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Cavignac T, Vigier M, Fritsch E, Deniard P, Jobic S, Latouche C. Luminescence Properties of Al 2O 3:Ti in the Blue and Red Regions: A Combined Theoretical and Experimental Study. Inorg Chem 2024; 63:2934-2944. [PMID: 38305189 DOI: 10.1021/acs.inorgchem.3c03476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
Using jointly experimental results and first-principles calculations, we unambiguously assign the underlying mechanisms behind two commonly observed luminescence bands for the Al2O3 material. Indeed, we show that the red band is associated with a Ti3+ d-d transition as expected, while the blue band is the combination of the Ti3+ + O- → Ti4+ + O2- and VO•+e- → VO× de-excitation processes. Thanks to our recent developments, which take into account the vibrational contributions to the electronic transitions in solids, we were able to simulate the luminescence spectra for the different signatures. The excellent agreement with the experiment demonstrates that it should be possible to predict the color of the material with a CIE chromaticity diagram. We also anticipated the luminescence signature of Al2O3:Ti,Ca and Al2O3:Ti,Be that were confirmed by experiment.
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Affiliation(s)
- Théo Cavignac
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, Nantes F-44000, France
| | - Maxence Vigier
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, Nantes F-44000, France
| | - Emmanuel Fritsch
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, Nantes F-44000, France
| | - Philippe Deniard
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, Nantes F-44000, France
| | - Stéphane Jobic
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, Nantes F-44000, France
| | - Camille Latouche
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, Nantes F-44000, France
- Institut Universitaire de France (IUF), Paris F-75005, France
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2
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Brüggemann J, Wolter M, Jacob CR. Quantum-chemical calculation of two-dimensional infrared spectra using localized-mode VSCF/VCI. J Chem Phys 2022; 157:244107. [PMID: 36586972 DOI: 10.1063/5.0135273] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Computational protocols for the simulation of two-dimensional infrared (2D IR) spectroscopy usually rely on vibrational exciton models which require an empirical parameterization. Here, we present an efficient quantum-chemical protocol for predicting static 2D IR spectra that does not require any empirical parameters. For the calculation of anharmonic vibrational energy levels and transition dipole moments, we employ the localized-mode vibrational self-consistent field (L-VSCF)/vibrational configuration interaction (L-VCI) approach previously established for (linear) anharmonic theoretical vibrational spectroscopy [P. T. Panek and C. R. Jacob, ChemPhysChem 15, 3365-3377 (2014)]. We demonstrate that with an efficient expansion of the potential energy surface using anharmonic one-mode potentials and harmonic two-mode potentials, 2D IR spectra of metal carbonyl complexes and dipeptides can be predicted reliably. We further show how the close connection between L-VCI and vibrational exciton models can be exploited to extract the parameters of such models from those calculations. This provides a novel route to the fully quantum-chemical parameterization of vibrational exciton models for predicting 2D IR spectra.
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Affiliation(s)
- Julia Brüggemann
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Mario Wolter
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Christoph R Jacob
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
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3
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Cavignac T, Jobic S, Latouche C. Modeling Luminescence Spectrum of BaZrO 3:Ti Including Vibronic Coupling from First Principles Calculations. J Chem Theory Comput 2022; 18:7714-7721. [PMID: 36346942 DOI: 10.1021/acs.jctc.2c00949] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Herein, we present a methodology based on constrained density functional theory and vibrational mode computations to simulate and interpret the luminescence spectra of periodic solids. A multi-dimension harmonic model is used to combine electronic and vibrational contributions into an overall vibrationally resolved emission spectrum. We applied it to Ti-doped BaZrO3 to accurately reproduce its blue luminescence and unambiguously assign the observed luminescence to a Ti3+ + O- → Ti4+ + O2- charge transfer.
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Affiliation(s)
- Théo Cavignac
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, F-44000Nantes, France
| | - Stéphane Jobic
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, F-44000Nantes, France
| | - Camille Latouche
- Nantes Université, CNRS, Institut des Matériaux de Nantes Jean Rouxel, IMN, F-44000Nantes, France
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4
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Du J, Yao N, Ma X, Wang H, Li Q, Feng Z. Infrared spectra of the SARS-CoV-2 spike receptor-binding domain: Molecular dynamics simulations. Chem Phys Lett 2022; 810:140176. [DOI: 10.1016/j.cplett.2022.140176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2022] [Revised: 10/24/2022] [Accepted: 11/01/2022] [Indexed: 11/06/2022]
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5
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Spectroscopic constants and anharmonic force field of dithioformic acid and its isomers: a theoretical study. J Mol Model 2022; 28:173. [DOI: 10.1007/s00894-022-05166-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Accepted: 05/19/2022] [Indexed: 11/26/2022]
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6
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Virtual Vibrational Spectrometry of Stable Radicals—Necklaced Graphene Molecules. NANOMATERIALS 2022; 12:nano12040597. [PMID: 35214926 PMCID: PMC8877590 DOI: 10.3390/nano12040597] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 02/02/2022] [Accepted: 02/05/2022] [Indexed: 02/04/2023]
Abstract
The article presents results of an extended virtual experiment on graphene molecules performed using the virtual vibrational spectrometer HF Spectrodyn that exploits semiempirical Hartree–Fock approximation. The molecules are composed of flat graphene domains surrounded with heteroatom necklaces. Not existing individually, these molecules are met in practice as basic structure units of complex multilevel structure of all sp2 amorphous carbons. This circumstance deprives the solids’ in vitro spectroscopy of revealing the individual character of basic structural elements, and in silico spectrometry fills this shortcoming. The obtained virtual vibrational spectra allow for drawing first conclusions about the specific features of the vibrational dynamics of the necklaced graphene molecules, caused by spatial structure and packing of their graphene domains as well as by chemical composition of the relevant necklaces. As shown, IR absorption spectra of the molecules are strongly necklace dependent, once becoming a distinct spectral signature of the amorphous body origin. Otherwise, Raman spectra are a spectral mark of the graphene domain’s size and packing, thus disclosing the mystery of their universal D-G-band standard related to graphene-containing materials of various origins.
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7
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Dundas KHM, Beerepoot MTP, Ringholm M, Reine S, Bast R, List NH, Kongsted J, Ruud K, Olsen JMH. Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model. J Chem Theory Comput 2021; 17:3599-3617. [PMID: 34009969 PMCID: PMC8278393 DOI: 10.1021/acs.jctc.0c01323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Indexed: 12/14/2022]
Abstract
We present a fully analytic approach to calculate infrared (IR) and Raman spectra of molecules embedded in complex molecular environments modeled using the fragment-based polarizable embedding (PE) model. We provide the theory for the calculation of analytic second-order geometric derivatives of molecular energies and first-order geometric derivatives of electric dipole moments and dipole-dipole polarizabilities within the PE model. The derivatives are implemented using a general open-ended response theory framework, thus allowing for an extension to higher-order derivatives. The embedding-potential parameters used to describe the environment in the PE model are derived through first-principles calculations, thus allowing a wide variety of systems to be modeled, including solvents, proteins, and other large and complex molecular environments. Here, we present proof-of-principle calculations of IR and Raman spectra of acetone in different solvents. This work is an important step toward calculating accurate vibrational spectra of molecules embedded in realistic environments.
