Toward in Silico Modeling of Dynamic Combinatorial Libraries

Dynamic combinatorial libraries (DCLs) display adaptive behavior, enabled by the reversible generation of their molecular constituents from building blocks, in response to external effectors, e.g., protein receptors. So far, chemoinformatics has not yet been used for the design of DCLs-which comprise a radically different set of challenges compared to classical library design. Here, we propose a chemoinformatic model for theoretically assessing the composition of DCLs in the presence and the absence of an effector. An imine-based DCL in interaction with the effector human carbonic anhydrase II (CA II) served as a case study. Support vector regression models for the imine formation constants and imine-CA II binding were derived from, respectively, a set of 276 imines synthesized and experimentally studied in this work and 4350 inhibitors of CA II from ChEMBL. These models predict constants for all DCL constituents, to feed software assessing equilibrium concentrations. They are publicly available on the dedicated website. Models rationally selected two amines and two aldehydes predicted to yield stable imines with high affinity for CA II and provided a virtual illustration on how effector affinity regulates DCL members.

Spontaneous macrocyclization through multiple dynamic cyclic aminal formation

The use of aminals in dynamic covalent chemistry is slightly underexplored, probably due to their inherent instability. Here we report the spontaneous [2+2] macrocyclization of tetrakis(aminals). Their unexpected stability and structural modularity, the dynamic nature of the connections and their water tolerance make them appealing systems for future applications as stimulus-responsive materials.

Coordination Dynamics and Thermal Stability with Aminal Metallogels and Liquids

In this article, we review a dynamic covalent gel system developed as a high temperature well construction fluid. The key gel/fluid phase changes and related materials properties are addressable via the constitutional and coordination dynamics of the equilibrium and non-equilibrium molecular species comprising the material. The interplay between these species and external stimuli leads to material adaptability. Specifically, the introduction of metal ions into a non-equilibrium hemiaminal gel reverts this phase into a non-equilibrium liquid. When heated, this liquid transforms itself catalytically into the thermodynamically favoured closed-ring polyhexahydrotriazine (PHT) gel product. The temperature stability of different PHT gel formulations is evaluated as a function of the inclusion of various salts. It is possible to revert this thermodynamic PHT gel back into a liquid. This pH dependent transformation depends on the R groups linking the hexahydrotriazines (HTs) to one another. While polyethylene glycol (PEG) based PHT gels revert to liquids with water and mild protonation conditions, in comparison, polypropylene glycol (PPG) based gels require stronger acid conditions with heat, or a different more nucleophilically driven ring-opening mechanism by, for example, phosphines. The covalent dynamic chemistry in this chemical system gives way to many possible applications in addition to the high temperature solution-gelation (sol-gels) for which it has been primarily designed.

Generation and transformation of a hemi-iminal-based metal–organic Fe(ii) structure obtained via subcomponent self-assembly in water

Generation of hemi-iminal Fe(ii) species from subcomponent self-assembly in water.