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Metal Coordination Enhances Chalcogen Bonds: CSD Survey and Theoretical Calculations. Int J Mol Sci 2022; 23:ijms23084188. [PMID: 35457005 PMCID: PMC9030556 DOI: 10.3390/ijms23084188] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 04/02/2022] [Accepted: 04/07/2022] [Indexed: 12/03/2022] Open
Abstract
In this study the ability of metal coordinated Chalcogen (Ch) atoms to undergo Chalcogen bonding (ChB) interactions has been evaluated at the PBE0-D3/def2-TZVP level of theory. An initial CSD (Cambridge Structural Database) inspection revealed the presence of square planar Pd/Pt coordination complexes where divalent Ch atoms (Se/Te) were used as ligands. Interestingly, the coordination to the metal center enhanced the σ-hole donor ability of the Ch atom, which participates in ChBs with neighboring units present in the X-ray crystal structure, therefore dictating the solid state architecture. The X-ray analyses were complemented with a computational study (PBE0-D3/def2-TZVP level of theory), which shed light into the strength and directionality of the ChBs studied herein. Owing to the new possibilities that metal coordination offers to enhance or modulate the σ-hole donor ability of Chs, we believe that the findings presented herein are of remarkable importance for supramolecular chemists as well as for those scientists working in the field of solid state chemistry.
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Parisi E, CARELLA A, Borbone F, Gentile FS, Centore R, Chiarella F. Effect of chalcogen bond on the packing and coordination geometry in hybrid organic-inorganic Cu(II) networks. CrystEngComm 2022. [DOI: 10.1039/d2ce00069e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The effect of chalcogen bond interaction led to interesting crystal packing and coordination geometry of Copper (II) in novel organic-inorganic hybrids. The reactions of organic bridging ligands, 1,2,5-benzothiadiazole (btd) and...
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Lee LM, Corless V, Luu H, He A, Jenkins H, Britten JF, Adam Pani F, Vargas-Baca I. Synthetic and structural investigations of bis(N-alkyl-benzoselenadiazolium) cations. Dalton Trans 2019; 48:12541-12548. [DOI: 10.1039/c9dt02311a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A variety of supramolecular structures is formed by selenadiazolium cations linked by hydrocarbon bridges.
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Affiliation(s)
- Lucia Myongwon Lee
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - Victoria Corless
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - Helen Luu
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - Allan He
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - Hilary Jenkins
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - James F. Britten
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - Faisal Adam Pani
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
| | - Ignacio Vargas-Baca
- McMaster University
- Department of Chemistry and Chemical Biology
- Hamilton
- Canada L8S 4 M1
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Rakitin OA, Zibarev AV. Synthesis and Applications of 5‐Membered Chalcogen‐Nitrogen π‐Heterocycles with Three Heteroatoms. ASIAN J ORG CHEM 2018. [DOI: 10.1002/ajoc.201800536] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Oleg A. Rakitin
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences 119991 Moscow Russia
- Nanotechnology Education and Research CenterSouth Ural State University 454080 Chelyabinsk Russia
| | - Andrey V. Zibarev
- N. N. Vorozhtsov Institute of Organic ChemistrySiberian Branch of Russian Academy of Sciences 630090 Novosibirsk Russia
- Department of ChemistryNational Research University – Tomsk State University 634050 Tomsk Russia
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7
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Chulanova EA, Semenov NA, Pushkarevsky NA, Gritsan NP, Zibarev AV. Charge-transfer chemistry of chalcogen–nitrogen π-heterocycles. MENDELEEV COMMUNICATIONS 2018. [DOI: 10.1016/j.mencom.2018.09.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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8
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Lee J, Lee LM, Arnott Z, Jenkins H, Britten JF, Vargas-Baca I. Sigma-hole interactions in the molecular and crystal structures of N-boryl benzo-2,1,3-selenadiazoles. NEW J CHEM 2018. [DOI: 10.1039/c8nj00553b] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Crystallography and DFT reveal competition between chalcogen bonding and other intermolecular interactions.
