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Taurine Stabilizing Effect on Lysozyme. Life (Basel) 2022; 12:life12010133. [PMID: 35054526 PMCID: PMC8779517 DOI: 10.3390/life12010133] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/11/2022] [Accepted: 01/11/2022] [Indexed: 01/05/2023] Open
Abstract
Taurine is an important organic osmolyte in mammalian cells, and it weakens inflammation and oxidative stress mediated injuries in some diseases. Recently, taurine has been demonstrated to play a therapeutic role against neurodegenerative disorders, although its parallel involvement in several biochemical mechanisms makes not clear taurine specific role in these diseases. Furthermore, the stabilizing effect of this molecule in terms of protein stability is known, but not deeply investigated. In this work we explore by Circular Dichroism the stabilizing impact of taurine in lysozyme thermal denaturation and its influence in lysozyme aggregation into amyloid fibrils. Taurine even at low concentration modifies protein-protein interactions in lysozyme native state, as revealed by Small Angle X-ray Scattering experiments, and alters the amyloid aggregation pattern without completely inhibiting it, as confirmed by UV/Vis spectroscopy with Congo Red and by Atomic Force Microscopy. Evaluation of the cytotoxicities of the amyloid fibrils grown in presence or in absence of taurine is investigated on SH-SY5Y neuroblastoma cells.
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Julius K, Weine J, Berghaus M, König N, Gao M, Latarius J, Paulus M, Schroer MA, Tolan M, Winter R. Water-Mediated Protein-Protein Interactions at High Pressures are Controlled by a Deep-Sea Osmolyte. PHYSICAL REVIEW LETTERS 2018; 121:038101. [PMID: 30085800 DOI: 10.1103/physrevlett.121.038101] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Indexed: 06/08/2023]
Abstract
The influence of natural cosolvent mixtures on the pressure-dependent structure and protein-protein interaction potential of dense protein solutions is studied and analyzed using small-angle X-ray scattering in combination with a liquid-state theoretical approach. The deep-sea osmolyte trimethylamine-N-oxide is shown to play a crucial and singular role in its ability to not only guarantee sustainability of the native protein's folded state under harsh environmental conditions, but it also controls water-mediated intermolecular interactions at high pressure, thereby preventing contact formation and hence aggregation of proteins.
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Affiliation(s)
- Karin Julius
- Faculty of Physics/DELTA, TU Dortmund University, 44221 Dortmund, Germany
| | - Jonathan Weine
- Faculty of Physics/DELTA, TU Dortmund University, 44221 Dortmund, Germany
| | - Melanie Berghaus
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany
| | - Nico König
- Faculty of Physics/DELTA, TU Dortmund University, 44221 Dortmund, Germany
| | - Mimi Gao
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany
| | - Jan Latarius
- Faculty of Physics/DELTA, TU Dortmund University, 44221 Dortmund, Germany
| | - Michael Paulus
- Faculty of Physics/DELTA, TU Dortmund University, 44221 Dortmund, Germany
| | - Martin A Schroer
- European Molecular Biology Laboratory (EMBL) Hamburg c/o DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Metin Tolan
- Faculty of Physics/DELTA, TU Dortmund University, 44221 Dortmund, Germany
| | - Roland Winter
- Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany
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Abstract
Abstract
Effects of interfaces on hydrogen-bonded liquids play major roles in nature and technology. Despite their importance, a fundamental understanding of these effects is still lacking. In large parts, this shortcoming is due to the high complexity of these systems, leading to an interference of various interactions and effects. Therefore, it is advisable to take gradual approaches, which start from well designed and defined model systems and systematically increase the level of intricacy towards more complex mimetics. Moreover, it is necessary to combine insights from a multitude of methods, in particular, to link novel preparation strategies and comprehensive experimental characterization with inventive computational and theoretical modeling. Such concerted approach was taken by a group of preparative, experimentally, and theoretically working scientists in the framework of Research Unit FOR 1583 funded by the Deutsche Forschungsgemeinschaft (German Research Foundation). This special issue summarizes the outcome of this collaborative research. In this introductory article, we give an overview of the covered topics and the main results of the whole consortium. The following contributions are review articles or original works of individual research projects.
