1
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Fast and sensitive recognition of enantiomers by electrochemical chiral analysis: Recent advances and future perspectives. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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2
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Zhao B, Miao P, Hu Z, Zhang X, Geng X, Chen Y, Feng L. Signal-on electrochemical aptasensors with different target-induced conformations for prostate specific antigen detection. Anal Chim Acta 2021; 1152:338282. [PMID: 33648646 DOI: 10.1016/j.aca.2021.338282] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Revised: 01/03/2021] [Accepted: 01/31/2021] [Indexed: 02/06/2023]
Abstract
Prostate specific antigen (PSA) has become a potential biomarker for detecting prostate cancer (PCa) in the early stage. Herein, we report a target-induced resolution for the detection of PSA sensitively and specifically by amperometric electrochemical measurements. To meet a satisfactory performance, three conformations of pre-design DNA aptamers including two stem-loop structures and a double strand structure have been investigated and compared. All of them are immobilized on gold electrode as capture probes with redox-active molecular. The mechanism of signal transduction depends on molecular recognition events involving aptamer conformational changes, thus influencing the charge transfer. A short, single-stranded DNA (ssDNA) pseudoknot forming two stem-loop structural aptamers with labeled MB at the 3' -terminus was found to posse the highest signal variation than other structure when induced by PSA due to the strong conformational change. With the optimized capture strand, the aptasensor showed the peak current increase of MB by the binding relationship between PSA and the sensor over a wide concentration range of 4 magnitude orders. The proposed aptasensor exhibited a wide detection range from 10 pg/mL to 500 ng/mL with a low detection limit of 1.24 pg/mL (S/N = 3). Moreover, the electrochemical aptasensor demonstrated good reproducibility, sensitivity, selectivity, and reliability for the detection of PSA. We also found the aptasensor had a good response in the human serum samples, making this device easy to operate for the detection of the PSA physiological concentration.
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Affiliation(s)
- Biying Zhao
- Materials Genome Institute, Shanghai University, China
| | - Ping Miao
- Renji Hospital, Shanghai Jiaotong University School of Medicine, 160th Pujian Road, Shanghai, China
| | - Ziheng Hu
- Materials Genome Institute, Shanghai University, China
| | - Xinying Zhang
- Materials Genome Institute, Shanghai University, China
| | - Xue Geng
- Nanjing Normal University, Coll Chem & Mat Sci, Nanjing, 210046, Jiangsu, China
| | - Yingying Chen
- Materials Genome Institute, Shanghai University, China
| | - Lingyan Feng
- Materials Genome Institute, Shanghai University, China.
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3
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Oukacine F, Ravelet C, Peyrin E. Enantiomeric sensing and separation by nucleic acids. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2019.115733] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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4
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Hu Z, Suo Z, Liu W, Zhao B, Xing F, Zhang Y, Feng L. DNA conformational polymorphism for biosensing applications. Biosens Bioelectron 2019; 131:237-249. [PMID: 30849723 DOI: 10.1016/j.bios.2019.02.019] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 01/29/2019] [Accepted: 02/04/2019] [Indexed: 12/12/2022]
Abstract
In this mini review, we will briefly introduce the rapid development of DNA conformational polymorphism in biosensing field, including canonical DNA duplex, triplex, quadruplex, DNA origami, as well as more functionalized DNAs (aptamer, DNAzyme etc.). Various DNA structures are adopted to play important roles in sensor construction, through working as recognition receptor, signal reporter or linking staple for signal motifs, etc. We will mainly summarize their recent developments in DNA-based electrochemical and fluorescent sensors. For the electrochemical sensors, several types will be included, e.g. the amperometric, electrochemical impedance, electrochemiluminescence, as well as field-effect transistor sensors. For the fluorescent sensors, DNA is usually modified with fluorescent molecules or novel nanomaterials as report probes, excepting its core recognition function. Finally, general conclusion and future perspectives will be discussed for further developments.
