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Serebryanskaya TV, Novikov AS, Gushchin PV, Haukka M, Asfin RE, Tolstoy PM, Kukushkin VY. Identification and H(D)-bond energies of C-H(D)Cl interactions in chloride-haloalkane clusters: a combined X-ray crystallographic, spectroscopic, and theoretical study. Phys Chem Chem Phys 2017; 18:14104-12. [PMID: 27157359 DOI: 10.1039/c6cp00861e] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cationic (1,3,5-triazapentadiene)Pt(II) complex [Pt{NH[double bond, length as m-dash]C(N(CH2)5)N(Ph)C(NH2)[double bond, length as m-dash]NPh}2]Cl2 ([]Cl2) was crystallized from four haloalkane solvents giving [][Cl2(CDCl3)4], [][Cl2(CHBr3)4], [][Cl2(CH2Cl2)2], and [][Cl2(C2H4Cl2)2] solvates that were studied by X-ray diffraction. In the crystal structures of [][Cl2(CDCl3)4] and [][Cl2(CHBr3)4], the Cl(-) ion interacts with two haloform molecules via C-DCl(-) and C-HCl(-) contacts, thus forming the negatively charged isostructural clusters [Cl(CDCl3)2](-) and [Cl(CHBr3)2](-). In the structures of [][Cl2(CH2Cl2)2] and [][Cl2(C2H4Cl2)2], cations [](2+) are linked to a 3D-network by a system of H-bondings including one formed by each Cl(-) ion with CH2Cl2 or C2H4Cl2 molecules. The lengths and energies of these H-bonds in the chloride-haloalkane clusters were analyzed by DFT calculations (M06 functional) including AIM analysis. The crystal packing noticeably affected the geometry of the clusters, and energy of C-HCl(-) hydrogen bonds ranged from 1 to 6 kcal mol(-1). An exponential correlation (R(2) > 0.98) between the calculated Cl(-)H distances and the energies of the corresponding contacts was found and used to calculate hydrogen bond energies from the experimental Cl(-)H distances. Predicted energy values (3.3-3.9 kcal mol(-1) for the [Cl(CHCl3)2](-) cluster) are in a reasonable agreement with the energy of the Cl3C-HCl(-) bond estimated using ATRFTIR spectroscopy (2.7 kcal mol(-1)).
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Affiliation(s)
- Tatiyana V Serebryanskaya
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation.
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation.
| | - Pavel V Gushchin
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation.
| | - Matti Haukka
- Department of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Ruslan E Asfin
- Department of Physics, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation
| | - Peter M Tolstoy
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation.
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., 199034 Saint Petersburg, Russian Federation. and Institute of Macromolecular Compounds of Russian Academy of Sciences, Bolshoii Pr. 31, 199004 Saint Petersburg, Russian Federation
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Ivanov DM, Gushchin PV, Novikov AS, Avdontceva MS, Zolotarev AA, Starova GL, Chen Y, Liu S, Chou P, Kukushkin VY. Platinum(II)‐Mediated Double Coupling of 2,3‐Diphenylmaleimidine with Nitrile Functionalities To Give Annulated Pentaazanonatetraenate (PANT) Systems. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201501398] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Daniil M. Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
| | - Pavel V. Gushchin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
| | - Alexander S. Novikov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
| | - Margarita S. Avdontceva
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
| | - Andrey A. Zolotarev
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
| | - Galina L. Starova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
| | - Yi‐Ting Chen
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, http://www.ch.ntu.edu.tw/~ptchou/
| | - Shih‐Hung Liu
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, http://www.ch.ntu.edu.tw/~ptchou/
| | - Pi‐Tai Chou
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, http://www.ch.ntu.edu.tw/~ptchou/
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, http://ptchemin.chem.spbu.ru/
- Institute of Macromolecular Compounds of the Russian Academy of Sciences, V. O. Bolshoi Pr. 31, 199004 Saint Petersburg, Russian Federation
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Ivanov DM, Novikov AS, Starova GL, Haukka M, Kukushkin VY. A family of heterotetrameric clusters of chloride species and halomethanes held by two halogen and two hydrogen bonds. CrystEngComm 2016. [DOI: 10.1039/c6ce01179a] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Ivanov DM, Kirina YV, Novikov AS, Starova GL, Kukushkin VY. Efficient π-stacking with benzene provides 2D assembly of trans-[PtCl2(p-CF3C6H4CN)2]. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2015.09.027] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Gushchin PV, Kuznetsov ML, Haukka M, Kukushkin VY. Anionic Halide···Alcohol Clusters in the Solid State. J Phys Chem A 2014; 118:9529-39. [DOI: 10.1021/jp506256a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Pavel V. Gushchin