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Affiliation(s)
- Gerd Buntkowsky
- Institut für Physikalische Chemie , Technische Universität Darmstadt , 64287 Darmstadt , Germany
| | - Michael Vogel
- Institut für Festkörperphysik , Technische Universität Darmstadt , 64295 Darmstadt , Germany
| | - Roland Winter
- Fakultät für Chemie und Chemische Biologie , Technische Universität Dortmund , 44227 Dortmund , Germany
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Kats EI, Muratov AR. Simple analysis of scattering data with the Ornstein-Zernike equation. Phys Rev E 2018; 97:012610. [PMID: 29448359 DOI: 10.1103/physreve.97.012610] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Indexed: 11/07/2022]
Abstract
In this paper we propose and explore a method of analysis of the scattering experimental data for uniform liquidlike systems. In our pragmatic approach we are not trying to introduce by hands an artificial small parameter to work out a perturbation theory with respect to the known results, e.g., for hard spheres or sticky hard spheres (all the more that in the agreement with the notorious Landau statement, there is no physical small parameter for liquids). Instead of it being guided by the experimental data we are solving the Ornstein-Zernike equation with a trial (variational) form of the interparticle interaction potential. To find all needed correlation functions this variational input is iterated numerically to satisfy the Ornstein-Zernike equation supplemented by a closure relation. Our method is developed for spherically symmetric scattering objects, and our numeric code is written for such a case. However, it can be extended (at the expense of more involved computations and a larger amount of required experimental input information) for nonspherical particles. What is important for our approach is that it is sufficient to know experimental data in a relatively narrow range of the scattering wave vectors (q) to compute the static structure factor in a much broader range of q. We illustrate by a few model and real experimental examples of the x-ray and neutron scattering data how the approach works.
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Affiliation(s)
- E I Kats
- Landau Institute for Theoretical Physics, RAS, 142432, Chernogolovka, Moscow Region, Russia
| | - A R Muratov
- Oil and Gas Research Institute, RAS, Gubkina St. 3, Moscow, 119333, Russia.,Gubkin State University of Oil and Gas, Department of Physics, Leninsky Prospekt, 65, Moscow B-296, GSP-1, 119991, Russia
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Dhabal D, Wikfeldt KT, Skinner LB, Chakravarty C, Kashyap HK. Probing the triplet correlation function in liquid water by experiments and molecular simulations. Phys Chem Chem Phys 2017; 19:3265-3278. [DOI: 10.1039/c6cp07599a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Three-body information of liquid water is extracted using X-ray diffraction experiment as well as in molecular simulations via isothermal pressure derivative of structure factor term.
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Affiliation(s)
- Debdas Dhabal
- Department of Chemistry
- Indian Institute of Technology Delhi
- New Delhi
- India
| | | | | | | | - Hemant K. Kashyap
- Department of Chemistry
- Indian Institute of Technology Delhi
- New Delhi
- India
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Schroer MA, Westermeier F, Lehmkühler F, Conrad H, Schavkan A, Zozulya AV, Fischer B, Roseker W, Sprung M, Gutt C, Grübel G. Colloidal crystallite suspensions studied by high pressure small angle x-ray scattering. J Chem Phys 2016; 144:084903. [PMID: 26931722 DOI: 10.1063/1.4941563] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report on high pressure small angle x-ray scattering on suspensions of colloidal crystallites in water. The crystallites made out of charge-stabilized poly-acrylate particles exhibit a complex pressure dependence which is based on the specific pressure properties of the suspending medium water. The dominant effect is a compression of the crystallites caused by the compression of the water. In addition, we find indications that also the electrostatic properties of the system, i.e. the particle charge and the dissociation of ions, might play a role for the pressure dependence of the samples. The data further suggest that crystallites in a metastable state induced by shear-induced melting can relax to a similar structural state upon the application of pressure and dilution with water. X-ray cross correlation analysis of the two-dimensional scattering patterns indicates a pressure-dependent increase of the orientational order of the crystallites correlated with growth of these in the suspension. This study underlines the potential of pressure as a very relevant parameter to understand colloidal crystallite systems in aqueous suspension.