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Affiliation(s)
- Jiwon Lee
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton
- Canada
| | - Lucia Myongwon Lee
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton
- Canada
| | - Zachary Arnott
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton
- Canada
| | - Hilary Jenkins
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton
- Canada
| | - James F. Britten
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton
- Canada
| | - Ignacio Vargas-Baca
- Department of Chemistry and Chemical Biology
- McMaster University
- Hamilton
- Canada
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9
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Azhdari Tehrani A, Ghasempour H, Morsali A, Bauzá A, Frontera A, Retailleau P. Unraveling the dual character of sulfur atoms in a series of Hg(ii) coordination polymers containing bis(4-pyridyl)disulfide. CrystEngComm 2017. [DOI: 10.1039/c7ce00033b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Ho PC, Szydlowski P, Sinclair J, Elder PJW, Kübel J, Gendy C, Lee LM, Jenkins H, Britten JF, Morim DR, Vargas-Baca I. Supramolecular macrocycles reversibly assembled by Te(…)O chalcogen bonding. Nat Commun 2016; 7:11299. [PMID: 27090355 PMCID: PMC4838886 DOI: 10.1038/ncomms11299] [Citation(s) in RCA: 141] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2015] [Accepted: 03/11/2016] [Indexed: 12/25/2022] Open
Abstract
Organic molecules with heavy main-group elements frequently form supramolecular links to electron-rich centres. One particular case of such interactions is halogen bonding. Most studies of this phenomenon have been concerned with either dimers or infinitely extended structures (polymers and lattices) but well-defined cyclic structures remain elusive. Here we present oligomeric aggregates of heterocycles that are linked by chalcogen-centered interactions and behave as genuine macrocyclic species. The molecules of 3-methyl-5-phenyl-1,2-tellurazole 2-oxide assemble a variety of supramolecular aggregates that includes cyclic tetramers and hexamers, as well as a helical polymer. In all these aggregates, the building blocks are connected by Te(…)O-N bridges. Nuclear magnetic resonance spectroscopic experiments demonstrate that the two types of annular aggregates are persistent in solution. These self-assembled structures form coordination complexes with transition-metal ions, act as fullerene receptors and host small molecules in a crystal.
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Affiliation(s)
- Peter C Ho
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Patrick Szydlowski
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Jocelyn Sinclair
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Philip J W Elder
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Joachim Kübel
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Chris Gendy
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Lucia Myongwon Lee
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Hilary Jenkins
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - James F Britten
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Derek R Morim
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Ignacio Vargas-Baca
- Department of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
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Buvaylo EA, Kokozay VN, Vassilyeva OY, Skelton BW, Degtyarik MM, Korabik M, Jezierska J. Synthesis, structure, and characterizations of a new antiferromagnetic manganese(II) dichloro-bridged 1-D polymer decorated by 5-amino-1-H-tetrazole. J COORD CHEM 2015. [DOI: 10.1080/00958972.2015.1019874] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Elena A. Buvaylo
- Department of Chemistry, Taras Shevchenko National University of Kyiv, Kyiv, Ukraine
| | - Vladimir N. Kokozay
- Department of Chemistry, Taras Shevchenko National University of Kyiv, Kyiv, Ukraine
| | - Olga Yu. Vassilyeva
- Department of Chemistry, Taras Shevchenko National University of Kyiv, Kyiv, Ukraine
| | - Brian W. Skelton
- Centre for Microscopy, Characterisation and Analysis, University of Western Australia, Crawley, Australia
| | - Mikhail M. Degtyarik
- Research Institute for Physical Chemical Problems of Belarusian State University, Minsk, Belarus
| | - Maria Korabik
- Faculty of Chemistry, University of Wroclaw, Wroclaw, Poland
| | - Julia Jezierska
- Faculty of Chemistry, University of Wroclaw, Wroclaw, Poland
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