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Electron Attachment to 5-Fluorouracil: The Role of Hydrogen Fluoride in Dissociation Chemistry. Int J Mol Sci 2022; 23:ijms23158325. [PMID: 35955461 PMCID: PMC9369043 DOI: 10.3390/ijms23158325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 07/22/2022] [Accepted: 07/25/2022] [Indexed: 12/03/2022] Open
Abstract
We investigate dissociative electron attachment to 5-fluorouracil (5-FU) employing a crossed electron-molecular beam experiment and quantum chemical calculations. Upon the formation of the 5-FU- anion, 12 different fragmentation products are observed, the most probable dissociation channel being H loss. The parent anion, 5-FU-, is not stable on the experimental timescale (~140 µs), most probably due to the low electron affinity of FU; simple HF loss and F- formation are seen only with a rather weak abundance. The initial dynamics upon electron attachment seems to be governed by hydrogen atom pre-dissociation followed by either its full dissociation or roaming in the vicinity of the molecule, recombining eventually into the HF molecule. When the HF molecule is formed, the released energy might be used for various ring cleavage reactions. Our results show that higher yields of the fluorine anion are most probably prevented through both faster dissociation of an H atom and recombination of F- with a proton to form HF. Resonance calculations indicate that F- is formed upon shape as well as core-excited resonances.
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Pereira-da-Silva J, Mendes M, Kossoski F, Lozano AI, Rodrigues R, Jones NC, Hoffmann SV, Ferreira da Silva F. Perfluoro effect on the electronic excited states of para-benzoquinone revealed by experiment and theory. Phys Chem Chem Phys 2021; 23:2141-2153. [PMID: 33437976 DOI: 10.1039/d0cp05626j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a comprehensive study on the electronic excited states of tetrafluoro-1,4-benzoquinone, through high-resolution vacuum ultraviolet photoabsorption spectroscopy and time-dependent density functional theory calculations performed within the nuclear ensemble approach. Absolute cross section values were experimentally determined in the 3.8-10.8 eV energy range. The present experimental results represent the highest resolution data yet reported for this molecule and reveal previously unresolved spectral structures. The interpretation of the results was made in close comparison with the available data for para-benzoquinone [Jones et al., J. Chem. Phys., 2017, 146, 184303]. While the dominant absorption features for both molecules arise from analogous π* ← π transitions, some remarkable differences have been identified. The perfluoro effect manifests in different ways: shifts in band positions and cross sections, appearance of features associated with excitations to σCF* orbitals, and spectrum broadening by quenching of either vibrational or Rydberg progressions. The level of agreement between experiment and theory is very satisfactory, yet that required the inclusion of nuclear quantum effects in the calculations. We have also discussed the role of temperature on the absorption spectrum, as well as the involvement of core-excited resonances in promoting dissociative electron attachment reactions in the 3-5 eV range.
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Affiliation(s)
- J Pereira-da-Silva
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal.