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Affiliation(s)
- M A Schroer
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - F Westermeier
- Max-Planck-Institut für Struktur und Dynamik der Materie, CFEL, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - F Lehmkühler
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - H Conrad
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - A Schavkan
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - A V Zozulya
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - B Fischer
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - W Roseker
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - M Sprung
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
| | - C Gutt
- Department of Physics, University of Siegen, Walter-Flex-Str. 3, 57072 Siegen, Germany
| | - G Grübel
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Ploetz EA, Smith PE. Particle and Energy Pair and Triplet Correlations in Liquids and Liquid Mixtures from Experiment and Simulation. J Phys Chem B 2015; 119:7761-77. [DOI: 10.1021/acs.jpcb.5b00741] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Elizabeth A. Ploetz
- Department
of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, United States
| | - Paul E. Smith
- Department
of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, United States
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Ploetz EA, Smith PE. Experimental triplet and quadruplet fluctuation densities and spatial distribution function integrals for liquid mixtures. J Chem Phys 2015; 142:094504. [PMID: 25747091 PMCID: PMC4352168 DOI: 10.1063/1.4913514] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Accepted: 02/12/2015] [Indexed: 11/15/2022] Open
Abstract
Kirkwood-Buff or Fluctuation Solution Theory can be used to provide experimental pair fluctuations, and/or integrals over the pair distribution functions, from experimental thermodynamic data on liquid mixtures. Here, this type of approach is used to provide triplet and quadruplet fluctuations, and the corresponding integrals over the triplet and quadruplet distribution functions, in a purely thermodynamic manner that avoids the use of structure factors. The approach is then applied to binary mixtures of water + methanol and benzene + methanol over the full composition range under ambient conditions. The observed correlations between the different species vary significantly with composition. The magnitude of the fluctuations and integrals appears to increase as the number of the most polar molecule involved in the fluctuation or integral also increases. A simple physical picture of the fluctuations is provided to help rationalize some of these variations.
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Affiliation(s)
- Elizabeth A Ploetz
- Department of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, USA
| | - Paul E Smith
- Department of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, USA
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Ploetz EA, Karunaweera S, Smith PE. Experimental triplet and quadruplet fluctuation densities and spatial distribution function integrals for pure liquids. J Chem Phys 2015; 142:044502. [PMID: 25637990 PMCID: PMC4312347 DOI: 10.1063/1.4905562] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Accepted: 12/22/2014] [Indexed: 11/14/2022] Open
Abstract
Fluctuation solution theory has provided an alternative view of many liquid mixture properties in terms of particle number fluctuations. The particle number fluctuations can also be related to integrals of the corresponding two body distribution functions between molecular pairs in order to provide a more physical picture of solution behavior and molecule affinities. Here, we extend this type of approach to provide expressions for higher order triplet and quadruplet fluctuations, and thereby integrals over the corresponding distribution functions, all of which can be obtained from available experimental thermodynamic data. The fluctuations and integrals are then determined using the International Association for the Properties of Water and Steam Formulation 1995 (IAPWS-95) equation of state for the liquid phase of pure water. The results indicate small, but significant, deviations from a Gaussian distribution for the molecules in this system. The pressure and temperature dependence of the fluctuations and integrals, as well as the limiting behavior as one approaches both the triple point and the critical point, are also examined.
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Affiliation(s)
- Elizabeth A Ploetz
- Department of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, USA
| | - Sadish Karunaweera
- Department of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, USA
| | - Paul E Smith
- Department of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, USA
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Fujisawa T. High Pressure Small-Angle X-Ray Scattering. Subcell Biochem 2015; 72:663-675. [PMID: 26174403 DOI: 10.1007/978-94-017-9918-8_30] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Small-angle scattering, solution scattering from proteins in solution, reflects the shape of the scatter as a spread of electron density, which is common to protein crystallography. Although the obtained resolution of small-angle scattering is inferior to that of crystallography, it shows the global image of protein structure in solution without constraints of neighboring molecules in crystal lattice. At ambient pressure, data collection technology and analyses of small-angle scattering method developed so greatly in recent 10 years that it is recognized as one of the powerful method of structural biology. In parallel, many efforts have been made to apply this technique under high pressure. The instrumentation and interpretation of small-angle scattering under pressure, however, requires special considerations. The present chapter reviews the technological aspect of scattering from protein solution especially optimized for synchrotron X-ray sources.