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Affiliation(s)
- Karen
Oda Hjorth Minde Dundas
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Maarten T. P. Beerepoot
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Magnus Ringholm
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Simen Reine
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, N-0315 Oslo, Norway
| | - Radovan Bast
- Department
of Information Technology, UiT The Arctic
University of Norway, N-9037 Tromsø, Norway
| | - Nanna Holmgaard List
- Department
of Chemistry and the PULSE Institute, Stanford
University, 94305 Stanford, California, United States
- SLAC
National Accelerator Laboratory, 94025 Menlo Park, California, United States
| | - Jacob Kongsted
- Department
of Physics, Chemistry and Pharmacy, University
of Southern Denmark, DK-5230 Odense M, Denmark
| | - Kenneth Ruud
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Jógvan Magnus Haugaard Olsen
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
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8
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Yang Q, Fusè M, Bloino J, Barone V. Interplay of stereo-electronic, vibronic and environmental effects in tuning the chiroptical properties of an Ir(III) cyclometalated N-heterocyclic carbene. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 254:119631. [PMID: 33761386 DOI: 10.1016/j.saa.2021.119631] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 02/11/2021] [Accepted: 02/14/2021] [Indexed: 06/12/2023]
Abstract
Chiroptical spectra are among the most suitable techniques for investigating the ground and excited electronic states of chiral systems, but their interpretation is not straightforward and strongly benefits from quantum chemical simulations, provided that the employed computational model is sufficiently accurate and deals properly with stereo-electronic, vibrational averaging and environmental effects. Since the synergy among all these effects is only rarely accounted for, especially for large and flexible organometallic systems, the main aim of this contribution is to illustrate the latest developments of computational approaches rooted into the density functional theory for describing stereo-electronic effects and complemented by effective techniques to deal with vibrational modulation effects and solvatochromic shifts. In this connection, chiral iridium complexes offer an especially suitable case study in view of their bright phosphorescence, which is particularly significant for building effective light emitting diodes (OLEDs) and biomarkers and can be finely tuned by the nature of the metal ligands. For instance, a recently synthesized family of cycloiridiated complexes, KC and KD, bearing a pentahelicenic N-heterocyclic carbene (KB), has shown an enhanced long-lasting, bright phosphorescence. Deeper insights into the still unclear nature and origin of the enhancement could be gained by the interpretation of the chiroptical spectra, which is quite challenging in view of the presence of two sources of chirality, the chiral center on Ir and the chiral axis related to the helicene ligand, in addition to the relativistic effects related to the presence of the Ir center. At the same time, the large dimensions of KC and KD hamper the use of the most sophisticated (but prohibitively expensive) computational models, so that more approximate approaches must be validated on a suitable model compound. To this end, after optimizing the computational scheme on a model system devoid of the helicene moiety (KA), we have performed a comprehensive investigation of the KC and KD spectra, whose interpretation is further aided by novel graphical tools. The discussion and analysis of the results will not be focused on the theoretical background, but, rather, on practical details (specific functional, basis set, vibronic model, solvent regime) with the aim of providing general guidelines for the use of last-generation computational spectroscopy tools also by non-specialists.
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Affiliation(s)
- Qin Yang
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Marco Fusè
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy.
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9
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Barone V, Alessandrini S, Biczysko M, Cheeseman JR, Clary DC, McCoy AB, DiRisio RJ, Neese F, Melosso M, Puzzarini C. Computational molecular spectroscopy. ACTA ACUST UNITED AC 2021. [DOI: 10.1038/s43586-021-00034-1] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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10
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Fecková M, Kahlal S, Roisnel T, Saillard J, Boixel J, Hruzd M, Poul P, Gauthier S, Robin‐le Guen F, Bureš F, Achelle S. Cyclometallated 2‐Phenylpyrimidine Derived Platinum Complexes: Synthesis and Photophysical Properties. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202100155] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Michaela Fecková
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
- Institute of Organic Chemistry and Technology, Faculty of Chemical Technology University of Pardubice Studentská 573 Pardubice 53210 Czech Republic
| | - Samia Kahlal
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Thierry Roisnel
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Jean‐Yves Saillard
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Julien Boixel
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Mariia Hruzd
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Pascal Poul
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Sébastien Gauthier
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Françoise Robin‐le Guen
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
| | - Filip Bureš
- Institute of Organic Chemistry and Technology, Faculty of Chemical Technology University of Pardubice Studentská 573 Pardubice 53210 Czech Republic
| | - Sylvain Achelle
- University Rennes, CNRS Institut des Sciences Chimiques de Rennes – UMR 6226 35000 Rennes France
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11
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Schira R, Latouche C. DFT vs. TDDFT vs. TDA to simulate phosphorescence spectra of Pt- and Ir-based complexes. Dalton Trans 2021; 50:746-753. [DOI: 10.1039/d0dt03614e] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A quantum investigation of the optical (mainly luminescence) properties of twelve transition metal complexes using DFT, TDDFT and TDA computations is presented. Unrestricted DFT and TDA outperform TDDFT for the investigated complexes especially when an Ir centre is present.
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Affiliation(s)
- Romain Schira
- Université de Nantes
- CNRS
- Institut des Matériaux Jean Rouxel
- IMN
- F-44000 Nantes
| | - Camille Latouche
- Université de Nantes
- CNRS
- Institut des Matériaux Jean Rouxel
- IMN
- F-44000 Nantes
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12
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Förster A, Visscher L. Low-Order Scaling G0W0 by Pair Atomic Density Fitting. J Chem Theory Comput 2020; 16:7381-7399. [PMID: 33174743 PMCID: PMC7726916 DOI: 10.1021/acs.jctc.0c00693] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Indexed: 12/18/2022]
Abstract
We derive a low-scaling G0W0 algorithm for molecules using pair atomic density fitting (PADF) and an imaginary time representation of the Green's function and describe its implementation in the Slater type orbital (STO)-based Amsterdam density functional (ADF) electronic structure code. We demonstrate the scalability of our algorithm on a series of water clusters with up to 432 atoms and 7776 basis functions and observe asymptotic quadratic scaling with realistic threshold qualities controlling distance effects and basis sets of triple-ζ (TZ) plus double polarization quality. Also owing to a very small prefactor, a G0W0 calculation for the largest of these clusters takes only 240 CPU hours with these settings. We assess the accuracy of our algorithm for HOMO and LUMO energies in the GW100 database. With errors of 0.24 eV for HOMO energies on the quadruple-ζ level, our implementation is less accurate than canonical all-electron implementations using the larger def2-QZVP GTO-type basis set. Apart from basis set errors, this is related to the well-known shortcomings of the GW space-time method using analytical continuation techniques as well as to numerical issues of the PADF approach of accurately representing diffuse atomic orbital (AO) products. We speculate that these difficulties might be overcome by using optimized auxiliary fit sets with more diffuse functions of higher angular momenta. Despite these shortcomings, for subsets of medium and large molecules from the GW5000 database, the error of our approach using basis sets of TZ and augmented double-ζ (DZ) quality is decreasing with system size. On the augmented DZ level, we reproduce canonical, complete basis set limit extrapolated reference values with an accuracy of 80 meV on average for a set of 20 large organic molecules. We anticipate our algorithm, in its current form, to be very useful in the study of single-particle properties of large organic systems such as chromophores and acceptor molecules.
