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Number Cited by Other Article(s)
1
Bulygin KN, Timofeev IO, Malygin AA, Graifer DM, Meschaninova MI, Venyaminova AG, Krumkacheva OA, Fedin MV, Yu Frolova L, Karpova GG, Bagryanskaya EG. Two alternative conformations of mRNA in the human ribosome during elongation and termination of translation as revealed by EPR spectroscopy. Comput Struct Biotechnol J 2021;19:4702-4710. [PMID: 34504663 PMCID: PMC8390954 DOI: 10.1016/j.csbj.2021.08.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 08/12/2021] [Accepted: 08/16/2021] [Indexed: 11/29/2022]  Open
2
Dégut C, Schwarz V, Ponchon L, Barraud P, Micura R, Tisné C. Design of cross-linked RNA/protein complexes for structural studies. Biochimie 2019;164:95-98. [DOI: 10.1016/j.biochi.2019.03.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Accepted: 03/28/2019] [Indexed: 10/27/2022]
3
Malygin AA, Graifer DM, Meschaninova MI, Venyaminova AG, Timofeev IO, Kuzhelev AA, Krumkacheva OA, Fedin MV, Karpova GG, Bagryanskaya EG. Structural rearrangements in mRNA upon its binding to human 80S ribosomes revealed by EPR spectroscopy. Nucleic Acids Res 2019;46:897-904. [PMID: 29156000 PMCID: PMC5778603 DOI: 10.1093/nar/gkx1136] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Accepted: 10/30/2017] [Indexed: 12/21/2022]  Open
4
Ochkasova AS, Meschaninova MI, Venyaminova AG, Ivanov AV, Graifer DM, Karpova GG. The human ribosome can interact with the abasic site in mRNA via a specific peptide of the uS3 protein located near the mRNA entry channel. Biochimie 2018;158:117-125. [PMID: 30594661 DOI: 10.1016/j.biochi.2018.12.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 12/25/2018] [Indexed: 12/12/2022]
5
Wang X, Feng M, Xiao L, Tong A, Xiang Y. Postsynthetic Modification of DNA Phosphodiester Backbone for Photocaged DNAzyme. ACS Chem Biol 2016;11:444-51. [PMID: 26669486 DOI: 10.1021/acschembio.5b00867] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
6
Malygin AA, Graifer DM, Meschaninova MI, Venyaminova AG, Krumkacheva OA, Fedin MV, Karpova GG, Bagryanskaya EG. Doubly Spin-Labeled RNA as an EPR Reporter for Studying Multicomponent Supramolecular Assemblies. Biophys J 2015;109:2637-2643. [PMID: 26682820 PMCID: PMC4699879 DOI: 10.1016/j.bpj.2015.10.042] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 10/21/2015] [Accepted: 10/30/2015] [Indexed: 02/06/2023]  Open
7
Sharifulin DE, Grosheva AS, Bartuli YS, Malygin AA, Meschaninova MI, Ven'yaminova AG, Stahl J, Graifer DM, Karpova GG. Molecular contacts of ribose-phosphate backbone of mRNA with human ribosome. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2015;1849:930-9. [PMID: 26066980 DOI: 10.1016/j.bbagrm.2015.06.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Revised: 06/02/2015] [Accepted: 06/04/2015] [Indexed: 02/05/2023]
8
Babaylova ES, Ivanov AV, Malygin AA, Vorobjeva MA, Venyaminova AG, Polienko YF, Kirilyuk IA, Krumkacheva OA, Fedin MV, Karpova GG, Bagryanskaya EG. A versatile approach for site-directed spin labeling and structural EPR studies of RNAs. Org Biomol Chem 2015;12:3129-36. [PMID: 24714823 DOI: 10.1039/c3ob42154f] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
9
Graifer D, Karpova G. Interaction of tRNA with eukaryotic ribosome. Int J Mol Sci 2015;16:7173-94. [PMID: 25830484 PMCID: PMC4425011 DOI: 10.3390/ijms16047173] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Revised: 03/20/2015] [Accepted: 03/23/2015] [Indexed: 11/16/2022]  Open
10
Hwang K, Wu P, Kim T, Lei L, Tian S, Wang Y, Lu Y. Photocaged DNAzymes as a general method for sensing metal ions in living cells. Angew Chem Int Ed Engl 2014;53:13798-802. [PMID: 25314680 PMCID: PMC4297208 DOI: 10.1002/anie.201408333] [Citation(s) in RCA: 158] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Indexed: 12/29/2022]
11
Hwang K, Wu P, Kim T, Lei L, Tian S, Wang Y, Lu Y. Photocaged DNAzymes as a General Method for Sensing Metal Ions in Living Cells. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201408333] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
12
Graifer D, Karpova G. General approach for introduction of various chemical labels in specific RNA locations based on insertion of amino linkers. Molecules 2013;18:14455-69. [PMID: 24287984 PMCID: PMC6269657 DOI: 10.3390/molecules181214455] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2013] [Revised: 11/12/2013] [Accepted: 11/18/2013] [Indexed: 01/06/2023]  Open
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