-d-Leu-d-Phe-2-Abz-d-Ala-COOH (1) reveals a novel planar peptidomimetic β-turn stabilized by three hydrogen bonds and is in agreement with its NMR structure in solution. While CTPs are often synthetically inaccessible or cyclize in poor yield, both 1 and its N-Me-d-Phe analogue (2) adopt pseudo-cyclic frameworks enabling near quantitative conversion to the corresponding CTPs 3 and 4. The crystal structure of the N-methylated peptide (4) is the first reported for a CTP containing 2-Abz and reveals a distinctly planar 13-membered ring, which is also evident in solution. The N-methylation of d-Phe results in a peptide bond inversion compared to the conformation of 3 in solution.
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Affiliation(s)
- Alan J Cameron
- School of Chemical Sciences, The University of Auckland, Auckland, 1142, New Zealand
| | - Christopher J Squire
- School of Biological Sciences, The University of Auckland, Auckland, 1142, New Zealand
| | - Patrick J B Edwards
- Institute of Fundamental Sciences, Massey University, Palmerston North, 4442, New Zealand
| | - Elena Harjes
- Institute of Fundamental Sciences, Massey University, Palmerston North, 4442, New Zealand
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12
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Zaitsev KV, Cherepakhin VS, Churakov AV, Peregudov AS, Tarasevich BN, Egorov MP, Zaitseva GS, Karlov SS. Extending the family of stable heavier carbenes: New tetrylenes based on N,N,O-ligands. Inorganica Chim Acta 2016. [DOI: 10.1016/j.ica.2015.12.025] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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13
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Ingole TS, Vijayadas KN, Chaitanya KN, Kotmale AS, Gawade RL, Gonnade RG, Rajamohanan PR, Sanjayan GJ. Disruption of Native β-Turns: Consequence of Folding Competition between Native and Orthanilic Acid Proline-BasedPseudoβ-Turn. European J Org Chem 2016. [DOI: 10.1002/ejoc.201501558] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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14
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Jedhe GS, Vijayadas KN, Kotmale AS, Sangtani E, Shinde DR, Gonnade RG, Rajamohanan PR, Sanjayan GJ. Residue dependent hydrogen-bonding preferences in orthanilic acid-based short peptide β-turn motifs. RSC Adv 2016. [DOI: 10.1039/c6ra05684a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
This communication describes the competition between native β-turn (C10) and 2-aminobenzenesulfonic acid (SAnt)(orthanilic acid)-based pseudo β-turn (C11) in their hybrid peptides.
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Affiliation(s)
- Ganesh S. Jedhe
- Division of Organic Chemistry
- CSIR-National Chemical Laboratory
- Pune 411 008
- India
| | | | - Amol S. Kotmale
- Central NMR Facility
- CSIR-National Chemical Laboratory
- Pune 411 008
- India
| | - Ekta Sangtani
- Center for Materials Characterization
- CSIR-National Chemical Laboratory
- Pune 411 008
- India
| | - Dinesh R. Shinde
- Central NMR Facility
- CSIR-National Chemical Laboratory
- Pune 411 008
- India
| | - Rajesh G. Gonnade
- Center for Materials Characterization
- CSIR-National Chemical Laboratory
- Pune 411 008
- India
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15
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Vijayadas KN, Kotmale AS, Thorat SH, Gonnade RG, Nair RV, Rajamohanan PR, Sanjayan GJ. Reversal of H-bonding direction by N-sulfonation in a synthetic reverse-turn peptide motif. Org Biomol Chem 2015; 13:3064-9. [PMID: 25624112 DOI: 10.1039/c4ob02438a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This communication depicts an intriguing example of hydrogen-bonding reversal upon introduction of a sulfonamide linkage at the N-terminus of a synthetic reverse-turn peptide motif. The ready availability of two sulfonyl oxygen atoms, as hydrogen-bonding acceptors, combined with the inherent twisted conformation of sulfonamides are seen to act as switches that engage/disengage the hydrogen-bond at the sticky ends/termini.
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Affiliation(s)
- Kuruppanthara N Vijayadas
- Division of Organic Chemistry, National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411 008, India.
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16
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Kumar R, Rai SK, Singh P, Gaurav A, Yadav P, Khanna RS, Gupta H, Tewari AK. Face-to-face stacking in sulfonamide based bis-ethylene bridged heteroaromatic dimers. RSC Adv 2015. [DOI: 10.1039/c5ra12230a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Four sulfonamide based bis-ethylene bridged heteroaromatic dimers were crystallized in offset face-to-face stacked geometry. Further, density functional theory revealed that crystallized structures were the most stable conformers.