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Affiliation(s)
- Arno Förster
- Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Lucas Visscher
- Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
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13
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Barone V, Ceselin G, Fusè M, Tasinato N. Accuracy Meets Interpretability for Computational Spectroscopy by Means of Hybrid and Double-Hybrid Functionals. Front Chem 2020; 8:584203. [PMID: 33195078 PMCID: PMC7645164 DOI: 10.3389/fchem.2020.584203] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Accepted: 08/17/2020] [Indexed: 11/13/2022] Open
Abstract
Accuracy and interpretability are often seen as the devil and holy grail in computational spectroscopy and their reconciliation remains a primary research goal. In the last few decades, density functional theory has revolutionized the situation, paving the way to reliable yet effective models for medium size molecules, which could also be profitably used by non-specialists. In this contribution we will compare the results of some widely used hybrid and double hybrid functionals with the aim of defining the most suitable recipe for all the spectroscopic parameters of interest in rotational and vibrational spectroscopy, going beyond the rigid rotor/harmonic oscillator model. We will show that last-generation hybrid and double hybrid functionals in conjunction with partially augmented double- and triple-zeta basis sets can offer, in the framework of second order vibrational perturbation theory, a general, robust, and user-friendly tool with unprecedented accuracy for medium-size semi-rigid molecules.
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Affiliation(s)
- Vincenzo Barone
- SMART Laboratory, Scuola Normale Superiore di Pisa, Pisa, Italy
| | - Giorgia Ceselin
- SMART Laboratory, Scuola Normale Superiore di Pisa, Pisa, Italy
| | - Marco Fusè
- SMART Laboratory, Scuola Normale Superiore di Pisa, Pisa, Italy
| | - Nicola Tasinato
- SMART Laboratory, Scuola Normale Superiore di Pisa, Pisa, Italy
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14
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Barsuk I, Lainé PP, Maurel F, Brémond É. Triangulenium dyes: the comprehensive photo-absorption and emission story of a versatile family of chromophores. Phys Chem Chem Phys 2020; 22:20673-20684. [PMID: 32895673 DOI: 10.1039/d0cp02990d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The triangulenium dyes constitute a family of versatile chromophores whose impressive photo-absorption and emission properties are currently highlighted in numerous novel experimental applications. In this investigation, we provide a comprehensive TDDFT characterization of their spectroscopic properties elucidating the origin of their large and complex absorption and emission vibronic spectra spread over the (whole) visible region. More precisely, by benchmarking the performance of 10 commonly-used exchange-correlation density functionals belonging to different classes of approximation, we develop and validate a computational protocol allowing the accurate modeling of both the position and optical line-shape of their vibrationally-resolved absorption and emission band structures. We find that semilocal approximations provide the best estimate of the structure of the vibronic spectra, however they spuriously and strongly underestimate their position. We finally show that global-hybrid density functionals mixing between 20 and 30% of exact-like exchange are an excellent compromise to get a satisfactory estimate of both of these properties.
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Affiliation(s)
- Irina Barsuk
- Université de Paris, ITODYS, CNRS, F-75006 Paris, France.
| | | | | | - Éric Brémond
- Université de Paris, ITODYS, CNRS, F-75006 Paris, France.
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15
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Blumentritt F, Latouche C, Morizet Y, Caldes MT, Jobic S, Fritsch E. Unravelling the Origin of the Yellow-Orange Luminescence in Natural and Synthetic Scapolites. J Phys Chem Lett 2020; 11:4591-4596. [PMID: 32412762 DOI: 10.1021/acs.jpclett.0c00712] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
After decades of speculation without material proof, the yellow-orange luminescence of scapolite is definitely assigned to (S2)- activators trapped in [Na4] square cages. Synthetic sulfur-doped scapolites confirm the implication of sulfur species in luminescence. Formally, the emission and excitation spectra of various polysulfide species were calculated. The excellent match between theory and experiments for (S2)- dimers provides definitive proof that it is the cause of the yellow-orange luminescence in scapolite.
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Affiliation(s)
- Féodor Blumentritt
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Camille Latouche
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Yann Morizet
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
- Université de Nantes, Nantes Atlantique Universités, Laboratoire de Planétologie et Géodynamique (LPG), UMR CNRS 6112, 2 rue de la Houssinière, 44322 Nantes Cedex, France
| | - Maria-Teresa Caldes
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Stéphane Jobic
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Emmanuel Fritsch
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
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16
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Thefioux Y, Cordier M, Massuyeau F, Latouche C, Martineau-Corcos C, Perruchas S. Polymorphic Copper Iodide Anions: Luminescence Thermochromism and Mechanochromism of (PPh4)2[Cu2I4]. Inorg Chem 2020; 59:5768-5780. [DOI: 10.1021/acs.inorgchem.0c00560] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Yaouen Thefioux
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Marie Cordier
- Université de Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Florian Massuyeau
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Camille Latouche
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
| | - Charlotte Martineau-Corcos
- MIM, Institut Lavoisier de Versailles (ILV), UMR CNRS 8180, Université de Versailles St-Quentin en Yvelines (UVSQ), 45, avenue des Etats-Unis, 78035 Versailles Cedex, France
- CNRS, CEMHTI UPR 3079, Université d’Orléans, F-45071 Orléans, France
| | - Sandrine Perruchas
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France
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17
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Boussessi R, Tasinato N, Pietropolli Charmet A, Stoppa P, Barone V. Sextic centrifugal distortion constants: interplay of density functional and basis set for accurate yet feasible computations. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1734678] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
| | | | | | - Paolo Stoppa
- Università Ca’ Foscari Venezia, Dipartimento di Scienze Molecolari e Nanosistemi, Mestre Venezia, Italy
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18
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Puzzarini C, Barone V. The challenging playground of astrochemistry: an integrated rotational spectroscopy - quantum chemistry strategy. Phys Chem Chem Phys 2020; 22:6507-6523. [PMID: 32163090 DOI: 10.1039/d0cp00561d] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
While it is now well demonstrated that the interstellar medium (ISM) is characterized by a diverse and complex chemistry, a significant number of features in radioastronomical spectra are still unassigned and call for new laboratory efforts, which are increasingly based on integrated experimental and computational strategies. In parallel, the identification of an increasing number of molecules containing more than five atoms and at least one carbon atom (the so-called "interstellar" complex organic molecules), which can play a relevant role in the chemistry of life, raises the additional issue of how these species can be produced in the typical harsh conditions of the ISM. On these grounds, this perspective aims to present an integrated rotational spectroscopy - quantum chemistry approach for supporting radioastronomical observations and a computational strategy for contributing to the elucidation of chemical reactivity in the interstellar space.
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Affiliation(s)
- Cristina Puzzarini
- Dipartimento di Chimica "Giacomo Ciamician", University of Bologna, via F. Selmi 2, I-40126 Bologna, Italy.