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Affiliation(s)
- Tetsuro Fujisawa
- Department of Chemistry and Biomolecular Science, Gifu University, 1-1 Yanagido, Gifu, 501-1193, Japan,
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11
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Grobelny S, Erlkamp M, Möller J, Tolan M, Winter R. Intermolecular interactions in highly concentrated protein solutions upon compression and the role of the solvent. J Chem Phys 2014; 141:22D506. [DOI: 10.1063/1.4895542] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Affiliation(s)
- S. Grobelny
- Faculty of Chemistry, Physical Chemistry-Biophysical Chemistry, TU Dortmund, Otto-Hahn Str. 6, 44227 Dortmund, Germany
| | - M. Erlkamp
- Faculty of Chemistry, Physical Chemistry-Biophysical Chemistry, TU Dortmund, Otto-Hahn Str. 6, 44227 Dortmund, Germany
| | - J. Möller
- Fakultät Physik/DELTA, TU Dortmund, Maria-Goeppert-Mayer-Str. 2, 44227 Dortmund, Germany
| | - M. Tolan
- Fakultät Physik/DELTA, TU Dortmund, Maria-Goeppert-Mayer-Str. 2, 44227 Dortmund, Germany
| | - R. Winter
- Faculty of Chemistry, Physical Chemistry-Biophysical Chemistry, TU Dortmund, Otto-Hahn Str. 6, 44227 Dortmund, Germany
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Schroer MA, Gutt C, Grübel G. Characteristics of angular cross correlations studied by light scattering from two-dimensional microsphere films. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:012309. [PMID: 25122305 DOI: 10.1103/physreve.90.012309] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2014] [Indexed: 06/03/2023]
Abstract
Recently the analysis of scattering patterns by angular cross-correlation analysis (CCA) was introduced to reveal the orientational order in disordered samples with special focus to future applications on x-ray free-electron laser facilities. We apply this CCA approach to ultra-small-angle light-scattering data obtained from two-dimensional monolayers of microspheres. The films were studied in addition by optical microscopy. This combined approach allows to calculate the cross-correlations of the scattering patterns, characterized by the orientational correlation function Ψ(l)(q), as well as to obtain the real-space structure of the monolayers. We show that CCA is sensitive to the orientational order of monolayers formed by the microspheres which are not directly visible from the scattering patterns. By mixing microspheres of different radii the sizes of ordered monolayer domains is reduced. For these samples it is shown that Ψ(l)(q) quantitatively describes the degree of hexagonal order of the two-dimensional films. The experimental CCA results are compared with calculations based on the microscopy images. Both techniques show qualitatively similar features. Differences can be attributed to the wave-front distortion of the laser beam in the experiment. This effect is discussed by investigating the effect of different wave fronts on the cross-correlation analysis results. The so-determined characteristics of the cross-correlation analysis will be also relevant for future x-ray-based studies.
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Affiliation(s)
- M A Schroer
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany and and The Hamburg Centre for Ultrafast Imaging (CUI), Luruper Chausee 149, 22761 Hamburg, Germany
| | - C Gutt
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany and and The Hamburg Centre for Ultrafast Imaging (CUI), Luruper Chausee 149, 22761 Hamburg, Germany
| | - G Grübel
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany and and The Hamburg Centre for Ultrafast Imaging (CUI), Luruper Chausee 149, 22761 Hamburg, Germany
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Blanco MA, Perevozchikova T, Martorana V, Manno M, Roberts CJ. Protein-protein interactions in dilute to concentrated solutions: α-chymotrypsinogen in acidic conditions. J Phys Chem B 2014; 118:5817-31. [PMID: 24810917 PMCID: PMC4051245 DOI: 10.1021/jp412301h] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Protein-protein interactions were investigated for α-chymotrypsinogen by static and dynamic light scattering (SLS and DLS, respectively), as well as small-angle neutron scattering (SANS), as a function of protein and salt concentration at acidic conditions. Net protein-protein interactions were probed via the Kirkwood-Buff integral G22 and the static structure factor S(q) from SLS and SANS data. G22 was obtained by regressing the Rayleigh ratio versus protein concentration with a local Taylor series approach, which does not require one to assume the underlying form or nature of intermolecular interactions. In addition, G22 and S(q) were further analyzed by traditional methods involving fits to effective interaction potentials. Although the fitted model parameters were not always physically realistic, the numerical values for G22 and S(q → 0) were in good agreement from SLS and SANS as a function of protein concentration. In the dilute regime, fitted G22 values agreed with those obtained via the osmotic second virial coefficient B22 and showed that electrostatic interactions are the dominant contribution for colloidal interactions in α-chymotrypsinogen solutions. However, as protein concentration increases, the strength of protein-protein interactions decreases, with a more pronounced decrease at low salt concentrations. The results are consistent with an effective "crowding" or excluded volume contribution to G22 due to the long-ranged electrostatic repulsions that are prominent even at the moderate range of protein concentrations used here (<40 g/L). These apparent crowding effects were confirmed and quantified by assessing the hydrodynamic factor H(q → 0), which is obtained by combining measurements of the collective diffusion coefficient from DLS data with measurements of S(q → 0). H(q → 0) was significantly less than that for a corresponding hard-sphere system and showed that hydrodynamic nonidealities can lead to qualitatively incorrect conclusions regarding B22, G22, and static protein-protein interactions if one uses only DLS to assess protein interactions.
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Affiliation(s)
- Marco A Blanco
- Department of Chemical and Biomolecular Engineering, University of Delaware , Newark, Delaware 19716, United States
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