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Zhang ZH, Lin RL, Yu XY, Chen LX, Tao Z, Xiao X, Wei G, Redshaw C, Liu JX. Encapsulation of l-valine, d-leucine and d-methionine by cucurbit[8]uril. CrystEngComm 2022. [DOI: 10.1039/d1ce01513c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The binding interactions of cucurbit[8]uril (Q[8]) with l-valine, d-leucine, and d-methionine, both in aqueous solution and solid state, have been studied by 1H NMR spectroscopy and X-ray crystallography.
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Affiliation(s)
- Zeng-Hui Zhang
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, P. R. China
| | - Rui-Lian Lin
- College of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243002, P. R. China
| | - Xiang-Yun Yu
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, P. R. China
| | - Li-Xia Chen
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, P. R. China
| | - Zhu Tao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, P. R. China
| | - Xin Xiao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang 550025, P. R. China
| | - Gang Wei
- CSIRO Mineral Resources, PO Box 218, Lindfield, NSW 2070, Australia
| | - Carl Redshaw
- Department of Chemistry, University of Hull, Hull HU6 7RX, UK
| | - Jing-Xin Liu
- College of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan 243002, P. R. China
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2
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Mahmudov KT, Huseynov FE, Aliyeva VA, Guedes da Silva MFC, Pombeiro AJL. Noncovalent Interactions at Lanthanide Complexes. Chemistry 2021; 27:14370-14389. [PMID: 34363268 DOI: 10.1002/chem.202102245] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Indexed: 11/10/2022]
Abstract
Lanthanide complexes have attracted a widespread attention due to their structural diversity, as well as multifunctional and tunable properties. The development of lanthanide based functional materials has often relied on the design of the secondary coordination sphere of the corresponding lanthanide complexes. For instance, usually simple lanthanide salts (solvento complexes) do not catalyze effectively organic reactions or provide low yield of the expected product, whereas the presence of a suitable organic ligand with a noncovalent bond donor or acceptor centre (secondary coordination sphere) modifies the symmetry around the metal centre in lanthanide complexes which then successfully can act as catalysts in both homogenous and heterogenous catalysis. In this minireview, we discuss several relevant examples, based on X-ray crystal structure analyses, in which the hydrogen, halogen, chalcogen, pnictogen, tetrel and rare-earth bonds, as well as cation-π, anion-π, lone pair-π, π-π and pancake interactions, are used as a synthon in the decoration of the secondary coordination sphere of lanthanide complexes.
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Affiliation(s)
- Kamran T Mahmudov
- University of Lisbon Higher Technical Institute: Universidade de Lisboa Instituto Superior Tecnico, CQE, R., 1009 - 001, Lisbon, PORTUGAL
| | - Fatali E Huseynov
- Baku State University, Department of Ecology and Soil Sciences, AZERBAIJAN
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3
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Shan P, Lin R, Liu M, Tao Z, Xiao X, Liu J. Recognition of glycine by cucurbit[5]uril and cucurbit[6]uril: A comparative study of exo- and endo-binding. CHINESE CHEM LETT 2021. [DOI: 10.1016/j.cclet.2021.02.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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4
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Ramberg KO, Engilberge S, Guagnini F, Crowley PB. Protein recognition by cucurbit[6]uril: high affinity N-terminal complexation. Org Biomol Chem 2021; 19:837-844. [PMID: 33406171 DOI: 10.1039/d0ob02356f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The donut-shaped cucurbit[n]urils (Qn, n = 6-8) are rigid macrocyclic receptors with widespread use in protein recognition. To date, most applications have centred on the encapsulation of N-terminal aromatic residues by Q7 or Q8. Less attention has been placed on Q6, which can recognize lysine side chains due to its high affinity for alkylamines. In this work, we investigated protein-Q6 complexation by using NMR spectroscopy. Attempts to crystallize protein-Q6 complexes were thwarted by the crystallization of Q6. We studied four proteins that vary in size, net charge, and lysine content. In addition to Q6 interactions with specific Lys or dimethylated Lys residues, we report striking evidence for N-terminal recognition. High affinity (micromolar) binding occurred with the N-terminal Met-Lys motif present in one of the four model proteins. Engineering this feature into another model protein yielded a similar high affinity site. We also present evidence for Q8 binding at this N-terminal feature. These data expand the cucurbituril toolkit for protein sensing.
