1
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Lee J, Yang M, Song WJ. The expanded landscape of metalloproteins by genetic incorporation of noncanonical amino acids. B KOREAN CHEM SOC 2022. [DOI: 10.1002/bkcs.12635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Jaehee Lee
- Department of Chemistry Seoul National University Seoul South Korea
| | - Minwoo Yang
- Department of Chemistry Seoul National University Seoul South Korea
| | - Woon Ju Song
- Department of Chemistry Seoul National University Seoul South Korea
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2
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Chiari L, Carpentier P, Kieffer-Jaquinod S, Gogny A, Perard J, Ravanel S, Cobessi D, Ménage S, Dumas R, Hamelin O. LEAFY protein crystals with a honeycomb structure as a platform for selective preparation of outstanding stable bio-hybrid materials. NANOSCALE 2021; 13:8901-8908. [PMID: 33949561 DOI: 10.1039/d1nr00268f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Well-organized protein assemblies offer many properties that justify their use for the design of innovative bionanomaterials. Herein, crystals of the oligomerization domain of the LEAFY protein from Ginkgo biloba, organized in a honeycomb architecture, were used as a modular platform for the selective grafting of a ruthenium-based complex. The resulting bio-hybrid crystalline material was fully characterized by UV-visible and Raman spectroscopy and by mass spectrometry and LC-MS analysis after selective enzymatic digestion. Interestingly, insertion of complexes within the tubular structure affords an impressive increase in stability of the crystals, eluding the use of stabilizing cross-linking strategies.
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Affiliation(s)
- Lucile Chiari
- Univ. Grenoble Alpes, CEA, CNRS, IRIG-LCBM, UMR5249, 38000, Grenoble, France.
| | - Philippe Carpentier
- Univ. Grenoble Alpes, CEA, CNRS, IRIG-LCBM, UMR5249, 38000, Grenoble, France. and ESRF, the European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France
| | | | - Alice Gogny
- Univ. Grenoble Alpes, CEA, CNRS, IRIG-LCBM, UMR5249, 38000, Grenoble, France.
| | - Julien Perard
- Univ. Grenoble Alpes, CEA, CNRS, IRIG-LCBM, UMR5249, 38000, Grenoble, France.
| | - Stéphane Ravanel
- Univ. Grenoble Alpes, CEA, CNRS, INRAE, IRIG-DBSCI-LPCV 38000, Grenoble, France
| | - David Cobessi
- Univ. Grenoble Alpes, CEA, CNRS, IBS 38000, Grenoble, France
| | - Stéphane Ménage
- Univ. Grenoble Alpes, CEA, CNRS, IRIG-LCBM, UMR5249, 38000, Grenoble, France.
| | - Renaud Dumas
- Univ. Grenoble Alpes, CEA, CNRS, INRAE, IRIG-DBSCI-LPCV 38000, Grenoble, France
| | - Olivier Hamelin
- Univ. Grenoble Alpes, CEA, CNRS, IRIG-LCBM, UMR5249, 38000, Grenoble, France.
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3
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Sun H, Li Y, Yu S, Liu J. Hierarchical Self-Assembly of Proteins Through Rationally Designed Supramolecular Interfaces. Front Bioeng Biotechnol 2020; 8:295. [PMID: 32426335 PMCID: PMC7212437 DOI: 10.3389/fbioe.2020.00295] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Accepted: 03/19/2020] [Indexed: 12/11/2022] Open
Abstract
With the increasing advances in the basic understanding of pathogenesis mechanism and fabrication of advanced biological materials, protein nanomaterials are being developed for their potential bioengineering research and biomedical applications. Among different fabrication strategies, supramolecular self-assembly provides a versatile approach to construct hierarchical nanostructures from polyhedral cages, filaments, tubules, monolayer sheets to even cubic crystals through rationally designed supramolecular interfaces. In this mini review, we will briefly recall recent progress in reconstituting protein interfaces for hierarchical self-assembly and classify by the types of designed protein-protein interactions into receptor-ligand recognition, electrostatic interaction, metal coordination, and non-specific interaction networks. Moreover, some attempts on functionalization of protein superstructures for bioengineering and/or biomedical applications are also shortly discussed. We believe this mini review will outline the stream of hierarchical self-assembly of proteins through rationally designed supramolecular interfaces, which would open minds in visualizing protein-protein recognition and assembly in living cells and organisms, and even constructing multifarious functional bionanomaterials.