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy
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19
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Belaidi H, Rauch F, Zhang Z, Latouche C, Boucekkine A, Marder TB, Halet J. Insights into the Optical Properties of Triarylboranes with Strongly Electron‐Accepting Bis(fluoromesityl)boryl Groups: when Theory Meets Experiment. CHEMPHOTOCHEM 2019. [DOI: 10.1002/cptc.201900256] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Houmam Belaidi
- Univ Rennes, CNRSInstitut des Sciences Chimiques de Rennes UMR 6226 35000 Rennes France
| | - Florian Rauch
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Zuolun Zhang
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
- State Key Laboratory of Supramolecular Structure and Materials College of ChemistryJilin University Qianjin Street Changchun P. R. China
| | - Camille Latouche
- Institut des Matériaux Jean RouxelUniversité de Nantes, CNRS 2 rue de la Houssinière, BP 32229 44322 Nantes cedex 3 France
| | - Abdou Boucekkine
- Univ Rennes, CNRSInstitut des Sciences Chimiques de Rennes UMR 6226 35000 Rennes France
| | - Todd B. Marder
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Jean‐François Halet
- Univ Rennes, CNRSInstitut des Sciences Chimiques de Rennes UMR 6226 35000 Rennes France
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20
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Giovannini T, Riso RR, Ambrosetti M, Puglisi A, Cappelli C. Electronic transitions for a fully polarizable QM/MM approach based on fluctuating charges and fluctuating dipoles: Linear and corrected linear response regimes. J Chem Phys 2019; 151:174104. [PMID: 31703497 DOI: 10.1063/1.5121396] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
The fully polarizable Quantum Mechanics/Molecular Mechanics (QM/MM) approach based on fluctuating charges and fluctuating dipoles, named QM/FQFμ [T. Giovannini et al., J. Chem. Theory Comput. 15, 2233 (2019)], is extended to the calculation of vertical excitation energies of solvated molecular systems. Excitation energies are defined within two different solvation regimes, i.e., linear response (LR), where the response of the MM portion is adjusted to the QM transition density, and corrected-Linear Response (cLR) in which the MM response is adjusted to the relaxed QM density, thus being able to account for charge equilibration in the excited state. The model, which is specified in terms of three physical parameters (electronegativity, chemical hardness, and polarizability) is applied to vacuo-to-water solvatochromic shifts of aqueous solutions of para-nitroaniline, pyridine, and pyrimidine. The results show a good agreement with their experimental counterparts, thus highlighting the potentialities of this approach.
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Affiliation(s)
- Tommaso Giovannini
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | | | | | | | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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21
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Mendolicchio M, Baiardi A, Fronzoni G, Stener M, Grazioli C, de Simone M, Barone V. Theory meets experiment for unravelling the C1s X-ray photoelectron spectra of pyridine, 2-fluoropyridine, and 2,6-difluoropyridine. J Chem Phys 2019; 151:124105. [DOI: 10.1063/1.5122310] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
| | - Alberto Baiardi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56125 Pisa, Italy
- ETH Zürich, Laboratorium für Physikalische Chemie, Vladimir-Prelog-Weg 2, 8093 Zürich, Switzerland
| | - Giovanna Fronzoni
- Dipartimento di Scienze Chimiche e Farmaceutiche, Universita’ di Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Mauro Stener
- Dipartimento di Scienze Chimiche e Farmaceutiche, Universita’ di Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Cesare Grazioli
- IOM- CNR Laboratorio TASC, Basovizza SS-14, km 163.5, 34149 Trieste, Italy
| | - Monica de Simone
- IOM- CNR Laboratorio TASC, Basovizza SS-14, km 163.5, 34149 Trieste, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56125 Pisa, Italy
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22
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Puzzarini C, Bloino J, Tasinato N, Barone V. Accuracy and Interpretability: The Devil and the Holy Grail. New Routes across Old Boundaries in Computational Spectroscopy. Chem Rev 2019; 119:8131-8191. [DOI: 10.1021/acs.chemrev.9b00007] [Citation(s) in RCA: 114] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Cristina Puzzarini
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, I-40126 Bologna, Italy
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Nicola Tasinato
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
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23
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Beć KB, Karczmit D, Kwaśniewicz M, Ozaki Y, Czarnecki MA. Overtones of νC≡N Vibration as a Probe of Structure of Liquid CH3CN, CD3CN, and CCl3CN: Combined Infrared, Near-Infrared, and Raman Spectroscopic Studies with Anharmonic Density Functional Theory Calculations. J Phys Chem A 2019; 123:4431-4442. [DOI: 10.1021/acs.jpca.9b02170] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Krzysztof Bernard Beć
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Daniel Karczmit
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Michał Kwaśniewicz
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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24
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Stoliaroff A, Rio J, Latouche C. Accurate computations to simulate the phosphorescence spectra of large transition complexes: simulated colors match experiment. NEW J CHEM 2019. [DOI: 10.1039/c9nj02388g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein, an ab initio investigation on the luminescence properties of three iridium(iii) complexes is reported.
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Affiliation(s)
- Adrien Stoliaroff
- Institut des Materiaux Jean Rouxel (IMN)
- Université de Nantes
- CNRS
- 44322 Nantes cedex 3
- France
| | - Jérémy Rio
- Institut des Materiaux Jean Rouxel (IMN)
- Université de Nantes
- CNRS
- 44322 Nantes cedex 3
- France
| | - Camille Latouche
- Institut des Materiaux Jean Rouxel (IMN)
- Université de Nantes
- CNRS
- 44322 Nantes cedex 3
- France
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25
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Saielli G. Computational Spectroscopy of Ionic Liquids for Bulk Structure Elucidation. ADVANCED THEORY AND SIMULATIONS 2018. [DOI: 10.1002/adts.201800084] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Giacomo Saielli
- CNR Institute on Membrane Technology; Unit of Padova; Via Marzolo 1-35131 Padova Italy
- Department of Chemical Sciences; University of Padova; Via Marzolo 1-35131 Padova Italy
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26
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Infrared spectra and other properties predictions of 5-amino-3-methyl-4-isoxazolecarbohydrazide with electric field simulation using CPC model. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.01.085] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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27
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Marciniak H, Hristova S, Deneva V, Kamounah FS, Hansen PE, Lochbrunner S, Antonov L. Dynamics of excited state proton transfer in nitro substituted 10-hydroxybenzo[h]quinolines. Phys Chem Chem Phys 2018; 19:26621-26629. [PMID: 28953273 DOI: 10.1039/c7cp04476c] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The ground state tautomerism and excited state intramolecular proton transfer (ESIPT) of 10-hydroxybenzo[h]quinoline (HBQ) and its nitro derivatives, 7-nitrobenzo[h]quinolin-10-ol (2) and 7,9-dinitrobenzo[h]quinolin-10-ol (3), have been studied in acetonitrile using steady state as well as time dependent spectroscopy and quantum-chemical calculations. In addition to the enol form absorbance in the range 360-390 nm, the absorption spectra of 2 and 3 exhibit a red shifted band at ∼450 nm. Chemometric data processing, based on individual band decomposition, allowed us to estimate the position of the ground state enol-keto tautomeric equilibrium (ΔG values of 1.03 and 0.62 kcal mol-1 respectively for 2 and 3). The fluorescence stems from the keto form even if the enol form is optically excited as proven by the shape of the excitation spectra indicating that ESIPT takes place. The Stokes shift of the substituted compounds is substantially lower compared to HBQ, which follows from the fact that the substitution occurs in the formal cyclohexa-2,4-dienone moiety and leads to a decrease of the HOMO level of the keto tautomer. The pump-probe experiments show that in the nitro substituted HBQs 2 and 3 ESIPT occurs with a time constant of 0.89 ps and 0.68 ps, respectively. In both cases a mixture of the enol and proton transfer forms is optically excited. The enol form exhibits then the ESIPT and subsequently both fractions take the same relaxation path. We propose that in 2 and 3 the ESIPT path exhibits a potential energy barrier resulting in an incoherent rate governed process while in HBQ the ESIPT proceeds as a ballistic wavepacket motion along a path without significant barriers. The theoretical calculations (M06-2X/TZVP) confirm the existence of a barrier in the ground and excited states as result of the substitution.