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Affiliation(s)
- Kiefer O Ramberg
- School of Chemistry, National University of Ireland Galway, University Road, Galway, H91 TK33, Ireland.
| | - Sylvain Engilberge
- School of Chemistry, National University of Ireland Galway, University Road, Galway, H91 TK33, Ireland.
| | - Francesca Guagnini
- School of Chemistry, National University of Ireland Galway, University Road, Galway, H91 TK33, Ireland.
| | - Peter B Crowley
- School of Chemistry, National University of Ireland Galway, University Road, Galway, H91 TK33, Ireland.
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5
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Guagnini F, Engilberge S, Ramberg KO, Pérez J, Crowley PB. Engineered assembly of a protein–cucurbituril biohybrid. Chem Commun (Camb) 2020; 56:360-363. [DOI: 10.1039/c9cc07198a] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Additional Q7 binding sites drive protein aggregation in solution and statistical disorder in the crystalline biohybrid suggest new possibilities for protein-based materials.
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Affiliation(s)
| | | | - Kiefer O. Ramberg
- School of Chemistry
- National University of Ireland Galway
- Galway
- Ireland
| | - Javier Pérez
- Synchrotron SOLEIL
- L’Orme des Merisiers
- 91192 Gif-sur-Yvette Cedex
- France
| | - Peter B. Crowley
- School of Chemistry
- National University of Ireland Galway
- Galway
- Ireland
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6
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Canaj AB, Kakaroni FΕ, Collet A, Milios CJ. α-Amino acids: Natural and artificial building blocks for discrete polymetallic clusters. Polyhedron 2018. [DOI: 10.1016/j.poly.2018.05.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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7
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Qiu X, Wang X, Hou S, Ma H, Tan Y. New lanthanide-based complexes constructed from cucurbit[6]uril: Synthesis, structures and properties. J COORD CHEM 2018. [DOI: 10.1080/00958972.2018.1463096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Xiumin Qiu
- The Key Laboratory of Special Functional Aggregated Materials, Shandong University, Ministry of Education, Jinan, PR China
| | - Xin Wang
- The Key Laboratory of Special Functional Aggregated Materials, Shandong University, Ministry of Education, Jinan, PR China
| | - Shengzhen Hou
- The Key Laboratory of Special Functional Aggregated Materials, Shandong University, Ministry of Education, Jinan, PR China
| | - Haili Ma
- The Key Laboratory of Special Functional Aggregated Materials, Shandong University, Ministry of Education, Jinan, PR China
| | - Yebang Tan
- The Key Laboratory of Special Functional Aggregated Materials, Shandong University, Ministry of Education, Jinan, PR China
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, PR China
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9
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Cucurbit[n]uril-based host–guest-metal ion chemistry: an emerging branch in cucurbit[n]uril chemistry. J INCL PHENOM MACRO 2017. [DOI: 10.1007/s10847-017-0733-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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10
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Thuéry P. Uranyl Complexes as Scaffolding or Spacers for Cucurbit[6]uril Molecules in Homo‐ and Heterometallic Species, Including a Uranyl–Lanthanide Complex. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700283] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Pierre Thuéry
- NIMBE CEA CNRS Université Paris‐Saclay CEA Saclay 91191 Gif‐sur‐Yvette France
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11
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Carter KP, Kalaj M, Cahill CL. Harnessing uranyl oxo atoms via halogen bonding interactions in molecular uranyl materials featuring 2,5-diiodobenzoic acid and N-donor capping ligands. Inorg Chem Front 2017. [DOI: 10.1039/c6qi00352d] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The supramolecular assembly of molecular uranyl species via halogen-oxo interactions and spectroscopic manifestations thereof are probed in the solid state.