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Khatymov RV, Shchukin PV, Muftakhov MV, Yakushchenko IK, Yarmolenko OV, Pankratyev EY. A unified statistical RRKM approach to the fragmentation and autoneutralization of metastable molecular negative ions of hexaazatrinaphthylenes. Phys Chem Chem Phys 2020; 22:3073-3088. [PMID: 31965122 DOI: 10.1039/c9cp05397b] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For the compounds promising for use as n-type semiconductors in organic electronics and energy storage devices, hexaazatrinaphthylene (HATNA) and its derivative hexamethoxy-hexaazatrinaphthylene (HMHATA), the monomolecular processes occurring under the exposure of molecules to low-energy (0-15 eV) free electrons were studied by means of resonant electron capture negative ion mass spectrometry. Resonant electron attachment results in the formation of eminently long-lived molecular negative ions (MNIs) in an abnormally wide range of incident electron energy (Ee) from 0 to 5-7 eV. For both compounds, this observation serves as an indication of the strong electron-accepting properties and high stability of MNIs against electron autodetachment. A weak yield of the only fragment NIs, dehydrogenated anions, was detected for HATNA at Ee > 6 eV. MNIs of HMHATA are less stable to dissociative decay because of the presence of weakly bound terminal substituents. This is evidenced by the mass spectral observation of intense fragmentation occurring above Ee≈ 1 eV and leading to a loss of up to 3 methyl groups as the Ee increases. A series of metastable NI peaks observed in the mass spectra testify to the delayed and sequential nature of fragmentation. Based on the principles of statistical Rice-Ramsperger-Kassel-Marcus (RRKM) theory, the theoretical model of dissociative decay of NIs was developed and then adopted to quantify the rates of ground-state anion decay via electron autodetachment. The experimentally measured electron autodetachment lifetimes and fragmentation rates were best reproduced by the model at molecular adiabatic electron affinities preset to 2.15 eV for HATNA and 1.88 eV for HMHATA, in reasonable agreement with the quantum chemical DFT PBE/3ζ predictions.
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Affiliation(s)
- Rustem V Khatymov
- Institute of Molecule and Crystal Physics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450075, Russia.
| | - Pavel V Shchukin
- Institute of Molecule and Crystal Physics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450075, Russia.
| | - Mars V Muftakhov
- Institute of Molecule and Crystal Physics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450075, Russia.
| | - Igor K Yakushchenko
- Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Moscow Region 142432, Russia
| | - Ol'ga V Yarmolenko
- Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Moscow Region 142432, Russia
| | - Evgeniy Yu Pankratyev
- Institute of Molecule and Crystal Physics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450075, Russia.
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Reactions in the Radiosensitizer Misonidazole Induced by Low-Energy (0-10 eV) Electrons. Int J Mol Sci 2019; 20:ijms20143496. [PMID: 31315268 PMCID: PMC6678818 DOI: 10.3390/ijms20143496] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 07/11/2019] [Accepted: 07/11/2019] [Indexed: 11/17/2022] Open
Abstract
Misonidazole (MISO) was considered as radiosensitizer for the treatment of hypoxic tumors. A prerequisite for entering a hypoxic cell is reduction of the drug, which may occur in the early physical-chemical stage of radiation damage. Here we study electron attachment to MISO and find that it very effectively captures low energy electrons to form the non-decomposed molecular anion. This associative attachment (AA) process is exclusively operative within a very narrow resonance right at threshold (zero electron energy). In addition, a variety of negatively charged fragments are observed in the electron energy range 0-10 eV arising from dissociative electron attachment (DEA) processes. The observed DEA reactions include single bond cleavages (formation of NO2-), multiple bond cleavages (excision of CN-) as well as complex reactions associated with rearrangement in the transitory anion and formation of new molecules (loss of a neutral H2O unit). While any of these AA and DEA processes represent a reduction of the MISO molecule, the radicals formed in the course of the DEA reactions may play an important role in the action of MISO as radiosensitizer inside the hypoxic cell. The present results may thus reveal details of the molecular description of the action of MISO in hypoxic cells.
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Khatymov RV, Muftakhov MV, Tuktarov RF, Raitman OA, Shokurov AV, Pankratyev EY. Fragmentation and slow autoneutralization of isolated negative molecular ions of phthalocyanine and tetraphenylporphyrin. J Chem Phys 2019; 150:134301. [PMID: 30954040 DOI: 10.1063/1.5087182] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Macrocyclic tetrapyrrolic compounds, such as naturally occurring or artificial porphyrins and phthalocyanines, have unique and highly attractive properties for applications in medicine and technology. The interaction of free-base phthalocyanine (H2Pc) and tetraphenylporphyrin (H2TPP) molecules with low-energy (0-15 eV) electrons was studied in vacuo by means of negative ion resonant electron capture mass spectrometry. Close similarities in formation and decay of negative ions of these compounds were revealed. Efficient formation of long-lived molecular negative ions (MNIs) was observed in the incident electron energy range of 0-8 eV, unprecedentedly wide for organic compounds and comparable to the range characteristic to carbon atomic clusters, fullerenes. Experiments testify to the strong persistence of MNIs of both compounds to dissociative decay, isomerization, and electron autodetachment. Lifetimes of MNIs as a function of incident electron energy were measured and it was concluded that the isolated anions may retain additional electrons in a time scale of up to hundreds of seconds at standard temperature due to the high adiabatic electron affinity of these large molecules. For the representatives of dyes and photochromic compounds comprehensively studied in terms of interaction with light, the present work highlights yet another unique property of these molecules, namely the capability to attach and durably retain an additional electron of low, pre-ionization energy.