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Affiliation(s)
- H Marciniak
- Institut für Physik, Universität Rostock, Albert-Einstein-Straße 23-24, 18059 Rostock, Germany
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28
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Licari D, Fusè M, Salvadori A, Tasinato N, Mendolicchio M, Mancini G, Barone V. Towards the SMART workflow system for computational spectroscopy. Phys Chem Chem Phys 2018; 20:26034-26052. [DOI: 10.1039/c8cp03417f] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Is it possible to convert highly specialized research in the field of computational spectroscopy into robust and user-friendly aids to experiments and industrial applications?
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Affiliation(s)
- Daniele Licari
- Scuola Normale Superiore
- 56126 Pisa
- Italy
- Istituto Italiano di Tecnologia
- 16163 Genova
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29
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Latouche C, Liao JH, Li YJ, Shiu RY, Barone V, Kahlal S, Liu CW, Saillard JY. Encapsulating Iodine and Copper into Copper(I) Clusters Stabilized by Dichalcogenolate Ligands: Stability, Structure, and Optical Properties. Inorg Chem 2017; 56:14135-14146. [DOI: 10.1021/acs.inorgchem.7b02269] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Camille Latouche
- Institut des Matériaux
Jean Rouxel, Université de Nantes, CNRS, 2 rue de la Houssinière,
BP 32229, 44322 Nantes cedex 3, France
| | - Jian-Hong Liao
- Department of Chemistry, National Dong Hwa University, No. 1, Sec. 2, Da Hsueh Road, Shoufeng, Hualien 97401, Taiwan, Republic of China
| | - Yi-Juan Li
- Department of Chemistry, National Dong Hwa University, No. 1, Sec. 2, Da Hsueh Road, Shoufeng, Hualien 97401, Taiwan, Republic of China
| | - Ruei-Yi Shiu
- Department of Chemistry, National Dong Hwa University, No. 1, Sec. 2, Da Hsueh Road, Shoufeng, Hualien 97401, Taiwan, Republic of China
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Samia Kahlal
- Institut des Sciences Chimiques de Rennes, UMR CNRS 6226, Campus
de Beaulieu, 263 av. Général Leclerc, 35042 Rennes, France
| | - C. W. Liu
- Department of Chemistry, National Dong Hwa University, No. 1, Sec. 2, Da Hsueh Road, Shoufeng, Hualien 97401, Taiwan, Republic of China
| | - Jean-Yves Saillard
- Institut des Sciences Chimiques de Rennes, UMR CNRS 6226, Campus
de Beaulieu, 263 av. Général Leclerc, 35042 Rennes, France
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30
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Ayache H, Hammoutène D, Fritsch E, Elkechai A, Boucekkine A, Latouche C. Comprehensive approach to simulate vibrationally resolved phosphorescence spectra of gold(III) complexes using DFT including temperature effects. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2135-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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31
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Galimberti DR, Milani A, Gaigeot MP, Radice S, Tonelli C, Picozzi R, Castiglioni C. Static vs dynamic DFT prediction of IR spectra of flexible molecules in the condensed phase: The (ClCF 2CF(CF 3)OCF 2CH 3) liquid as a test case. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 183:195-203. [PMID: 28448957 DOI: 10.1016/j.saa.2017.04.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Revised: 04/07/2017] [Accepted: 04/14/2017] [Indexed: 06/07/2023]
Abstract
First-principles molecular dynamics (FPMD) simulations in the framework of Density Functional Theory (DFT) are carried out for the prediction of the infrared spectrum of the fluorinated molecule ClCF2CF(CF3)OCF2CH3 in liquid and gas phase. This molecule is characterized by a flexible structure, allowing the co-existence of several stable conformers, that differ by values of the torsional angles. FPMD computed spectra are compared to the experimental ones, and to Boltzmann weighted IR spectra based on gas phase calculations.
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Affiliation(s)
- Daria Ruth Galimberti
- Politecnico di Milano - Dip. Chimica, Materiali, Ing. Chimica "G. Natta", Piazza Leonardo da Vinci 32, 20133 Milan, Italy.
| | - Alberto Milani
- Politecnico di Milano - Dip. Chimica, Materiali, Ing. Chimica "G. Natta", Piazza Leonardo da Vinci 32, 20133 Milan, Italy
| | - Marie-Pierre Gaigeot
- LAMBE CNRS UMR8587, Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement, Université d'Evry val d'Essonne, Boulevard F. Mitterrand, Bat Maupertuis, 91025 Evry, France
| | - Stefano Radice
- Solvay Specialty Polymers RD&T Center, Viale Lombardia 20, 20021 Bollate, MI, Italy
| | - Claudio Tonelli
- Solvay Specialty Polymers RD&T Center, Viale Lombardia 20, 20021 Bollate, MI, Italy
| | - Rosaldo Picozzi
- Solvay Specialty Polymers RD&T Center, Viale Lombardia 20, 20021 Bollate, MI, Italy
| | - Chiara Castiglioni
- Politecnico di Milano - Dip. Chimica, Materiali, Ing. Chimica "G. Natta", Piazza Leonardo da Vinci 32, 20133 Milan, Italy
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Srebro-Hooper M, Autschbach J. Calculating Natural Optical Activity of Molecules from First Principles. Annu Rev Phys Chem 2017; 68:399-420. [DOI: 10.1146/annurev-physchem-052516-044827] [Citation(s) in RCA: 94] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260
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33
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Presti D, Pedone A, Licari D, Barone V. A Modular Implementation for the Simulation of 1D and 2D Solid-State NMR Spectra of Quadrupolar Nuclei in the Virtual Multifrequency Spectrometer-Draw Graphical Interface. J Chem Theory Comput 2017; 13:2215-2229. [PMID: 28402672 DOI: 10.1021/acs.jctc.7b00154] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present the implementation of the solid state (SoS)NMR module for the simulation of several 1D and 2D NMR spectra of all the elements in the periodic table in the virtual multifrequency spectrometer (VMS). This module is fully integrated with the graphical user interface of VMS (VMS-Draw) [Licari et al., J. Comput. Chem. 36, 2015, 321-334], a freeware tool which allows a user-friendly handling of structures and analyses of advanced spectroscopical properties of chemical compounds-from model systems to real-world applications. Besides the numerous modules already available in VMS for the study of electronic, optical, vibrational, vibronic, and EPR properties, here the simulation of NMR spectra is presented with a particular emphasis on those techniques usually employed to investigate solid state systems. The SoSNMR module benefits from its ability to work under both periodic and nonperiodic conditions, such that small molecules/molecular clusters can be treated, as well as extended three-dimensional systems enforcing (or not) translational periodicity. These features allow VMS to simulate spectra resulting from NMR calculations by some popular quantum chemistry codes, namely Gaussian09/16, Castep, and Quantum Espresso. The effectiveness of the SoSNMR module of VMS is examined throughout the manuscript, and applied to simulate 1D static, MAS, and VAS NMR spectra as well as 2D correlation (90°, MAS) and MQMAS spectra of active NMR nuclei embedded in different amorphous and crystalline systems of actual interest in chemistry and material science. Finally, the program is able to simulate the spectra of both the total ensemble of spin-active nuclei present in the system and of subensembles differentiated depending on the chemical environment of the first and second coordination sphere in a very general way applicable to any kind of systems.