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Affiliation(s)
- Hongcheng Sun
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Yan Li
- Key Laboratory of Organosilicon Chemistry and Material Technology, Ministry of Education, Hangzhou Normal University, Hangzhou, China
| | - Shuangjiang Yu
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Junqiu Liu
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
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4
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Ferraro G, Monti DM, Amoresano A, Pontillo N, Petruk G, Pane F, Cinellu MA, Merlino A. Gold-based drug encapsulation within a ferritin nanocage: X-ray structure and biological evaluation as a potential anticancer agent of the Auoxo3-loaded protein. Chem Commun (Camb) 2018; 52:9518-21. [PMID: 27326513 DOI: 10.1039/c6cc02516a] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Auoxo3, a cytotoxic gold(iii) compound, was encapsulated within a ferritin nanocage. Inductively coupled plasma mass spectrometry, circular dichroism, UV-Vis absorption spectroscopy and X-ray crystallography confirm the potential-drug encapsulation. The structure shows that naked Au(i) ions bind to the side chains of Cys48, His49, His114, His114 and Cys126, Cys126, His132, His147. The gold-encapsulated nanocarrier has a cytotoxic effect on different aggressive human cancer cells, whereas it is significantly less cytotoxic for non-tumorigenic cells.
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Affiliation(s)
- Giarita Ferraro
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy.
| | - Daria Maria Monti
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy.
| | - Angela Amoresano
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy.
| | - Nicola Pontillo
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy.
| | - Ganna Petruk
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy.
| | - Francesca Pane
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy.
| | - Maria Agostina Cinellu
- Department of Chemistry and Pharmacy, University of Sassari, Via Vienna 2, 07100 Sassari, Italy and CIRCC, Consorzio Interuniversitario Reattività Chimica e Catalisi, Università di Bari, Via Celso Ulpiani 27, 70126 Bari, Italy
| | - Antonello Merlino
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Via Cintia, I-80126, Napoli, Italy. and CNR Institute of Biostructures and Bioimages, Via Mezzocannone 16, I-80126, Napoli, Italy
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5
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Affiliation(s)
- Stephan Tetter
- Laboratory of Organic Chemistry; ETH Zürich; 8093 Zurich Switzerland
| | - Donald Hilvert
- Laboratory of Organic Chemistry; ETH Zürich; 8093 Zurich Switzerland
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6
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Schmidt S, Castiglione K, Kourist R. Overcoming the Incompatibility Challenge in Chemoenzymatic and Multi-Catalytic Cascade Reactions. Chemistry 2017; 24:1755-1768. [PMID: 28877401 DOI: 10.1002/chem.201703353] [Citation(s) in RCA: 107] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Indexed: 01/01/2023]
Abstract
Multi-catalytic cascade reactions bear a great potential to minimize downstream and purification steps, leading to a drastic reduction of the produced waste. In many examples, the compatibility of chemo- and biocatalytic steps could be easily achieved. Problems associated with the incompatibility of the catalysts and their reactions, however, are very frequent. Cascade-like reactions can hardly occur in this way. One possible solution to combine, in principle, incompatible chemo- and biocatalytic reactions is the defined control of the microenvironment by compartmentalization or scaffolding. Current methods for the control of the microenvironment of biocatalysts go far beyond classical enzyme immobilization and are thus believed to be very promising tools to overcome incompatibility issues and to facilitate the synthetic application of cascade reactions. In this Minireview, we will summarize recent synthetic examples of (chemo)enzymatic cascade reactions and outline promising methods for their spatial control either by using bio-derived or synthetic systems.