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Affiliation(s)
- Korey P. Carter
- Department of Chemistry
- The George Washington University
- Washington
- USA
| | - Mark Kalaj
- Department of Chemistry
- The George Washington University
- Washington
- USA
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12
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Shan PH, Tu SC, Lin RL, Tao Z, Liu JX, Xiao X. Supramolecular complexes of α,α′,δ,δ′-tetramethyl-cucurbit[6]uril binding with enantiomeric amino acids. CrystEngComm 2017. [DOI: 10.1039/c7ce00340d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Barrow SJ, Kasera S, Rowland MJ, del Barrio J, Scherman OA. Cucurbituril-Based Molecular Recognition. Chem Rev 2015; 115:12320-406. [DOI: 10.1021/acs.chemrev.5b00341] [Citation(s) in RCA: 1188] [Impact Index Per Article: 132.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Steven J. Barrow
- Melville
Laboratory for Polymer Synthesis, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Setu Kasera
- Melville
Laboratory for Polymer Synthesis, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Matthew J. Rowland
- Melville
Laboratory for Polymer Synthesis, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Jesús del Barrio
- Melville
Laboratory for Polymer Synthesis, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Oren A. Scherman
- Melville
Laboratory for Polymer Synthesis, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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Thuéry P. Structural variations in terbium(III) complexes with 1,3-adamantanedicarboxylate and diverse co-ligands. J SOLID STATE CHEM 2015. [DOI: 10.1016/j.jssc.2015.01.036] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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15
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Thuéry P. Second‐Sphere Complexation of Thorium(IV) by Cucurbit[6]uril with Included Perrhenate Counterions – Crystal Structure and Hirshfeld Surface Analysis. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500171] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Pierre Thuéry
- CEA, IRAMIS, UMR 3685 NIMBE, Laboratoire de Chimie Moléculaire et Catalyse pour l'Energie (LCMCE) Bât. 125, 91191 Gif‐sur‐Yvette, France
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16
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Francés-Soriano L, González-Béjar M, Pérez-Prieto J. Cucurbit[n]uril-capped upconversion nanoparticles as highly emissive scaffolds for energy acceptors. NANOSCALE 2015; 7:5140-5146. [PMID: 25735726 DOI: 10.1039/c5nr00295h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Spontaneous adsorption of cucurbit[n]uril CB[n] (n=6, 7, and 8) on the surface of naked upconversion nanoparticles (UCNPs), in particular, NaYF4:Er3+(2%),Yb3+(18%) gave rise to UCNP@CB[n] exclusion complexes. These complexes proved to be highly stable as well as highly emissive under near-infrared excitation. By using two tricyclic basic dyes (specifically, methylene blue and pyronin Y) as a proof of concept, we demonstrate that the UCNP@CB[n] (n=6, 7) nanohybrids can form exclusion complexes with this type of dyes via the CB carbonyl free portal, i.e., UCNP@CB@dye hybrids, thus making it possible to locate a high concentration of the dyes close to the UCNP and, consequently, leading to efficient energy transfer from the UCNP to the dye.
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Affiliation(s)
- Laura Francés-Soriano
- Instituto de Ciencia Molecular (ICMol)/Departamento de Química Orgánica, Universidad de Valencia, C/Catedrático José Beltrán 2, 46980, Paterna, Valencia, Spain.
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17
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Ni XL, Xue SF, Tao Z, Zhu QJ, Lindoy LF, Wei G. Advances in the lanthanide metallosupramolecular chemistry of the cucurbit[n]urils. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2014.12.018] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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18
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Polyakova IN, Baulin VE, Ivanova IS, Pyatova EN, Sergienko VS, Tsivadze AY. Crystal and molecular structure of the coordination compounds of Er3+ with 1-(methoxydiphenylphosphoryl)-2-diphenylphosphorylbenzene [ErL 2 1 (NO3)2]2[Er(NO3)2(H2O)5]0.333(NO3)2.333 · 2.833H2O and its ethyl substituted derivative [ErL 2 2 (NO3)2][Er(NO3)5]0.5 · 0.5H2O. CRYSTALLOGR REP+ 2015. [DOI: 10.1134/s1063774515010162] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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19
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Cucurbituril: Chiral Applications. Chirality 2014; 26:712-23. [DOI: 10.1002/chir.22363] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2014] [Revised: 06/23/2014] [Accepted: 07/01/2014] [Indexed: 01/17/2023]
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20
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Carter KP, Pope SJA, Cahill CL. A series of Ln-p-chlorobenzoic acid–terpyridine complexes: lanthanide contraction effects, supramolecular interactions and luminescent behavior. CrystEngComm 2014. [DOI: 10.1039/c3ce42267d] [Citation(s) in RCA: 75] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Carter KP, Zulato CHF, Cahill CL. Exploring supramolecular assembly and luminescent behavior in a series of RE-p-chlorobenzoic acid-1,10-phenanthroline complexes. CrystEngComm 2014. [DOI: 10.1039/c4ce01806k] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Eleven new rare earth (RE)-p-chlorobenzoic acid-1,10-phenanthroline complexes have been synthesized and their structural, supramolecular and luminescent properties have been explored.
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Affiliation(s)
- Korey P. Carter
- Department of Chemistry
- The George Washington University
- Washington, USA
| | - Cecília H. F. Zulato
- Department of Chemistry
- The George Washington University
- Washington, USA
- Laboratory of Functional Materials
- Institute of Chemistry
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