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Affiliation(s)
- Davide Presti
- Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio-Emilia , 103 via G. Campi, I-41125 Modena, Italy
| | - Alfonso Pedone
- Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio-Emilia , 103 via G. Campi, I-41125 Modena, Italy
| | - Daniele Licari
- Scuola Normale Superiore di Pisa , Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore di Pisa , Piazza dei Cavalieri 7, I-56126 Pisa, Italy
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34
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Massuyeau F, Faulques E, Latouche C. New Insights To Simulate the Luminescence Properties of Pt(II) Complexes Using Quantum Calculations. J Chem Theory Comput 2017; 13:1748-1755. [DOI: 10.1021/acs.jctc.7b00103] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Florian Massuyeau
- Institut des Matériaux
Jean Rouxel (IMN), Université de Nantes, CNRS, 2 rue de
la Houssiniere, BP 32229, 44322 Nantes cedex 3, France
| | - Eric Faulques
- Institut des Matériaux
Jean Rouxel (IMN), Université de Nantes, CNRS, 2 rue de
la Houssiniere, BP 32229, 44322 Nantes cedex 3, France
| | - Camille Latouche
- Institut des Matériaux
Jean Rouxel (IMN), Université de Nantes, CNRS, 2 rue de
la Houssiniere, BP 32229, 44322 Nantes cedex 3, France
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35
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Pagliai M, Mancini G, Carnimeo I, De Mitri N, Barone V. Electronic absorption spectra of pyridine and nicotine in aqueous solution with a combined molecular dynamics and polarizable QM/MM approach. J Comput Chem 2017; 38:319-335. [PMID: 27910109 PMCID: PMC6680224 DOI: 10.1002/jcc.24683] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Revised: 11/04/2016] [Accepted: 11/08/2016] [Indexed: 01/06/2023]
Abstract
The electronic absorption spectra of pyridine and nicotine in aqueous solution have been computed using a multistep approach. The computational protocol consists in studying the solute solvation with accurate molecular dynamics simulations, characterizing the hydrogen bond interactions, and calculating electronic transitions for a series of configurations extracted from the molecular dynamics trajectories with a polarizable QM/MM scheme based on the fluctuating charge model. Molecular dynamics simulations and electronic transition calculations have been performed on both pyridine and nicotine. Furthermore, the contributions of solute vibrational effect on electronic absorption spectra have been taken into account in the so called vertical gradient approximation. © 2016 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc.
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Affiliation(s)
- Marco Pagliai
- Scuola Normale SuperiorePiazza dei Cavalieri 7PisaI‐56126Italy
| | | | - Ivan Carnimeo
- Scuola Normale SuperiorePiazza dei Cavalieri 7PisaI‐56126Italy
- Compunet, Istituto Italiano di Tecnologia (IIT)via Morego 30GenovaI‐16163Italy
| | - Nicola De Mitri
- Scuola Normale SuperiorePiazza dei Cavalieri 7PisaI‐56126Italy
- Present address:
Department of ChemistryUniversity of CambridgeLensfield RoadCambridgeCB2 1EWU.K.
| | - Vincenzo Barone
- Scuola Normale SuperiorePiazza dei Cavalieri 7PisaI‐56126Italy
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36
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Vibronic coupling to simulate the phosphorescence spectra of Ir(III)-based OLED systems: TD-DFT results meet experimental data. J Mol Model 2016; 22:265. [DOI: 10.1007/s00894-016-3132-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 09/26/2016] [Indexed: 10/20/2022]
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37
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Grimme S, Bannwarth C. Ultra-fast computation of electronic spectra for large systems by tight-binding based simplified Tamm-Dancoff approximation (sTDA-xTB). J Chem Phys 2016; 145:054103. [DOI: 10.1063/1.4959605] [Citation(s) in RCA: 90] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Affiliation(s)
- Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
| | - Christoph Bannwarth
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
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38
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Baiardi A, Bloino J, Barone V. General formulation of vibronic spectroscopy in internal coordinates. J Chem Phys 2016; 144:084114. [PMID: 26931688 DOI: 10.1063/1.4942165] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Our general platform integrating time-independent and time-dependent evaluations of vibronic effects at the harmonic level for different kinds of absorption and emission one-photon, conventional and chiral spectroscopies has been extended to support various sets of internal coordinates. Thanks to the implementation of analytical first and second derivatives of different internal coordinates with respect to cartesian ones, both vertical and adiabatic models are available, with the inclusion of mode mixing and, possibly, Herzberg-Teller contributions. Furthermore, all supported non-redundant sets of coordinates are built from a fully automatized algorithm using only a primitive redundant set derived from a bond order-based molecular topology. Together with conventional stretching, bending, and torsion coordinates, the availability of additional coordinates (including linear and out-of-plane bendings) allows a proper treatment of specific systems, including, for instance, inter-molecular hydrogen bridges. A number of case studies are analysed, showing that cartesian and internal coordinates are nearly equivalent for semi-rigid systems not experiencing significant geometry distortions between initial and final electronic states. At variance, delocalized (possibly weighted) internal coordinates become much more effective than their cartesian counterparts for flexible systems and/or in the presence of significant geometry distortions accompanying electronic transitions.
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Affiliation(s)
- Alberto Baiardi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Julien Bloino
- Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
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Hodecker M, Biczysko M, Dreuw A, Barone V. Simulation of Vacuum UV Absorption and Electronic Circular Dichroism Spectra of Methyl Oxirane: The Role of Vibrational Effects. J Chem Theory Comput 2016; 12:2820-33. [PMID: 27159495 PMCID: PMC5612404 DOI: 10.1021/acs.jctc.6b00121] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Vibrationally resolved one-photon absorption and electronic circular dichroism spectra of (R)-methyl oxirane were calculated with different electronic and vibronic models selecting, through an analysis of the convergence of the results, the best compromise between reliability and computational cost. Linear-response TD-DFT/CAM-B3LYP/SNST electronic computations in conjunction with the simple vertical gradient vibronic model were chosen and employed for systematic comparison with the available experimental data. Remarkable agreement between simulated and experimental spectra was achieved for both one-photon absorption and circular dichroism concerning peak positions, relative intensities, and general spectral shapes considering the computational efficiency of the chosen theoretical approach. The significant improvement of the results with respect to smearing of vertical electronic transitions by phenomenological Gaussian functions and the possible inclusion of solvent effects by polarizable continuum models at a negligible additional cost paves the route toward the simulation and analysis of spectral shapes of complex molecular systems in their natural environment.