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Affiliation(s)
- Sandy Schmidt
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria
| | - Kathrin Castiglione
- Institute of Biochemical Engineering, Technical University of Munich, Boltzmannstr. 15, 85748, Garching, Germany
| | - Robert Kourist
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria
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7
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Tetter S, Hilvert D. Enzyme Encapsulation by a Ferritin Cage. Angew Chem Int Ed Engl 2017; 56:14933-14936. [PMID: 28902449 DOI: 10.1002/anie.201708530] [Citation(s) in RCA: 70] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2017] [Indexed: 12/13/2022]
Abstract
Ferritins, conserved across all kingdoms of life, are protein nanocages that evolved to mineralize iron. The last several decades have shown that these cages have considerable technological and medical potential owing to their stability and tolerance to modification, as well as their ability to template nanoparticle synthesis and incorporate small molecules. Here we show that it is possible to encapsulate proteins in a ferritin cage by exploiting electrostatic interactions with its negatively charged interior. Positively supercharged green fluorescent protein is efficiently taken up by Archaeoglobus fulgidus ferritin in a tunable fashion. Moreover, several enzymes were readily incorporated when genetically tethered to this fluorescent protein. These fusion proteins retained high catalytic activity and showed increased tolerance to proteolysis and heat. Equipping ferritins with enzymatic activity paves the way for many new nanotechnological and pharmacological applications.
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Affiliation(s)
- Stephan Tetter
- Laboratory of Organic Chemistry, ETH Zürich, 8093, Zurich, Switzerland
| | - Donald Hilvert
- Laboratory of Organic Chemistry, ETH Zürich, 8093, Zurich, Switzerland
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8
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Kovačević M, Kodrin I, Roca S, Molčanov K, Shen Y, Adhikari B, Kraatz H, Barišić L. Helically Chiral Peptides That Contain Ferrocene‐1,1′‐diamine Scaffolds as a Turn Inducer. Chemistry 2017; 23:10372-10395. [DOI: 10.1002/chem.201701602] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Indexed: 01/08/2023]
Affiliation(s)
- Monika Kovačević
- Department of Chemistry and BiochemistryFaculty of Food Technology and BiotechnologyUniversity of Zagreb Pierottijeva 6 Zagreb Croatia
| | - Ivan Kodrin
- Department of ChemistryFaculty of ScienceUniversity of Zagreb Horvatovac 102a Zagreb Croatia
| | - Sunčica Roca
- NMR CentreRuđer Bošković Institute Bijenička cesta 54 Zagreb Croatia
| | - Krešimir Molčanov
- Division of Physical ChemistryRuđer Bošković Institute Bijenička cesta 54 Zagreb Croatia
| | - Yuning Shen
- Department of Physical and Environmental SciencesUniversity of Toronto 1265 Military Trail Toronto M1C 1 A4 Canada
| | - Bimalendu Adhikari
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) Mohali, Knowledge City, Sector 81, S. A. S. Nagar, Manauli PO Punjab 140306 India
| | - Heinz‐Bernhard Kraatz
- Department of Physical and Environmental SciencesUniversity of Toronto 1265 Military Trail Toronto M1C 1 A4 Canada
- Department of ChemistryUniversity of Toronto 80 St. George Street Toronto Ontario M5S 3H6 Canada
| | - Lidija Barišić
- Department of Chemistry and BiochemistryFaculty of Food Technology and BiotechnologyUniversity of Zagreb Pierottijeva 6 Zagreb Croatia
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9
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Li X, Bai Y, Huang Z, Si C, Dong Z, Luo Q, Liu J. A highly controllable protein self-assembly system with morphological versatility induced by reengineered host-guest interactions. NANOSCALE 2017; 9:7991-7997. [PMID: 28574092 DOI: 10.1039/c7nr01612c] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Manipulating proteins to self-assemble into highly ordered nanostructures not only provides insights into the natural protein assembly process but also allows access to advanced biomaterials. Host-guest interactions have been widely used in the construction of artificial protein assemblies in recent years. CB[8] can selectively associate with two tripeptide Phe-Gly-Gly (FGG) tags with an extraordinarily high binding affinity (Kter = 1.5 × 1011 M-2). However, the FGG tags utilized before are all fixed to the N-termini via genetic fusion; this spatial limitation greatly confined the availability of the CB[8]/FGG pair in the construction of more sophisticated protein nanostructures. Here we first designed and synthesized a maleimide-functionalized Phe-Gly-Gly tag as a versatile site-specific protein modification tool; this designed tag can site-selectively introduce desired guest moieties onto protein surfaces for host-guest driven protein assembly. When regulating the self-assembly process of proteins and CB[8], the constructed protein nanosystem can exhibit distinctive morphological diversities ranging from nanorings, nanospirals, nanowires to superwires. This work developed a new strategy for site-specific protein modification of the CB[8] binding tag and provides a possible direction for the construction of 'smart', dynamic self-assembly systems.