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Affiliation(s)
- Ziheng Hu
- Materials Genome Institute, Shanghai University, 200444 Shanghai, China
| | - Zhiguang Suo
- Materials Genome Institute, Shanghai University, 200444 Shanghai, China
| | - Wenxia Liu
- Department of Chemistry, College of Science, Shanghai University, 200444 Shanghai, China
| | - Biying Zhao
- Materials Genome Institute, Shanghai University, 200444 Shanghai, China
| | - Feifei Xing
- Department of Chemistry, College of Science, Shanghai University, 200444 Shanghai, China
| | - Yuan Zhang
- Materials Genome Institute, Shanghai University, 200444 Shanghai, China.
| | - Lingyan Feng
- Materials Genome Institute, Shanghai University, 200444 Shanghai, China.
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5
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Maistrenko VN, Sidel’nikov AV, Zil’berg RA. Enantioselective Voltammetric Sensors: New Solutions. JOURNAL OF ANALYTICAL CHEMISTRY 2018. [DOI: 10.1134/s1061934818010057] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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6
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Nigmatullin RR, Budnikov HC, Khamzin AA, Sidelnikov AV, Maksyutova EI. Temporal multi-sensor system for voltammetric recognition of l- and d-tryptophan enantiomers based on generalized principal component analysis. NEW J CHEM 2018. [DOI: 10.1039/c7nj03695g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The results of a quantitative reading of the cyclic voltammetry behavior of the tryptophan (Trp) enantiomers deposited on an electrochemically activated glassy carbon electrode (GCE) are presented.
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Affiliation(s)
- R. R. Nigmatullin
- Radioelectronic and Informative-Measurements Techniques Department
- Kazan National Research Technical University (KNRTU-KAI)
- Kazan
- Russian Federation
| | - H. C. Budnikov
- Institute of Chemistry
- Kazan Federal University (KFU)
- Kazan
- Russian Federation
| | - A. A. Khamzin
- Institute of Physics
- Kazan Federal University (KFU)
- Kazan
- Russian Federation
| | - A. V. Sidelnikov
- Chemistry Department
- Bashkir State University (BSU)
- Ufa
- Russian Federation
| | - E. I. Maksyutova
- Chemistry Department
- Bashkir State University (BSU)
- Ufa
- Russian Federation
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7
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Evtugyn GA, Porfireva AV, Stoikov II. Electrochemical DNA sensors based on spatially distributed redox mediators: challenges and promises. PURE APPL CHEM 2017. [DOI: 10.1515/pac-2016-1124] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
AbstractDNA and aptasensors are widely used for fast and reliable detection of disease biomarkers, pharmaceuticals, toxins, metabolites and other species necessary for biomedical diagnostics. In the overview, the concept of spatially distributed redox mediators is considered with particular emphasis to the signal generation and biospecific layer assembling. The application of non-conductive polymers bearing redox labels, supramolecular carriers with attached DNA aptamers and redox active dyes and E-sensor concept are considered as examples of the approach announced.
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Affiliation(s)
- Gennady A. Evtugyn
- A.M.Butlerov’ Chemistry Institute of Kazan Federal University, 420008 Kazan, Russian Federation
| | - Anna V. Porfireva
- A.M.Butlerov’ Chemistry Institute of Kazan Federal University, 420008 Kazan, Russian Federation
| | - Ivan I. Stoikov
- A.M.Butlerov’ Chemistry Institute of Kazan Federal University, 420008 Kazan, Russian Federation
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8
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Hu Y, Lin F, Wu T, Zhou Y, Li Q, Shao Y, Xu Z. DNA Duplex Engineering for Enantioselective Fluorescent Sensor. Anal Chem 2017; 89:2181-2185. [DOI: 10.1021/acs.analchem.6b04709] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Yuehua Hu
- Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, China
| | - Fan Lin
- Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, China
| | - Tao Wu
- Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, China
| | - Yufeng Zhou
- Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, China
| | - Qiusha Li
- Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, China
| | - Yong Shao
- Institute of Physical Chemistry, Zhejiang Normal University, Jinhua 321004, Zhejiang, China
| | - Zhiai Xu
- School
of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200241, China
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9
