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1
Chen T, Ye Y, Wang Y, Fang C, Lin W, Jiang Y, Xu B, Ouyang C, Zheng J. Tuning a small electron polaron in FePO4 by P-site or O-site doping based on DFT+U and KMC simulation. Phys Chem Chem Phys 2023;25:8734-8742. [PMID: 36896849 DOI: 10.1039/d2cp06034e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]
2
Ahart CS, Rosso KM, Blumberger J. Implementation and Validation of Constrained Density Functional Theory Forces in the CP2K Package. J Chem Theory Comput 2022;18:4438-4446. [PMID: 35700315 PMCID: PMC9281399 DOI: 10.1021/acs.jctc.2c00284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
3
Zotti LA, Dednam W, Lombardi EB, Palacios JJ. Constrained DFT for Molecular Junctions. NANOMATERIALS 2022;12:nano12071234. [PMID: 35407352 PMCID: PMC9002544 DOI: 10.3390/nano12071234] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 03/31/2022] [Accepted: 04/04/2022] [Indexed: 02/01/2023]
4
Ahart CS, Rosso KM, Blumberger J. Electron and Hole Mobilities in Bulk Hematite from Spin-Constrained Density Functional Theory. J Am Chem Soc 2022;144:4623-4632. [PMID: 35239359 PMCID: PMC9097473 DOI: 10.1021/jacs.1c13507] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
5
Ziogos OG, Blumberger J. Ultrafast estimation of electronic couplings for electron transfer between pi-conjugated organic molecules. II. J Chem Phys 2021;155:244110. [PMID: 34972358 DOI: 10.1063/5.0076555] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
6
Ziogos OG, Kubas A, Futera Z, Xie W, Elstner M, Blumberger J. HAB79: A new molecular dataset for benchmarking DFT and DFTB electronic couplings against high-level ab initio calculations. J Chem Phys 2021;155:234115. [PMID: 34937363 DOI: 10.1063/5.0076010] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
7
Carey JJ, Quirk JA, McKenna KP. Hole Polaron Migration in Bulk Phases of TiO2 Using Hybrid Density Functional Theory. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2021;125:12441-12450. [PMID: 34276864 PMCID: PMC8279702 DOI: 10.1021/acs.jpcc.1c03136] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 05/06/2021] [Indexed: 06/13/2023]
8
Barragan AM, Soudackov AV, Luthey-Schulten Z, Hammes-Schiffer S, Schulten K, Solov'yov IA. Theoretical Description of the Primary Proton-Coupled Electron Transfer Reaction in the Cytochrome bc1 Complex. J Am Chem Soc 2021;143:715-723. [PMID: 33397104 DOI: 10.1021/jacs.0c07799] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
9
Ghan S, Kunkel C, Reuter K, Oberhofer H. Improved Projection-Operator Diabatization Schemes for the Calculation of Electronic Coupling Values. J Chem Theory Comput 2020;16:7431-7443. [DOI: 10.1021/acs.jctc.0c00887] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
10
Gütlein P, Blumberger J, Oberhofer H. An Iterative Fragment Scheme for the ACKS2 Electronic Polarization Model: Application to Molecular Dimers and Chains. J Chem Theory Comput 2020;16:5723-5735. [PMID: 32701273 DOI: 10.1021/acs.jctc.0c00151] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
11
Giannini S, Ziogos OG, Carof A, Ellis M, Blumberger J. Flickering Polarons Extending over Ten Nanometres Mediate Charge Transport in High‐Mobility Organic Crystals. ADVANCED THEORY AND SIMULATIONS 2020. [DOI: 10.1002/adts.202000093] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
12
Ma H, Wang W, Kim S, Cheng MH, Govoni M, Galli G. PyCDFT: A Python package for constrained density functional theory. J Comput Chem 2020;41:1859-1867. [PMID: 32497321 DOI: 10.1002/jcc.26354] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 05/14/2020] [Accepted: 05/15/2020] [Indexed: 12/12/2022]
13
Blumberger J, Gaigeot MP, Sulpizi M, Vuilleumier R. Frontiers in molecular simulation of solvated ions, molecules and interfaces. Phys Chem Chem Phys 2020;22:10393-10396. [PMID: 32352136 DOI: 10.1039/d0cp90091e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
14