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Affiliation(s)
- Xiumei Li
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
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10
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Wang SZ, Zhang YH, Ren H, Wang YL, Jiang W, Fang BS. Strategies and perspectives of assembling multi-enzyme systems. Crit Rev Biotechnol 2017; 37:1024-1037. [PMID: 28423958 DOI: 10.1080/07388551.2017.1303803] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Multi-enzyme complexes have the potential to achieve high catalytic efficiency for sequence reactions due to their advantages in eliminating product inhibition, facilitating intermediate transfer and in situ regenerating cofactors. Constructing functional multi-enzyme systems to mimic natural multi-enzyme complexes is of great interest for multi-enzymatic biosynthesis and cell-free synthetic biotransformation, but with many challenges. Currently, various assembly strategies have been developed based on the interaction of biomacromolecules such as DNA, peptide and scaffolding protein. On the other hand, chemical-induced assembly is based on the affinity of enzymes with small molecules including inhibitors, cofactors and metal ions has the advantage of simplicity, site-to-site oriented structure control and economy. This review summarizes advances and progresses employing these strategies. Furthermore, challenges and perspectives in designing multi-enzyme systems are highlighted.
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Affiliation(s)
- Shi-Zhen Wang
- a Department of Chemical and Biochemical Engineering , College of Chemistry and Chemical Engineering, Xiamen University , Xiamen , China.,b The Key Lab for Synthetic Biotechnology of Xiamen City, Xiamen University , Xiamen , China.,c State-Province Joint Engineering Laboratory of Marine Bioproducts and Technology, Xiamen University , Xiamen , China
| | - Yong-Hui Zhang
- a Department of Chemical and Biochemical Engineering , College of Chemistry and Chemical Engineering, Xiamen University , Xiamen , China
| | - Hong Ren
- a Department of Chemical and Biochemical Engineering , College of Chemistry and Chemical Engineering, Xiamen University , Xiamen , China
| | - Ya-Li Wang
- a Department of Chemical and Biochemical Engineering , College of Chemistry and Chemical Engineering, Xiamen University , Xiamen , China
| | - Wei Jiang
- a Department of Chemical and Biochemical Engineering , College of Chemistry and Chemical Engineering, Xiamen University , Xiamen , China
| | - Bai-Shan Fang
- a Department of Chemical and Biochemical Engineering , College of Chemistry and Chemical Engineering, Xiamen University , Xiamen , China.,b The Key Lab for Synthetic Biotechnology of Xiamen City, Xiamen University , Xiamen , China.,d The Key Laboratory for Chemical Biology of Fujian Province, Xiamen University , Xiamen , China
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11
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Yang G, Kochovski Z, Ji Z, Lu Y, Chen G, Jiang M. Three-dimensional protein assemblies directed by orthogonal non-covalent interactions. Chem Commun (Camb) 2016; 52:9687-90. [PMID: 27407068 DOI: 10.1039/c6cc04250c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
In this report, an orthogonal non-covalent interaction strategy based on specific recognition between sugar and protein, and host-guest interaction, was employed to construct artificial three dimensional (3D) protein assemblies in the laboratory.
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Affiliation(s)
- Guang Yang
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai, 200433, China.
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12
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Qiao SP, Lang C, Wang RD, Li XM, Yan TF, Pan TZ, Zhao LL, Fan XT, Zhang X, Hou CX, Luo Q, Xu JY, Liu JQ. Metal induced self-assembly of designed V-shape protein into 2D wavy supramolecular nanostructure. NANOSCALE 2016; 8:333-341. [PMID: 26612683 DOI: 10.1039/c5nr06378g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
In order to understand and imitate the more complex bio-processes and fascinating functions in nature, protein self-assembly has been studied and has attracted more and more interest in recent years. Artificial self-assemblies of proteins have been constructed through many strategies. However, the design of complicated protein self-assemblies utilizing the special profile of building blocks remains a challenge. We herein report linear and 2D nanostructures constructed from a V shape SMAC protein and induced by metal coordination. Zigzag nanowires and wavy 2D nanostructures have been demonstrated by AFM and TEM. The zigzag nanowires can translate to a 2D nanostructure with an excess of metal ions, which reveals the step by step assembly process. Fluorescence and UV/Vis spectra have also been obtained to further study the mechanism and process of self-assembly. Upon the protein nanostructure, fluorescence resonance energy transfer (FRET) could also be detected using fluorescein modified proteins as building blocks. This article provides an approach for designing and controlling self-assembled protein nanostructures with a distinctive topological morphology.