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Electrochemical DNA probe for Hg2+ detection based on a triple-helix DNA and Multistage Signal Amplification Strategy. Biosens Bioelectron 2016; 86:907-912. [DOI: 10.1016/j.bios.2016.07.098] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Revised: 07/14/2016] [Accepted: 07/27/2016] [Indexed: 11/23/2022]
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10
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Affiliation(s)
- Minghua Liu
- Beijing National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Li Zhang
- Beijing National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Tianyu Wang
- Beijing National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
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11
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Wei B, Liu N, Zhang J, Ou X, Duan R, Yang Z, Lou X, Xia F. Regulation of DNA Self-Assembly and DNA Hybridization by Chiral Molecules with Corresponding Biosensor Applications. Anal Chem 2015; 87:2058-62. [DOI: 10.1021/ac504797e] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Benmei Wei
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Nannan Liu
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Juntao Zhang
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
- National
Engineering Research Center for Nanomedicine, College of Life Science
and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Xiaowen Ou
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Ruixue Duan
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Zekun Yang
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Xiaoding Lou
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Fan Xia
- Key
Laboratory for Large-Format Battery Materials and System, Ministry
of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
- National
Engineering Research Center for Nanomedicine, College of Life Science
and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
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12
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Feng L, Sivanesan A, Lyu Z, Offenhäusser A, Mayer D. Electrochemical current rectification-a novel signal amplification strategy for highly sensitive and selective aptamer-based biosensor. Biosens Bioelectron 2014; 66:62-8. [PMID: 25460883 DOI: 10.1016/j.bios.2014.10.057] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Revised: 10/23/2014] [Accepted: 10/26/2014] [Indexed: 10/24/2022]
Abstract
Electrochemical aptamer-based (E-AB) sensors represent an emerging class of recently developed sensors. However, numerous of these sensors are limited by a low surface density of electrode-bound redox-oligonucleotides which are used as probe. Here we propose to use the concept of electrochemical current rectification (ECR) for the enhancement of the redox signal of E-AB sensors. Commonly, the probe-DNA performs a change in conformation during target binding and enables a nonrecurring charge transfer between redox-tag and electrode. In our system, the redox-tag of the probe-DNA is continuously replenished by solution-phase redox molecules. A unidirectional electron transfer from electrode via surface-linked redox-tag to the solution-phase redox molecules arises that efficiently amplifies the current response. Using this robust and straight-forward strategy, the developed sensor showed a substantial signal amplification and consequently improved sensitivity with a calculated detection limit of 114nM for ATP, which was improved by one order of magnitude compared with the amplification-free detection and superior to other previous detection results using enzymes or nanomaterials-based signal amplification. To the best of our knowledge, this is the first demonstration of an aptamer-based electrochemical biosensor involving electrochemical rectification, which can be presumably transferred to other biomedical sensor systems.
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Affiliation(s)
- Lingyan Feng
- Peter-Grünberg-Institute, PGI-8, Research Center Jülich, JARA-Fundamentals of Future Information Technology, Jülich 52425, Germany
| | - Arumugam Sivanesan
- Peter-Grünberg-Institute, PGI-8, Research Center Jülich, JARA-Fundamentals of Future Information Technology, Jülich 52425, Germany
| | - Zhaozi Lyu
- Peter-Grünberg-Institute, PGI-8, Research Center Jülich, JARA-Fundamentals of Future Information Technology, Jülich 52425, Germany
| | - Andreas Offenhäusser
- Peter-Grünberg-Institute, PGI-8, Research Center Jülich, JARA-Fundamentals of Future Information Technology, Jülich 52425, Germany
| | - Dirk Mayer
- Peter-Grünberg-Institute, PGI-8, Research Center Jülich, JARA-Fundamentals of Future Information Technology, Jülich 52425, Germany.