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Affiliation(s)
- Rustem V Khatymov
- Institute of Molecule and Crystal Physics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IMCP UFRC RAS), Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - Mars V Muftakhov
- Institute of Molecule and Crystal Physics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IMCP UFRC RAS), Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - Renat F Tuktarov
- Institute of Molecule and Crystal Physics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IMCP UFRC RAS), Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - Oleg A Raitman
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry of the Russian Academy of Sciences (IPCE RAS), Leninsky prospect, 31k4, Moscow 199071, Russia
| | - Alexander V Shokurov
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry of the Russian Academy of Sciences (IPCE RAS), Leninsky prospect, 31k4, Moscow 199071, Russia
| | - Evgeniy Yu Pankratyev
- Institute of Molecule and Crystal Physics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IMCP UFRC RAS), Prospekt Oktyabrya 151, Ufa 450075, Russia
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da Costa RF, Ruivo JC, Kossoski F, Varella MTDN, Bettega MHF, Jones DB, Brunger MJ, Lima MAP. An ab initio investigation for elastic and electronically inelastic electron scattering from para-benzoquinone. J Chem Phys 2018; 149:174308. [DOI: 10.1063/1.5050622] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- R. F. da Costa
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-910 Vitória, Espírito Santo, Brazil
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - J. C. Ruivo
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - F. Kossoski
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - D. B. Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M. J. Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
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Jones DB, da Costa RF, Kossoski F, Varella MTDN, Bettega MHF, Ferreira da Silva F, Limão-Vieira P, García G, Lima MAP, White RD, Brunger MJ. Electron-impact electronic-state excitation of para-benzoquinone. J Chem Phys 2018; 148:124312. [DOI: 10.1063/1.5023494] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- D. B. Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - R. F. da Costa
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-910 Vitória, Espírito Santo, Brazil
| | - F. Kossoski
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, São Paulo, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - F. Ferreira da Silva
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - P. Limão-Vieira
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - G. García
- Instituto de Fisica Fundamental, CSIC, Serrano 113-bis, E-28006 Madrid, Spain
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - R. D. White
- College of Science and Engineering, James Cook University, Townsville, Australia
| | - M. J. Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
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Jones DB, Blanco F, García G, da Costa RF, Kossoski F, Varella MTDN, Bettega MHF, Lima MAP, White RD, Brunger MJ. Elastic scattering and vibrational excitation for electron impact onpara-benzoquinone. J Chem Phys 2017; 147:244304. [DOI: 10.1063/1.5010831] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- D. B. Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, South Australia 5001, Australia
| | - F. Blanco
- Departamento de Física Atómica, Molecular y Nuclear, Universidad Complutense de Madrid, Madrid E-28040, Spain
| | - G. García
- Instituto de Física Fundamental, CSIC, Serano 113-bis, E-28006 Madrid, Spain
| | - R. F. da Costa
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, Campinas, São Paulo 13083-859, Brazil
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-901 Vitória, Espírito Santo, Brazil
| | - F. Kossoski
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, Campinas, São Paulo 13083-859, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, São Paulo 05508-090, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, Curitiba, Paraná 81531-990, Brazil
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, Campinas, São Paulo 13083-859, Brazil
| | - R. D. White
- College of Science and Engineering, James Cook University, Townsville, Qld 4811, Australia
| | - M. J. Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, South Australia 5001, Australia