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Affiliation(s)
- S P Qiao
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - C Lang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - R D Wang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - X M Li
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - T F Yan
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - T Z Pan
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - L L Zhao
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - X T Fan
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - X Zhang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - C X Hou
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - Q Luo
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - J Y Xu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
| | - J Q Liu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
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13
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Sun H, Zhao L, Wang T, An G, Fu S, Li X, Deng X, Liu J. Photocontrolled reversible morphology conversion of protein nanowires mediated by an azobenzene-cored dendrimer. Chem Commun (Camb) 2016; 52:6001-4. [DOI: 10.1039/c6cc01730d] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Photocontrolled protein nanowires with reversible morphology were constructed through photoisomerizable azobenzene-cored dendrimer evoked protein self-assembly.
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Affiliation(s)
- Hongcheng Sun
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Linlu Zhao
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Tingting Wang
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Guo An
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Shuang Fu
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Xiumei Li
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Xiaoli Deng
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
| | - Junqiu Liu
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- People's Republic of China
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14
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Maity B, Fukumori K, Abe S, Ueno T. Immobilization of two organometallic complexes into a single cage to construct protein-based microcompartments. Chem Commun (Camb) 2016; 52:5463-6. [DOI: 10.1039/c6cc00679e] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Two different organometallic complexes were immobilized into a single ferritin protein cage which was crystallized to determine each binding sites.
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Affiliation(s)
- Basudev Maity
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Kazuki Fukumori
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Satoshi Abe
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Takafumi Ueno
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
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15
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Fan J, Ding L, Bo Y, Fang Y. Fluorescent Ensemble Based on Bispyrene Fluorophore and Surfactant Assemblies: Sensing and Discriminating Proteins in Aqueous Solution. ACS APPLIED MATERIALS & INTERFACES 2015; 7:22487-22496. [PMID: 26414441 DOI: 10.1021/acsami.5b06604] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A particular bispyrene fluorophore (1) with two pyrene moieties covalently linked via a hydrophilic spacer was synthesized. Fluorescence measurements reveal that the fluorescence emission of 1 could be well modulated by a cationic surfactant, dodecyltrimethylammonium bromide (DTAB). Protein sensing studies illustrate that the selected ensemble based on 1/DTAB assemblies exhibits ratiometric responses to nonmetalloproteins and turn-off responses to metalloproteins, which can be used to differentiate the two types of proteins. Moreover, negatively charged nonmetalloproteins can be discriminated from the positively charged ones according to the difference in ratiometric responses. Fluorescence sensing studies with control bispyrenes indicate that the polarity of the spacer connecting two pyrene moieties plays an important role in locating bispyrene fluorophore in DTAB assemblies, which further influences its sensing behaviors to noncovalent interacting proteins. This study sheds light on the influence of the probe structure on the sensing performance of a fluorescent ensemble based on probe and surfactant assemblies.