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13
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Wu L, Zhao C, Ren J, Qu X. Label-free Electrochemiluminescent Enantioselective Sensor for Distinguishing between Chiral Metallosupramolecular Complexes. Chemistry 2014; 20:11675-9. [DOI: 10.1002/chem.201403481] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2014] [Indexed: 02/04/2023]
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14
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Trojanowicz M. Enantioselective electrochemical sensors and biosensors: A mini-review. Electrochem commun 2014. [DOI: 10.1016/j.elecom.2013.10.034] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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15
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Fu Y, Duan X, Chen X, Zhang J, Li W. Enantioselective separation of chiral ofloxacin using functional Cu(ii)-coordinated G-rich oligonucleotides. RSC Adv 2014. [DOI: 10.1039/c3ra43251c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
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16
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Leung KH, He HZ, Wang W, Zhong HJ, Chan DSH, Leung CH, Ma DL. Label-free luminescent switch-on detection of endonuclease IV activity using a G-quadruplex-selective iridium(III) complex. ACS APPLIED MATERIALS & INTERFACES 2013; 5:12249-12253. [PMID: 24245499 DOI: 10.1021/am404314p] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
We report herein the synthesis and application of a novel G-quadruplex-selective luminescent iridium(III) complex [Ir(ppy)2(bcp)](+) (where ppy = 2-phenylpyridine and bcp = 2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline) for the sensitive detection of apurinic/apyrimidinic (AP) endonuclease activity. Using endonuclease IV (Endo IV) as a model enzyme, a duplex DNA substrate containing a G-quadruplex-forming sequence is cleaved by Endo IV at the abasic site. This releases the G-quadruplex sequence, which folds into a G-quadruplex and is recognised by the G-quadruplex-selective iridium(III) complex with an enhanced luminescence response. The assay achieved high sensitivity and selectivity for Endo IV over other tested enzymes.
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Affiliation(s)
- Ka-Ho Leung
- Department of Chemistry, Hong Kong Baptist University , Kowloon Tong, Hong Kong, China
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17
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Fu Y, Wang X, Zhang J, Li W. Nanomaterials and nanoclusters based on DNA modulation. Curr Opin Biotechnol 2013; 28:33-8. [PMID: 24832072 DOI: 10.1016/j.copbio.2013.10.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Revised: 10/25/2013] [Accepted: 10/31/2013] [Indexed: 12/27/2022]
Abstract
Besides the inherent chirality, DNA is enriched by nitrogen and oxygen functional groups that are preferential to coordinate with transition metal ions, and its self-assembled structures, including the G-quadruplex, the i-motif, and the conventional Watson-Crick duplex, etc., can be adjusted via different base pairings. Recently biotemplating on the basis of DNA self-assembly has been considered as an attractive method to construct switchable nanomaterials, to direct crystal growth and to design enantioselective selectors/catalysts. This review briefly covers the recent progress relevant to DNA modulated nano/subnano materials. The long-term goal of this area of research is to explore novel promisingly environmental-benign approaches to construct switchable nanomachines, nano/subnano clusters and enantioselective recognition platforms respectively, through DNA-based modulation.
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Affiliation(s)
- Yan Fu
- Key Laboratory of Systems Bioengineering MOE, Key Laboratory for Green Chemical Technology MOE, Tianjin University, Tianjin 300072, People's Republic of China
| | - Xian Wang
- Key Laboratory of Systems Bioengineering MOE, Key Laboratory for Green Chemical Technology MOE, Tianjin University, Tianjin 300072, People's Republic of China
| | - Jinli Zhang
- Key Laboratory of Systems Bioengineering MOE, Key Laboratory for Green Chemical Technology MOE, Tianjin University, Tianjin 300072, People's Republic of China
| | - Wei Li
- Key Laboratory of Systems Bioengineering MOE, Key Laboratory for Green Chemical Technology MOE, Tianjin University, Tianjin 300072, People's Republic of China.
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18
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Trojanowicz M, Kaniewska M. Flow methods in chiral analysis. Anal Chim Acta 2013; 801:59-69. [DOI: 10.1016/j.aca.2013.09.025] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2013] [Revised: 08/31/2013] [Accepted: 09/10/2013] [Indexed: 11/30/2022]
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19
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Zhang Z, Wu L, Wang J, Ren J, Qu X. A Pt-nanoparticle electrocatalytic assay used for PCR-free sensitive telomerase detection. Chem Commun (Camb) 2013; 49:9986-8. [DOI: 10.1039/c3cc45904g] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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