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Jones DB, Limão-Vieira P, Mendes M, Jones NC, Hoffmann SV, da Costa RF, Varella MTDN, Bettega MHF, Blanco F, García G, Ingólfsson O, Lima MAP, Brunger MJ. An experimental and theoretical investigation into the electronically excited states of para-benzoquinone. J Chem Phys 2017. [DOI: 10.1063/1.4982940] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- D. B. Jones
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - P. Limão-Vieira
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - M. Mendes
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - N. C. Jones
- ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade, DK-8000 Aarhus C, Denmark
| | - S. V. Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade, DK-8000 Aarhus C, Denmark
| | - R. F. da Costa
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-910 Vitória, Espírito Santo, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, São Paulo, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - F. Blanco
- Departamento de Física Atómica, Molecular y Nuclear, Universidad Complutense de Madrid, Madrid E-28040, Spain
| | - G. García
- Instituto de Fisica Fundamental, CSIC, Serrano 113-Bis, 28006 Madrid, Spain
| | - O. Ingólfsson
- Science Institute and Department of Chemistry, University of Iceland, Dunhagi 3, 107 Reykjavík, Iceland
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin,” Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. J. Brunger
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
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Brunger MJ. Electron scattering and transport in biofuels, biomolecules and biomass fragments. INT REV PHYS CHEM 2017. [DOI: 10.1080/0144235x.2017.1301030] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Thorman RM, Brannaka JA, McElwee-White L, Ingólfsson O. Low energy electron-induced decomposition of (η3-C3H5)Ru(CO)3Br, a potential focused electron beam induced deposition precursor with a heteroleptic ligand set. Phys Chem Chem Phys 2017; 19:13264-13271. [DOI: 10.1039/c7cp01696d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Low energy electron induced fragmentation of (η3-C3H5)Ru(CO)3Br is reported in relation to the suitability of different ligands in the design of focused electron beam induced deposition precursors.
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Affiliation(s)
- Rachel M. Thorman
- Science Institute and Department of Chemistry
- University of Iceland
- Reykjavik
- Iceland
| | | | | | - Oddur Ingólfsson
- Science Institute and Department of Chemistry
- University of Iceland
- Reykjavik
- Iceland
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Jones DB, Ali E, Ning CG, Colgan J, Ingólfsson O, Madison DH, Brunger MJ. Electron impact ionization dynamics of para-benzoquinone. J Chem Phys 2016; 145:164306. [DOI: 10.1063/1.4965919] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Affiliation(s)
- D. B. Jones
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide SA 5001, Australia
| | - E. Ali
- Department of Physics, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
| | - C. G. Ning
- Department of Physics, State Key Laboratory of Low-Dimensional Quantum Physics, Tsinghua University, Beijing 100084, China
| | - J. Colgan
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - O. Ingólfsson
- Science Institute and Department of Chemistry, University of Iceland, Dunhagi 3, 107 Reykjavík, Iceland
| | - D. H. Madison
- Department of Physics, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
| | - M. J. Brunger
- School of Chemical and Physical Sciences, Flinders University, GPO Box 2100, Adelaide SA 5001, Australia
- Institute of Mathematical Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia
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Ómarsson B, Engmann S, Ingólfsson O. Dissociative electron attachment to the complexation ligands hexafluoroacetylacetone, trifluoroacetylacetone and acetylacetone; a comparative experimental and theoretical study. RSC Adv 2014. [DOI: 10.1039/c4ra04451g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Influence of fluorination on the negative ion resonances and dissociation dynamics in electron attachment to acetylacetone, trifluoroacetylacetone and hexafluoroacetylacetone are explored through calculations and experiments.
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