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Affiliation(s)
- Junmei Fan
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University , Xi'an 710062, P. R. China
| | - Liping Ding
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University , Xi'an 710062, P. R. China
| | - Yu Bo
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University , Xi'an 710062, P. R. China
| | - Yu Fang
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University , Xi'an 710062, P. R. China
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16
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Spa SJ, Bunschoten A, Rood MTM, Peters RJB, Koster AJ, van Leeuwen FWB. Orthogonal Functionalization of Ferritin via Supramolecular Re‐Assembly. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500386] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Silvia J. Spa
- Interventional Molecular Imaging Laboratory, Department of Radiology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands, http://www.interventionalmolecularimaging.com
| | - Anton Bunschoten
- Interventional Molecular Imaging Laboratory, Department of Radiology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands, http://www.interventionalmolecularimaging.com
| | - Marcus T. M. Rood
- Interventional Molecular Imaging Laboratory, Department of Radiology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands, http://www.interventionalmolecularimaging.com
| | - Ruud J. B. Peters
- RIKILT‐BU Contaminants and Toxins, Wageningen University, 6708 WB Wageningen, The Netherlands
| | - Abraham J. Koster
- Molecular Cell Biology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands
| | - Fijs W. B. van Leeuwen
- Interventional Molecular Imaging Laboratory, Department of Radiology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands, http://www.interventionalmolecularimaging.com
- Laboratory of Bio Nano Technology, Wageningen University, 6708 PB Wageningen, The Netherlands
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17
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Wang JCY, Zlotnick A, Mecinović J. Transmission electron microscopy enables the reconstruction of the catenane and ring forms of CS2 hydrolase. Chem Commun (Camb) 2015; 50:10281-3. [PMID: 25056142 DOI: 10.1039/c4cc04650a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Transmission electron microscopic studies on CS2 hydrolase provide direct evidence for the existence of the hexadecameric catenane and octameric ring topologies. Reconstructions of both protein assemblies are in good agreement with crystallographic analyses of the catenane and ring forms of CS2 hydrolase.
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Affiliation(s)
- Joseph Che-Yen Wang
- Molecular & Cellular Biochemistry Department, Simon Hall 217, 212 S. Hawthorne Drive, Indiana University, Bloomington, IN 47405, USA.
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18
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Hirai K, Yeom B, Chang SH, Chi H, Mansfield JF, Lee B, Lee S, Uher C, Kotov NA. Coordination Assembly of Discoid Nanoparticles. Angew Chem Int Ed Engl 2015; 54:8966-70. [DOI: 10.1002/anie.201502057] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Indexed: 11/08/2022]
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19
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Hirai K, Yeom B, Chang SH, Chi H, Mansfield JF, Lee B, Lee S, Uher C, Kotov NA. Coordination Assembly of Discoid Nanoparticles. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201502057] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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20
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Use of the confined spaces of apo-ferritin and virus capsids as nanoreactors for catalytic reactions. Curr Opin Chem Biol 2015; 25:88-97. [DOI: 10.1016/j.cbpa.2014.12.026] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Revised: 12/11/2014] [Accepted: 12/15/2014] [Indexed: 01/17/2023]
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21
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Tabe H, Shimoi T, Fujita K, Abe S, Ijiri H, Tsujimoto M, Kuchimaru T, Kizaka-Kondo S, Mori H, Kitagawa S, Ueno T. Design of a CO-releasing Extracellular Scaffold Using in Vivo Protein Crystals. CHEM LETT 2015. [DOI: 10.1246/cl.141035] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Hiroyasu Tabe
- Graduate School of Engineering, Kyoto University
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
| | - Takuya Shimoi
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Kenta Fujita
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Satoshi Abe
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Hiroshi Ijiri
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Masahiko Tsujimoto
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
| | - Takahiro Kuchimaru
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Shinae Kizaka-Kondo
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Hajime Mori
- Insect Biomedical Research Center, Kyoto Institute of Technology
| | - Susumu Kitagawa
- Graduate School of Engineering, Kyoto University
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
| | - Takafumi Ueno
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
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22
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Pordea A. Metal-binding promiscuity in artificial metalloenzyme design. Curr Opin Chem Biol 2015; 25:124-32. [PMID: 25603469 DOI: 10.1016/j.cbpa.2014.12.035] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 12/16/2014] [Accepted: 12/18/2014] [Indexed: 01/16/2023]
Abstract
This review presents recent examples of metal-binding promiscuity in protein scaffolds and highlights the effect of metal variation on catalytic functionality. Naturally evolved binding sites, as well as unnatural amino acids and cofactors can bind a diverse range of metals, including non-biological transition elements. Computational screening and rational design have been successfully used to create promiscuous binding-sites. Incorporation of non-native metals into proteins expands the catalytic range of transformations catalysed by enzymes and enhances their potential for application in chemicals synthesis.
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Affiliation(s)
- Anca Pordea
- Department of Chemical and Environmental Engineering, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom.