Futera Z, Jiang X, Blumberger J. Ergodicity Breaking in Thermal Biological Electron Transfer? Cytochrome C Revisited II. J Phys Chem B 2020;124:3336-3342. [PMID: 32223243 DOI: 10.1021/acs.jpcb.0c01414] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
15
Smith B, Akimov AV. Modeling nonadiabatic dynamics in condensed matter materials: some recent advances and applications. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020;32:073001. [PMID: 31661681 DOI: 10.1088/1361-648x/ab5246] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
16
Ahart CS, Blumberger J, Rosso KM. Polaronic structure of excess electrons and holes for a series of bulk iron oxides. Phys Chem Chem Phys 2020;22:10699-10709. [DOI: 10.1039/c9cp06482f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
17
Carof A, Giannini S, Blumberger J. How to calculate charge mobility in molecular materials from surface hopping non-adiabatic molecular dynamics - beyond the hopping/band paradigm. Phys Chem Chem Phys 2019;21:26368-26386. [PMID: 31793569 DOI: 10.1039/c9cp04770k] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
18
Ku C, Sit PHL. Oxidation-State Constrained Density Functional Theory for the Study of Electron-Transfer Reactions. J Chem Theory Comput 2019;15:4781-4789. [PMID: 31339717 DOI: 10.1021/acs.jctc.9b00281] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
19
Jiang X, Futera Z, Blumberger J. Ergodicity-Breaking in Thermal Biological Electron Transfer? Cytochrome C Revisited. J Phys Chem B 2019;123:7588-7598. [PMID: 31405279 DOI: 10.1021/acs.jpcb.9b05253] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
20
Migliore A. How To Extract Quantitative Information on Electronic Transitions from the Density Functional Theory "Black Box". J Chem Theory Comput 2019;15:4915-4923. [PMID: 31314526 DOI: 10.1021/acs.jctc.9b00518] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
21
Carof A, Giannini S, Blumberger J. Detailed balance, internal consistency, and energy conservation in fragment orbital-based surface hopping. J Chem Phys 2018;147:214113. [PMID: 29221382 DOI: 10.1063/1.5003820] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
22
Water Structure and Mechanisms of Proton Discharge on Platinum Electrodes: Empirical Valence Bond Molecular Dynamics Trajectory Studies. Electrocatalysis (N Y) 2017. [DOI: 10.1007/s12678-017-0398-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
23
Kim H, Goodson T, Zimmerman PM. Density Functional Physicality in Electronic Coupling Estimation: Benchmarks and Error Analysis. J Phys Chem Lett 2017;8:3242-3248. [PMID: 28661148 DOI: 10.1021/acs.jpclett.7b01434] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
24
Oberhofer H, Reuter K, Blumberger J. Charge Transport in Molecular Materials: An Assessment of Computational Methods. Chem Rev 2017. [PMID: 28644623 DOI: 10.1021/acs.chemrev.7b00086] [Citation(s) in RCA: 191] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
25
von Rudorff GF, Jakobsen R, Rosso KM, Blumberger J. Improving the Performance of Hybrid Functional-Based Molecular Dynamics Simulation through Screening of Hartree-Fock Exchange Forces. J Chem Theory Comput 2017;13:2178-2184. [PMID: 28350956 DOI: 10.1021/acs.jctc.6b01121] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Goldey MB, Brawand NP, Vörös M, Galli G. Charge Transport in Nanostructured Materials: Implementation and Verification of Constrained Density Functional Theory. J Chem Theory Comput 2017;13:2581-2590. [DOI: 10.1021/acs.jctc.7b00088] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Nakano H, Sato H. Introducing the mean field approximation to CDFT/MMpol method: Statistically converged equilibrium and nonequilibrium free energy calculation for electron transfer reactions in condensed phases. J Chem Phys 2017;146:154101. [DOI: 10.1063/1.4979895] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
28