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Affiliation(s)
- Ranjeet Kumar
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Sunil K. Rai
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Praveen Singh
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Archana Gaurav
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Pratima Yadav
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Ranjana S. Khanna
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
| | - Hariom Gupta
- Analytical Discipline and Centralized Instrument Facility
- CSMCRI
- Bhavnagar 364021
- India
| | - Ashish K. Tewari
- Department of Chemistry (Center of Advanced Study)
- Faculty of Science
- Banaras Hindu University
- Varanasi-221005
- India
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17
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Priya G, Kotmale AS, Chakravarty D, Puranik VG, Rajamohanan PR, Sanjayan GJ. Conformational modulation of peptides using β-amino benzenesulfonic acid (SAnt). Org Biomol Chem 2015; 13:2087-91. [DOI: 10.1039/c4ob02421d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
This communication describes the utility of the conformationally restricted aromatic β-amino acid (2-aminobenzenesulfonic acid, SAnt) for inducing various folding interactions in short peptides.
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Affiliation(s)
- Gowri Priya
- Division of Organic Chemistry
- National Chemical Laboratory
- Pune 411 008
- India
| | - Amol S. Kotmale
- Centre for Materials Characterisation
- National Chemical Laboratory
- Pune 411 008
- India
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Kang J, Zhu B, Liu J, Wang B, Zhang L, Su CY. Chiral dirhodium catalysts derived from l-serine, l-threonine and l-cysteine: design, synthesis and application. Org Chem Front 2015. [DOI: 10.1039/c5qo00110b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
A series of dirhodium complexes were synthesized and found to be effective chiral catalysts for nitrene and carbene transfer reactions.
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Affiliation(s)
- Jian Kang
- MOE Laboratory of Bioinorganic and Synthetic Chemistry
- Lehn Institute of Functional Materials
- School of Chemistry and Chemical Engineering
- Sun yat-sen University
- Guangzhou
| | - Baofu Zhu
- MOE Laboratory of Bioinorganic and Synthetic Chemistry
- Lehn Institute of Functional Materials
- School of Chemistry and Chemical Engineering
- Sun yat-sen University
- Guangzhou
| | - Jiewei Liu
- MOE Laboratory of Bioinorganic and Synthetic Chemistry
- Lehn Institute of Functional Materials
- School of Chemistry and Chemical Engineering
- Sun yat-sen University
- Guangzhou
| | - Bo Wang
- MOE Laboratory of Bioinorganic and Synthetic Chemistry
- Lehn Institute of Functional Materials
- School of Chemistry and Chemical Engineering
- Sun yat-sen University
- Guangzhou
| | - Li Zhang
- MOE Laboratory of Bioinorganic and Synthetic Chemistry
- Lehn Institute of Functional Materials
- School of Chemistry and Chemical Engineering
- Sun yat-sen University
- Guangzhou
| | - Cheng-Yong Su
- MOE Laboratory of Bioinorganic and Synthetic Chemistry
- Lehn Institute of Functional Materials
- School of Chemistry and Chemical Engineering
- Sun yat-sen University
- Guangzhou
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19
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Kheria S, Nair RV, Kotmale AS, Rajamohanan PR, Sanjayan GJ. The role of N-terminal proline in stabilizing the Ant–Pro zipper motif. NEW J CHEM 2015. [DOI: 10.1039/c4nj02151g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This paper deals with the role of N-terminal proline in stabilizing the Ant–Pro zipper structure by the co-operative contribution of competing forces viz. hydrogen bonding, aromatic stacking and backbone chirality.
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Affiliation(s)
- Sanjeev Kheria
- Division of Organic Chemistry
- National Chemical Laboratory
- Pune 411 008
- India
| | - Roshna V. Nair
- Division of Organic Chemistry
- National Chemical Laboratory
- Pune 411 008
- India
| | - Amol S. Kotmale
- Central NMR Facility
- National Chemical Laboratory
- Pune 411 008
- India
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20
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Nair RV, Vijayadas KN, Roy A, Sanjayan GJ. Heterogeneous Foldamers from Aliphatic-Aromatic Amino Acid Building Blocks: Current Trends and Future Prospects. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402877] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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21
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Nair RV, Baravkar SB, Ingole TS, Sanjayan GJ. Synthetic turn mimetics and hairpin nucleators: Quo Vadimus? Chem Commun (Camb) 2014; 50:13874-84. [PMID: 25051222 DOI: 10.1039/c4cc03114h] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Structural mimicry of peptides has witnessed perceptible progress in the last three decades. Reverse turn and β-hairpin units are the smallest secondary structural motifs that are some of the most scrutinized functional cores of peptides and proteins. The practice of mimicking, without altering the function of the bioactive core, ranges from conformational locking of the basic skeleton to total replacement of structural architecture using synthetic analogues. Development of heterogeneous backbones--using unnatural residues in place of natural ones--has broadened further opportunities for efficient structural rigidification. This feature article endeavours to trail the path of progress achieved hitherto and envisage the possibilities that lie ahead in the development of synthetic turn mimetics and hairpin nucleators.