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Affiliation(s)
- Manuel Hodecker
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Im Neuenheimer Feld 368, 69120 Heidelberg, Germany
| | - Malgorzata Biczysko
- International Centre for Quantum and Molecular Structures, College of Sciences, Shanghai University, 99 Shangda Road, Shanghai, 200444 China
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Im Neuenheimer Feld 368, 69120 Heidelberg, Germany
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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Santoro F, Jacquemin D. Going beyond the vertical approximation with time-dependent density functional theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1260] [Citation(s) in RCA: 121] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Fabrizio Santoro
- CNR-Consiglio Nazionale delle Ricerche; Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR); Pisa Italy
| | - Denis Jacquemin
- CEISAM, UMR CNRS 6230; Université de Nantes; Nantes France
- Institut Universitaire de France; Paris France
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Fornaro T, Biczysko M, Bloino J, Barone V. Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases. Phys Chem Chem Phys 2016; 18:8479-90. [PMID: 26940362 PMCID: PMC5612391 DOI: 10.1039/c5cp07386c] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The accurate prediction of vibrational wavenumbers for functional groups involved in hydrogen-bonded bridges remains an important challenge for computational spectroscopy. For the specific case of the C=O and N-H stretching modes of nucleobases and their oligomers, the paucity of experimental reference values needs to be compensated by reliable computational data, which require the use of approaches going beyond the standard harmonic oscillator model. Test computations performed for model systems (formamide, acetamide and their cyclic homodimers) in the framework of the second order vibrational perturbation theory (VPT2) confirmed that anharmonic corrections can be safely computed by global hybrid (GHF) or double hybrid (DHF) functionals, whereas the harmonic part is particularly challenging. As a matter of fact, GHFs perform quite poorly and even DHFs, while fully satisfactory for C=O stretchings, face unexpected difficulties when dealing with N-H stretchings. On these grounds, a linear regression for N-H stretchings has been obtained and validated for the heterodimers formed by 4-aminopyrimidine with 6-methyl-4-pyrimidinone (4APM-M4PMN) and by uracil with water. In view of the good performance of this computational model, we have built a training set of B2PLYP-D3/maug-cc-pVTZ harmonic wavenumbers (including linear regression scaling for N-H) for six-different uracil dimers and a validation set including 4APM-M4PMN, one of the most stable hydrogen-bonded adenine homodimers, as well as the adenine-uracil, adenine-thymine, guanine-cytosine and adenine-4-thiouracil heterodimers. Because of the unfavourable scaling of DHF harmonic wavenumbers with the dimensions of the investigated systems, we have optimized a linear regression of B3LYP-D3/N07D harmonic wavenumbers for the training set, which has been next checked against the validation set. This relatively cheap model, which shows very good agreement with experimental data (average errors of about 10 cm(-1)), paves the route toward a reliable analysis of spectroscopic signatures for larger polynucleotides.
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Affiliation(s)
- Teresa Fornaro
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy.
| | - Malgorzata Biczysko
- International Centre for Quantum and Molecular Structures, College of Sciences, Shanghai University, 99 Shangda Road, Shanghai, 200444, China.
| | - Julien Bloino
- Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy.
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Barone V. The Virtual Multifrequency Spectrometer: a new paradigm for spectroscopy. WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE 2016; 6:86-110. [PMID: 29075335 PMCID: PMC5654514 DOI: 10.1002/wcms.1238] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
On going developments of hardware and software are changing computational spectroscopy from a strongly specialized research area to a general tool in the inventory of most researchers. Increased interactions between experimentally-oriented users and theoretically-oriented developers of new methods and models would result in more robust, flexible and reliable tools and studies for the systems of increasing complexity, which are of current scientific and technological interest. This is the philosophy behind this review, which presents the development of a so-called virtual multi-frequency spectrometer (VMS) including state-of-the-art approaches in a user-friendly frame. The current status of the VMS tool will be illustrated by a number of case studies with special reference to infrared and UV-vis regions of the electro-magnetic spectrum including also chiral spectroscopies. Only the basic theoretical background will be provided avoiding explicit equations as far as possible, and pointing out the most recent advancements beyond the standard rigid-rotor harmonic-oscillator model coupled to vertical electronic excitation energies.
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Affiliation(s)
- Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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A computational approach to the resonance Raman spectrum of doxorubicin in aqueous solution. Theor Chem Acc 2016. [DOI: 10.1007/s00214-015-1781-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Beć KB, Futami Y, Wójcik MJ, Ozaki Y. A spectroscopic and theoretical study in the near-infrared region of low concentration aliphatic alcohols. Phys Chem Chem Phys 2016; 18:13666-82. [DOI: 10.1039/c6cp00924g] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The near-infrared (NIR) spectra of low-concentration (5 × 10−3 M) solutions in CCl4 of basic aliphatic alcohols, methanol, ethanol, and 1-propanol were, for the first time, calculated by second-order vibrational perturbation theory computations and were compared with the corresponding experimental data.
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Affiliation(s)
- Krzysztof B. Beć
- Department of Chemistry
- School of Science and Technology
- Kwansei Gakuin University
- Sanda
- Japan
| | - Yoshisuke Futami
- Department of Biological and Chemical Systems Engineering
- National Institute of Technology
- Kumamoto College
- Yatsushiro
- Japan
| | - Marek J. Wójcik
- Faculty of Chemistry
- Jagiellonian University
- Ingardena 3
- Poland
| | - Yukihiro Ozaki
- Department of Chemistry
- School of Science and Technology
- Kwansei Gakuin University
- Sanda
- Japan
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Massuyeau F, Faulques E, Latouche C, Barone V. New insights into the vibrational and optical signatures of trans-stilbene via integrated experimental and quantum mechanical approaches. Phys Chem Chem Phys 2016; 18:19378-85. [DOI: 10.1039/c6cp02787c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structure, spectroscopic parameters and optical properties of stilbene have been investigated by a computational protocol including suitable treatment of anharmonic contributions together with new experimental results.
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Affiliation(s)
- Florian Massuyeau
- Institut des Matériaux Jean Rouxel (IMN)
- Université de Nantes
- CNRS
- 44322 Nantes cedex 3
- France
| | - Eric Faulques
- Institut des Matériaux Jean Rouxel (IMN)
- Université de Nantes
- CNRS
- 44322 Nantes cedex 3
- France
| | - Camille Latouche
- Institut des Matériaux Jean Rouxel (IMN)
- Université de Nantes
- CNRS
- 44322 Nantes cedex 3
- France
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Latouche C, Barone V. Computational Chemistry Meets Experiments for Explaining the Behavior of Bibenzyl: A Thermochemical and Spectroscopic (Infrared, Raman, and NMR) Investigation. J Chem Theory Comput 2015; 10:5586-92. [PMID: 26583241 DOI: 10.1021/ct500930b] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The structure, conformational behavior, and spectroscopic parameters of bibenzyl have been investigated by a computational protocol including proper treatment of anharmonic and hindered rotor contributions. Conventional hybrid functionals overstabilize the anti conformer while low-order post-Hartree-Fock (MP2) approaches strongly favor the gauche conformer. However, inclusion of semiempirical dispersion effects in density functionals or coupled cluster post-Hartree-Fock models agree in forecasting the simultaneous presence of both conformers in the gas phase with a slightly larger stability (0.7 kcal·mol(-1)) of the gauche conformer. Addition of thermal and entropic effects finally leads to very close Gibbs free energies for both conformers and, thus, to a slight preference for the gauche form due to statistical factors (2 vs 1). The situation remains essentially the same in solution. On these grounds, perturbative vibrational computations including both electrical and mechanical anharmonicities lead to IR and Raman spectra in remarkable agreement with experiment. Full assignment of the IR spectra explains the presence of peaks from gauche or anti conformers. Comparison between computed and experimental Raman spectra confirms that both conformers are present in liquid phase, whereas the anti conformer seems to be preponderant in the solid state. Also computed NMR parameters are in good agreement with experiment.