Goldey MB, Reid D, de Pablo J, Galli G. Planarity and multiple components promote organic photovoltaic efficiency by improving electronic transport. Phys Chem Chem Phys 2016;18:31388-31399. [PMID: 27722501 DOI: 10.1039/c6cp04999k] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
29
von Rudorff GF, Jakobsen R, Rosso KM, Blumberger J. Hematite(001)-liquid water interface from hybrid density functional-based molecular dynamics. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2016;28:394001. [PMID: 27464954 DOI: 10.1088/0953-8984/28/39/394001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
30
Spencer J, Gajdos F, Blumberger J. FOB-SH: Fragment orbital-based surface hopping for charge carrier transport in organic and biological molecules and materials. J Chem Phys 2016. [DOI: 10.1063/1.4960144] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
31
Schober C, Reuter K, Oberhofer H. Critical analysis of fragment-orbital DFT schemes for the calculation of electronic coupling values. J Chem Phys 2016;144:054103. [PMID: 26851904 DOI: 10.1063/1.4940920] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
32
Spencer J, Scalfi L, Carof A, Blumberger J. Confronting surface hopping molecular dynamics with Marcus theory for a molecular donor–acceptor system. Faraday Discuss 2016;195:215-236. [DOI: 10.1039/c6fd00107f] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
33
Blumberger J. Recent Advances in the Theory and Molecular Simulation of Biological Electron Transfer Reactions. Chem Rev 2015;115:11191-238. [DOI: 10.1021/acs.chemrev.5b00298] [Citation(s) in RCA: 238] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
34
Kubas A, Gajdos F, Heck A, Oberhofer H, Elstner M, Blumberger J. Electronic couplings for molecular charge transfer: benchmarking CDFT, FODFT and FODFTB against high-level ab initio calculations. II. Phys Chem Chem Phys 2015;17:14342-54. [PMID: 25573447 DOI: 10.1039/c4cp04749d] [Citation(s) in RCA: 102] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
35
MgO nanobelt-modified graphene-tantalum wire electrode for the simultaneous determination of ascorbic acid, dopamine and uric acid. Electrochim Acta 2015. [DOI: 10.1016/j.electacta.2015.03.215] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
36
Kweon KE, Hwang GS, Kim J, Kim S, Kim S. Electron small polarons and their transport in bismuth vanadate: a first principles study. Phys Chem Chem Phys 2015;17:256-60. [DOI: 10.1039/c4cp03666b] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
37
Kubas A, Hoffmann F, Heck A, Oberhofer H, Elstner M, Blumberger J. Electronic couplings for molecular charge transfer: benchmarking CDFT, FODFT, and FODFTB against high-level ab initio calculations. J Chem Phys 2014;140:104105. [PMID: 24628150 DOI: 10.1063/1.4867077] [Citation(s) in RCA: 127] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
38
Zhang YM, Wang X, Zhang W, Li W, Yang B, Li M, Zhang SXA. Cross polarization effect of donor-acceptor group on a potential single-molecule transistor. J PHYS ORG CHEM 2014. [DOI: 10.1002/poc.3345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
39
Gajdos F, Valner S, Hoffmann F, Spencer J, Breuer M, Kubas A, Dupuis M, Blumberger J. Ultrafast Estimation of Electronic Couplings for Electron Transfer between π-Conjugated Organic Molecules. J Chem Theory Comput 2014;10:4653-60. [DOI: 10.1021/ct500527v] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
40
Migliore A, Polizzi NF, Therien M, Beratan DN. Biochemistry and theory of proton-coupled electron transfer. Chem Rev 2014;114:3381-465. [PMID: 24684625 PMCID: PMC4317057 DOI: 10.1021/cr4006654] [Citation(s) in RCA: 354] [Impact Index Per Article: 35.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2013] [Indexed: 02/01/2023]
41
Futera Z, Sodeyama K, Burda JV, Einaga Y, Tateyama Y. A double-QM/MM method for investigating donor–acceptor electron-transfer reactions in solution. Phys Chem Chem Phys 2014;16:19530-9. [DOI: 10.1039/c4cp02307b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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