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Affiliation(s)
- Roshna V Nair
- Division of Organic Chemistry, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411 008, India.
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22
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Kale SS, Kunjir SM, Gawade RL, Puranik VG, Rajamohanan PR, Sanjayan GJ. Conformational modulation of peptide secondary structures using β-aminobenzenesulfonic acid. Chem Commun (Camb) 2014; 50:2886-8. [PMID: 24487479 DOI: 10.1039/c3cc48850k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This communication describes the influence of β-aminobenzenesulfonic acid ((S)Ant) on the conformational preferences of hetero foldamers. The designed (Aib-(S)Ant-Aib)n and (Aib-(S)Ant-Pro)n oligomers display a well-defined folded conformation featuring intramolecular mixed hydrogen bonding (7/11) and intra-residual (6/5) H-bonding interactions, respectively.
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Affiliation(s)
- Sangram S Kale
- Division of Organic Chemistry, National Chemical Laboratory, Homi Bhabha Road, Pune 411 008, India.
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23
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Nair RV, Sanjayan GJ. (Thio)urea-mediated benzoxazinone opening: mild approach towards synthesis of o-(substituted amido)benzamides. RSC Adv 2014. [DOI: 10.1039/c3ra45903a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
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24
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Roy A, Kotmale AS, Gawade RL, Puranik VG, Rajamohanan PR, Sanjayan GJ. Probing the folding induction ability of orthanilic acid in peptides: some observations. RSC Adv 2014. [DOI: 10.1039/c3ra47039c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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25
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Nair RV, Kotmale AS, Dhokale SA, Gawade RL, Puranik VG, Rajamohanan PR, Sanjayan GJ. Formation of a pseudo-β-hairpin motif utilizing the Ant–Pro reverse turn: consequences of stereochemical reordering. Org Biomol Chem 2014; 12:774-82. [DOI: 10.1039/c3ob42016g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein, we report a special case of pseudo-β-hairpin formation by tetrapeptide sequences featuring a two-residue Ant–Pro dipeptide motif (Ant = anthranilic acid and Pro = proline) at the loop region.
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Affiliation(s)
- Roshna V. Nair
- Division of Organic Synthesis
- National Chemical Laboratory
- Pune 411 008, India
| | - Amol S. Kotmale
- Central Material Characterization Division
- National Chemical Laboratory
- Pune 411 008, India
| | - Snehal A. Dhokale
- Central Material Characterization Division
- National Chemical Laboratory
- Pune 411 008, India
| | - Rupesh L. Gawade
- Central NMR Facility
- National Chemical Laboratory
- Pune 411 008, India
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26
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Nair RV, Kheria S, Rayavarapu S, Kotmale AS, Jagadeesh B, Gonnade RG, Puranik VG, Rajamohanan PR, Sanjayan GJ. A Synthetic Zipper Peptide Motif Orchestrated via Co-operative Interplay of Hydrogen Bonding, Aromatic Stacking, and Backbone Chirality. J Am Chem Soc 2013; 135:11477-80. [DOI: 10.1021/ja405455g] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
| | | | | | | | - Bharatam Jagadeesh
- Center for NMR and Structural Chemistry, Indian Institute of Chemical Technology, Hyderabad 500 007, India
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27
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Ramesh VVE, Vijayadas KN, Dhokale S, Gonnade RG, Rajamohanan PR, Sanjayan GJ. Switching the H-bonding network of a foldamer by modulating the backbone chirality and constitutional ratio of amino acids. Org Biomol Chem 2013; 11:7072-5. [DOI: 10.1039/c3ob41369a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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28
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Kale SS, Priya G, Kotmale AS, Gawade RL, Puranik VG, Rajamohanan PR, Sanjayan GJ. Orthanilic acid-promoted reverse turn formation in peptides. Chem Commun (Camb) 2013; 49:2222-4. [DOI: 10.1039/c3cc40522b] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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29
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Vijayadas KN, Nair RV, Gawade RL, Kotmale AS, Prabhakaran P, Gonnade RG, Puranik VG, Rajamohanan PR, Sanjayan GJ. Ester vs. amide on folding: a case study with a 2-residue synthetic peptide. Org Biomol Chem 2013; 11:8348-56. [DOI: 10.1039/c3ob41967c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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