- Institute
of Chemistry, Saint Petersburg State University, 198504 Stary Petergof, Russian Federation
| | - Maxim L. Kuznetsov
- Centro
de Química Estrutural, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal
| | - Matti Haukka
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland
| | - Vadim Yu. Kukushkin
- Institute
of Chemistry, Saint Petersburg State University, 198504 Stary Petergof, Russian Federation
- Institute
of Macromolecular Compounds of Russian Academy of Sciences, V. O. Bolshoii
Pr. 31, 199004, Saint Petersburg, Russian Federation
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Eliseev II, Gushchin PV, Chen YA, Chou PT, Haukka M, Starova GL, Kukushkin VY. Phosphorescent PtIISystems Featuring Both 2,2′-Dipyridylamine and 1,3,5-Triazapentadiene Ligands. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402364] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Bolotin DS, Bokach NA, Kritchenkov AS, Haukka M, Kukushkin VY. Amidrazone Complexes from a Cascade Platinum(II)-Mediated Reaction between Amidoximes and Dialkylcyanamides. Inorg Chem 2013; 52:6378-89. [DOI: 10.1021/ic4000878] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Dmitrii S. Bolotin
- Department
of Chemistry, Saint
Petersburg State University, Universitetsky Pr. 26, 198504 Stary Petergof,
Russian Federation
| | - Nadezhda A. Bokach
- Department
of Chemistry, Saint
Petersburg State University, Universitetsky Pr. 26, 198504 Stary Petergof,
Russian Federation
| | - Andreii S. Kritchenkov
- Department
of Chemistry, Saint
Petersburg State University, Universitetsky Pr. 26, 198504 Stary Petergof,
Russian Federation
| | - Matti Haukka
- Department
of Chemistry, University
of Jyväskylä, Finland, P.O. Box 35, FI-40014 University
of Jyväskylä, Finland
| | - Vadim Yu. Kukushkin
- Department
of Chemistry, Saint
Petersburg State University, Universitetsky Pr. 26, 198504 Stary Petergof,
Russian Federation
- Institute of Macromolecular Compounds
of Russian Academy of Sciences, V.O. Bolshoii Pr. 31, 199004 Saint
Petersburg, Russian Federation
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Gushchin PV, Kuznetsov ML, Haukka M, Kukushkin VY. Recognition of a Novel Type X═N–Hal···Hal (X = C, S, P; Hal = F, Cl, Br, I) Halogen Bonding. J Phys Chem A 2013; 117:2827-34. [DOI: 10.1021/jp3112149] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Pavel V. Gushchin
- Department of Chemistry, Saint Petersburg State University, 198504 Stary Petergof,
Russian Federation
| | - Maxim L. Kuznetsov
- Centro
de Química Estrutural,
Complexo I, Instituto Superior Técnico, Universidade Técnica de Lisboa, Av. Rovisco Pais, 1049-001
Lisbon, Portugal
| | - Matti Haukka
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35,
FI-40014, Jyväskylä, Finland
| | - Vadim Yu. Kukushkin
- Department of Chemistry, Saint Petersburg State University, 198504 Stary Petergof,
Russian Federation
- Institute of Macromolecular Compounds of Russian Academy of Sciences, V. O. Bolshoii
Pr. 31, 199004, Saint Petersburg, Russian Federation
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Zhao XR, Wu YJ, Han J, Shen QJ, Jin WJ. Theoretical study of the triangular bonding complex formed by carbon tetrabromide, a halide, and a solvent molecule in the gas phase. J Mol Model 2012; 19:299-304. [PMID: 22890747 DOI: 10.1007/s00894-012-1518-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2012] [Accepted: 06/25/2012] [Indexed: 11/28/2022]
Abstract
MP2(full)/aug-cc-pVDZ(-PP) computations predict that new triangular bonding complexes CBr4...X-...H-C (where X- is a halide and H-C refers to a protic solvent molecule) consist of one halogen bond and two hydrogen bonds in the gas phase. Carbon tetrabromide acts as the donor in the halogen bond, while it acts as an acceptor in the hydrogen bond. The halide (which commonly acts as an acceptor) can interact with both carbon tetrabromide and solvent molecule (CH3CN, CH2Cl2, CHCl3) to form a halogen bond and a hydrogen bond, respectively. The strength of the halogen bond obeys the order CBr4...Cl->CBr4...Br->CBr4...I-. For the hydrogen bonds formed between various halides and the same solvent molecule, the strength of the hydrogen bond obeys the order C-H...Cl->C-H...Br->C-H...I-. For the hydrogen bonds formed between the same halide and various solvent molecules, the interaction strength is proportional to the acidity of the hydrogen in the solvent molecule. The diminutive effect is present between the hydrogen bonds and the halogen bond in chlorine and bromine triangular bonding complexes. Complexes containing iodide ion show weak cooperative effects.
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Affiliation(s)
- Xiao Ran Zhao
- College of Chemistry, Beijing Normal University, Beijing, 100875, People's Republic of China
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