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23
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Abe S, Tokura Y, Pal R, Komura N, Imamura A, Matsumoto K, Ijiri H, Sanghamitra NJM, Tabe H, Ando H, Kiso M, Mori H, Kitagawa S, Ueno T. Surface Functionalization of Protein Crystals with Carbohydrate Using Site-selective Bioconjugation. CHEM LETT 2015. [DOI: 10.1246/cl.140865] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Satoshi Abe
- Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | - Yu Tokura
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
| | - Rita Pal
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
- Department of Applied Bioorganic Chemistry, Gifu University
| | - Naoko Komura
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
- Department of Applied Bioorganic Chemistry, Gifu University
| | | | | | - Hiroshi Ijiri
- Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
| | | | - Hiroyasu Tabe
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
| | - Hiromune Ando
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
- Department of Applied Bioorganic Chemistry, Gifu University
| | - Makoto Kiso
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
- Department of Applied Bioorganic Chemistry, Gifu University
| | - Hajime Mori
- Insect Biomedical Research Center, Kyoto Institute of Technology
| | - Susumu Kitagawa
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University
| | - Takafumi Ueno
- Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology
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24
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Abstract
Albumin emerged as a biocatalyst in 1980 and the continuing interest in this protein is proved by numerous papers.
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Affiliation(s)
| | - Nicoletta Gaggero
- Dipartimento di Scienze Farmaceutiche
- Sezione di Chimica Generale e Organica “A. Marchesini”
- Università degli Studi di Milano
- 20133-Milano
- Italia
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25
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Tabbasum K, Rao CP. Zn2+ and Cu2+ induced nanosheets and nanotubes in six different lectins by TEM. RSC Adv 2015. [DOI: 10.1039/c5ra00481k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
Zn2+ and Cu2+ induced supramolecular assemblies of lectins resulted in the formation of nanosheets in case of Zn2+ and both nanosheets and nanotubes in case of Cu2+ having different features characteristic of the lectin and the metal ion present. These nanostructures are unprecedented and would lead to major advances in nanobiomaterial science.
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Affiliation(s)
- Khatija Tabbasum
- Bioinorganic Laboratory
- Department of Chemistry
- Indian Institute of Technology Bombay
- Mumbai 400 076
- India
| | - Chebrolu Pulla Rao
- Bioinorganic Laboratory
- Department of Chemistry
- Indian Institute of Technology Bombay
- Mumbai 400 076
- India
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26
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Nakajima H, Kondo M, Nakane T, Abe S, Nakao T, Watanabe Y, Ueno T. Construction of an enterobactin analogue with symmetrically arranged monomer subunits of ferritin. Chem Commun (Camb) 2015; 51:16609-12. [DOI: 10.1039/c5cc06904a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The symmetric arrangement of ferritin subunits served as a versatile foundation to produce a symmetric coordination space with designed ligands.
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Affiliation(s)
- Hiroshi Nakajima
- Division of Molecular Materials Science
- Graduate School of Science
- Osaka City University
- Osaka
- Japan
| | - Mio Kondo
- Department of Chemistry
- Graduate School of Science
- Nagoya University
- Nagoya
- Japan
| | - Taiki Nakane
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Satoshi Abe
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Takahiro Nakao
- Department of Chemistry
- Graduate School of Science
- Nagoya University
- Nagoya
- Japan
| | | | - Takafumi Ueno
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
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27
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Abstract
Protein crystals have been functionalized for applications in preparation of inorganic materials, asymmetric catalysis and accumulation of functional compounds.
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Affiliation(s)
- Satoshi Abe
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Takafumi Ueno
- Department of Biomolecular Engineering
- Graduate School of Bioscience and Biotechnology
- Tokyo Institute of Technology
- Midori-ku
- Japan
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28
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Tabe H, Fujita K, Abe S, Tsujimoto M, Kuchimaru T, Kizaka-Kondoh S, Takano M, Kitagawa S, Ueno T. Preparation of a cross-linked porous protein crystal containing Ru carbonyl complexes as a CO-releasing extracellular scaffold. Inorg Chem 2014; 54:215-20. [PMID: 25494847 DOI: 10.1021/ic502159x] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Protein crystals generally are stable solid protein assemblies. Certain protein crystals are suitable for use as nanovessels for immobilizing metal complexes. Here we report the preparation of ruthenium carbonyl-incorporated cross-linked hen egg white lysozyme crystals (Ru·CL-HEWL). Ru·CL-HEWL retains a Ru carbonyl moiety that can release CO, although a composite of Ru carbonyl-HEWL dissolved in buffer solution (Ru·HEWL) does not release CO. We found that treatment of cells with Ru·CL-HEWL significantly increased nuclear factor kappa B (NF-κB) activity as a cellular response to CO. These results demonstrate that Ru·CL-HEWL has potential for use as an artificial extracellular scaffold suitable for transport and release of a gas molecule.
