A Comprehensive Picture of the Structures, Energies, and Bonding in the Alanine Dimers

High level quantum mechanical computations and extensive stochastic searches of the potential energy surfaces of the Alanine dimers uncover rich and complex structural and interaction landscapes. A total of 416 strongly bound (up 13.4 kcal mol^-1 binding energies at the DLPNO-CCSD(T)/6-311++G(d,p) level corrected by the basis set superposition error and by the zero point vibrational energies over B3LYP-D3 geometries), close energy equilibrium structures were located, bonded via 32 specific types of intermolecular contacts including Y⋅⋅⋅H-X primary and Y⋅⋅⋅H-C secondary hydrogen bonds, H⋅⋅⋅H dihydrogen contacts, and non conventional anti-electrostatic Y δ - ⋯ X δ - interactions. The putative global minimum is triply degenerate, corresponding to the structure of the common dimer of a carboxylic acid. All quantum descriptors of chemical bonding point to a multitude of weak individual interactions within each dimer, whose cumulative effect results in large binding energies and in an attractive fluxional wall of non-covalent interactions in the interstitial region between the monomers.

A molecular twist on hydrophobicity

A thorough exploration of the molecular basis for hydrophobicity with a comprehensive set of theoretical tools and an extensive set of organic solvent S/water binary systems is discussed in this work. Without a single exception, regardless of the nature or structure of S, all quantum descriptors of bonding yield stabilizing S⋯water interactions, therefore, there is no evidence of repulsion and thus no reason for etymological hydrophobicity at the molecular level. Our results provide molecular insight behind the exclusion of S molecules by water, customarily invoked to explain phase separation and the formation of interfaces, in favor of a complex interplay between entropic, enthalpic, and dynamic factors. S⋯water interfaces are not just thin films separating the two phases; instead, they are non-isotropic regions with density gradients for each component whose macroscopic stability is provided by a large number of very weak dihydrogen contacts. We offer a definition of interface as the region in which the density of the components in the A/B binary system is not constant. At a fundamental level, our results contribute to better current understanding of hydrophobicity.

Notwithstanding the very weak nature of individual contacts, it is the cumulative effect of a large number of interactions (green NCI surfaces) which provides macroscopic stability to the interfaces.

Fe3+chelating quinoline–hydrazone hybrids with proven cytotoxicity, leishmanicidal, and trypanocidal activities

Neglected tropical diseases cause great concern in developing countries where there are millions of reported infected humans. Our calculations support a direct relationship between biological activity and the Fe³⁺chelating ability of the shown set of quinoline–hydrazone hybrids.

Probing Dative and Dihydrogen Bonding in Ammonia Borane with Electronic Structure Computations and Raman under Nitrogen Spectroscopy

Although ammonia borane is isoelectronic with ethane and they have similar structures, BH₃NH₃ exhibits rather atypical bonding compared to that in CH₃CH₃. The central bond in ammonia borane is actually a coordinate covalent or dative bond rather than the conventional covalent C-C bond in ethane where each atom donates one electron. In addition, strong intermolecular dihydrogen bonds can form between two or more ammonia borane molecules compared to the relatively weak dispersion forces between ethane molecules. As a result, ammonia borane's physical properties are very sensitive to the environment. For example, gas-phase and solid-state ammonia borane have very different BN bond lengths and BN stretching frequencies, which led to much debate in the literature. It has been demonstrated that the use of cluster models based on experimental crystal structures led to better agreement between theory and experiment. Here, we employ a variety of cluster models to track how the interaction energies, bond lengths, and vibrational normal modes evolve with the size and structural characteristics of the clusters. The M06-2X/6-311++G(2df,2pd) level of theory was selected for this analysis on the basis of favorable comparison with CCSD(T)/aug-cc-pVTZ data for the ammonia borane monomer and dimer. Fourteen unique fully optimized molecular cluster geometries, (BH₃NH₃)_n≤12, and nine crystal models, (BH₃NH₃)_n≤19, were used to elucidate how the local environment impacts ammonia borane's physical properties. Computational results for the BN stretching frequencies are also compared directly to the Raman spectrum of solid ammonia borane at 77 K using Raman under liquid nitrogen spectroscopy (RUNS). A strong linear correlation was found to exist between the BN bond length and stretching frequency, from an isolated monomer to the most distorted BH₃NH₃ unit in a cluster or crystal structure model. Excellent agreement was seen between the frequencies computed for the largest crystal model and the RUNS experimental spectra (typically within a few wavenumbers).

Microsolvation of NO3−: structural exploration and bonding analysis

A rich and complex structural diversity is uncovered in the microsolvation of the nitrate anion.

Aggregation of nitroaniline in tetrahydrofuran through intriguing H-bond formation by sodium borohydride

The participation of sodium borohydride (NaBH4) in hydrogen bonding interactions and transient anion radical formation has been proved. Thus, the properties of NaBH4 are extended beyond the purview of its normal reducing capability and nucleophilic property. It is reported that ortho- and para-nitroanilines (NAs) form stable aggregates only in tetrahydrofuran (THF) in the presence of NaBH4 and unprecedented orange/red colorations are observed. The same recipe with nitrobenzene instead of nitroanilines (NAs) in the presence of NaBH4 evolves a transient rose red solution due to the formation of a highly fluorescent anion radical. Spectroscopic studies (UV-vis, fluorescence, RLS, Raman, NMR etc.) as well as theoretical calculations supplement the J-aggregate formation of NAs due to extensive hydrogen bonding. This is the first report where BH4(-) in THF has been shown to support such an aggregation process through H-bonding. It is further confirmed that stable intermolecular hydrogen bond-induced aggregation requires a geometrical match in both the nitro- and amino-functionalities attached to the phenyl ring with proper geometry. On the contrary, meta-nitroaniline remains as the odd man out and does not take part in such aggregation. Surprisingly, Au nanoparticles dismantle the J-aggregates of NA in THF. Explicit hydrogen bond formation in NA has been confirmed experimentally considering its promising applications in different fields including non-linear optics.

Dihydrogen bond intermediated alcoholysis of dimethylamine-borane in nonaqueous media

Dimethylamine-borane (DMAB) acid/base properties, its dihydrogen-bonded (DHB) complexes and proton transfer reaction in nonaqueous media were investigated both experimentally (IR, UV/vis, NMR, and X-ray) and theoretically (DFT, NBO, QTAIM, and NCI). The effects of DMAB concentration, solvents polarity and temperature on the degree of DMAB self-association are shown and the enthalpy of association is determined experimentally for the first time (-ΔH°assoc = 1.5-2.3 kcal/mol). The first case of "improper" (blue-shifting) NH···F hydrogen bonds was observed in fluorobenzene and perfluorobenzene solutions. It was shown that hydrogen-bonded complexes are the intermediates of proton transfer from alcohols and phenols to DMAB. The reaction mechanism was examined computationally taking into account the coordinating properties of the reaction media. The values of the rate constants of proton transfer from HFIP to DMAB in acetone were determined experimentally [(7.9 ± 0.1) × 10(-4) to (1.6 ± 0.1) × 10(-3) mol(-1)·s(-1)] at 270-310 K. Computed activation barrier of this reaction ΔG(‡theor)298 K(acetone) = 23.8 kcal/mol is in good agreement with the experimental value of the activation free energy ΔG(‡exp)270 K = 21.1 kcal/mol.

Desorption of hydrogen from light metal hydrides: concerted electronic rearrangement and role of H⋯H interactions

The synergic interplay of H⋯H and M–H interactions in the evolution of H₂ from binary metal hydrides is revealed.