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Affiliation(s)
- Camille Latouche
- Chemistry, Faculty of Science, Scuola normale Superiore di Pisa , Piazza dei Cavalieri 7, 56126 Pisa PI, Italy
| | - Vincenzo Barone
- Chemistry, Faculty of Science, Scuola normale Superiore di Pisa , Piazza dei Cavalieri 7, 56126 Pisa PI, Italy
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Bloino J, Biczysko M, Barone V. Anharmonic Effects on Vibrational Spectra Intensities: Infrared, Raman, Vibrational Circular Dichroism, and Raman Optical Activity. J Phys Chem A 2015; 119:11862-74. [PMID: 26580121 PMCID: PMC5612400 DOI: 10.1021/acs.jpca.5b10067] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The aim of this paper is 2-fold. First, we want to report the extension of our virtual multifrequency spectrometer (VMS) to anharmonic intensities for Raman optical activity (ROA) with the full inclusion of first- and second-order resonances for both frequencies and intensities in the framework of the generalized second-order vibrational perturbation theory (GVPT2) for all kinds of vibrational spectroscopies. Then, from a more general point of view, we want to present and validate the performance of VMS for the parallel analysis of different vibrational spectra for medium-sized molecules (IR, Raman, VCD, ROA) including both mechanical and electric/magnetic anharmonicity. For the well-known methyloxirane benchmark, careful selection of density functional, basis set, and resonance thresholds permitted us to reach qualitative and quantitative agreement between experimental and computed band positions and shapes. Next, the whole series of halogenated azetidinones is analyzed, showing that it is now possible to interpret different spectra in terms of mass, electronegativity, polarizability, and hindrance variation between closely related substituents, chiral spectroscopies being particular effective in this connection.
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Affiliation(s)
- Julien Bloino
- Consiglio Nazionale delle Ricerche, Istituto di Chimica dei
Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G.
Moruzzi 1, I-56124 Pisa, Italy
| | - Malgorzata Biczysko
- Consiglio Nazionale delle Ricerche, Istituto di Chimica dei
Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G.
Moruzzi 1, I-56124 Pisa, Italy
- International Center of Quantum and Molecular Structures,
College of Sciences, Shanghai University, 99 Shangda Road, Shanghai, 200444
China
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa,
Italy
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Carnimeo I, Cappelli C, Barone V. Analytical gradients for MP2, double hybrid functionals, and TD-DFT with polarizable embedding described by fluctuating charges. J Comput Chem 2015; 36:2271-90. [PMID: 26399473 PMCID: PMC5054946 DOI: 10.1002/jcc.24195] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Revised: 07/31/2015] [Accepted: 08/07/2015] [Indexed: 01/09/2023]
Abstract
A polarizable quantum mechanics (QM)/ molecular mechanics (MM) approach recently developed for Hartree-Fock (HF) and Kohn-Sham (KS) methods has been extended to energies and analytical gradients for MP2, double hybrid functionals, and TD-DFT models, thus allowing the computation of equilibrium structures for excited electronic states together with more accurate results for ground electronic states. After a detailed presentation of the theoretical background and of some implementation details, a number of test cases are analyzed to show that the polarizable embedding model based on fluctuating charges (FQ) is remarkably more accurate than the corresponding electronic embedding based on a fixed charge (FX) description. In particular, a set of electronegativities and hardnesses has been optimized for interactions between QM and FQ regions together with new repulsion-dispersion parameters. After validation of both the numerical implementation and of the new parameters, absorption electronic spectra have been computed for representative model systems including vibronic effects. The results show remarkable agreement with full QM computations and significant improvement with respect to the corresponding FX results. The last part of the article provides some hints about computation of solvatochromic effects on absorption spectra in aqueous solution as a function of the number of FQ water molecules and on the use of FX external shells to improve the convergence of the results. © 2015 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc.
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Affiliation(s)
- Ivan Carnimeo
- Istituto Italiano Di Tecnologia (IIT), Compunet, via Morego, 30 I-16163 Genova, Italy and Scuola Normale Superiore, Piazza Dei Cavalieri, 7 I-56126, Pisa, Italy
| | - Chiara Cappelli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via Moruzzi, 13, I-56124, Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri, 7 I-56126, Pisa, Italy
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Barone V, Biczysko M, Latouche C, Pasti A. Virtual eyes for technology and cultural heritage: toward computational strategy for new and old indigo-based dyes. Theor Chem Acc 2015; 134:145. [PMID: 30519143 PMCID: PMC6276990 DOI: 10.1007/s00214-015-1753-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
A cost-effective, robust, and reliable computational strategy is applied to simulate peak positions and band-shapes of UV-vis spectra together with the dye colours perceived by human eyes. The features of our virtual multifrequency spectrometer (VMS) relevant to this topic are sketched with special focus on the selection of density functional, vibronic model, and solvent description. Furthermore, the new VMS-Draw graphical user interface (GUI) is employed for user-friendly pre- and post-processing of the computed data. The family of indigo dyes is used as case study in view of their continued use in the field of cultural heritage, together with new promising applications for photonics and sustainable energy. After assessment of different simplified models employed in previous studies, the role of several substituents and of dimerization in tuning the colour and spectral features are analyzed in detail by means of both accurate computations and interpretative models. The results are in remarkable agreement with experiment and allow to rationalize the behaviour of this class of dyes.
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Affiliation(s)
- Vincenzo Barone
- Scuola Normale Superiore di Pisa Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Malgorzata Biczysko
- Physics Department, and International Centre for Quantum and Molecular Structures, Shanghai University, 99 Shangda Road, Shanghai, 200444 China
| | - Camille Latouche
- Scuola Normale Superiore di Pisa Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Andrea Pasti
- Scuola Normale Superiore di Pisa Piazza dei Cavalieri 7, I-56126 Pisa, Italy
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Baiardi A, Mendolicchio M, Barone V, Fronzoni G, Cardenas Jimenez GA, Stener M, Grazioli C, de Simone M, Coreno M. Vibrationally resolved NEXAFS at C and N K-edges of pyridine, 2-fluoropyridine and 2,6-difluoropyridine: A combined experimental and theoretical assessment. J Chem Phys 2015; 143:204102. [DOI: 10.1063/1.4935715] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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