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Affiliation(s)
- Hiroyasu Tabe
- Graduate School of Engineering, Kyoto University, Katsura , Nishikyo-ku, Kyoto 615-8510, Japan
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29
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Degtyar E, Harrington MJ, Politi Y, Fratzl P. Die Bedeutung von Metallionen für die mechanischen Eigenschaften von Biomaterialien auf Proteinbasis. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201404272] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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30
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Degtyar E, Harrington MJ, Politi Y, Fratzl P. The Mechanical Role of Metal Ions in Biogenic Protein-Based Materials. Angew Chem Int Ed Engl 2014; 53:12026-44. [DOI: 10.1002/anie.201404272] [Citation(s) in RCA: 168] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Indexed: 12/23/2022]
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31
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Inaba H, Kitagawa S, Ueno T. Protein Needles as Molecular Templates for Artificial Metalloenzymes. Isr J Chem 2014. [DOI: 10.1002/ijch.201400097] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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32
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Tabe H, Abe S, Hikage T, Kitagawa S, Ueno T. Porous Protein Crystals as Catalytic Vessels for Organometallic Complexes. Chem Asian J 2014; 9:1373-8. [DOI: 10.1002/asia.201301347] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2013] [Revised: 12/26/2013] [Indexed: 01/19/2023]
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33
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Sontz PA, Song WJ, Tezcan FA. Interfacial metal coordination in engineered protein and peptide assemblies. Curr Opin Chem Biol 2014; 19:42-9. [PMID: 24780278 DOI: 10.1016/j.cbpa.2013.12.013] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Revised: 12/12/2013] [Accepted: 12/12/2013] [Indexed: 12/29/2022]
Abstract
Metal ions are frequently found in natural protein-protein interfaces, where they stabilize quaternary or supramolecular protein structures, mediate transient protein-protein interactions, and serve as catalytic centers. Paralleling these natural roles, coordination chemistry of metal ions is being increasingly utilized in creative ways toward engineering and controlling the assembly of functional supramolecular peptide and protein architectures. Here we provide a brief overview of this emerging branch of metalloprotein/peptide engineering and highlight a few select examples from the recent literature that best capture the diversity and future potential of approaches that are being developed.
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Affiliation(s)
- Pamela A Sontz
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, United States
| | - Woon Ju Song
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, United States
| | - F Akif Tezcan
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, United States.
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34
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Ding Y, Shi L, Wei H. Protein-directed approaches to functional nanomaterials: a case study of lysozyme. J Mater Chem B 2014; 2:8268-8291. [DOI: 10.1039/c4tb01235f] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Using lysozyme as a model, protein-directed approaches to functional nanomaterials were reviewed, making rational materials design possible in the future.
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Affiliation(s)
- Yubin Ding
- Department of Biomedical Engineering
- Aerosol Bioeffects and Health Research Center
- College of Engineering and Applied Sciences
- Nanjing National Laboratory of Microstructures
- Nanjing University
| | - Leilei Shi
- Department of Biomedical Engineering
- Aerosol Bioeffects and Health Research Center
- College of Engineering and Applied Sciences
- Nanjing National Laboratory of Microstructures
- Nanjing University
| | - Hui Wei
- Department of Biomedical Engineering
- Aerosol Bioeffects and Health Research Center
- College of Engineering and Applied Sciences
- Nanjing National Laboratory of Microstructures
- Nanjing University
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35
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Artificial Metalloenzymes Constructed From Hierarchically-Assembled Proteins. Chem Asian J 2013; 8:1646-60. [DOI: 10.1002/asia.201300347] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2013] [Indexed: 01/20/2023]
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