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Halder P, Prerna, Singh JK. Building Unit Extractor for Metal-Organic Frameworks. J Chem Inf Model 2021; 61:5827-5840. [PMID: 34793154 DOI: 10.1021/acs.jcim.1c00547] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Metal-organic frameworks (MOFs) have relevance in extensive applications such as gas adsorption, separation, and energy storage. The tunability demonstrated by MOFs has encouraged research on MOF database generation via distinct methodologies. One of the crucial stages of these procedures is pre-processing, which often includes extraction of the building units (BUs). The process of BU extraction is intricate, and it is further amplified with the presence of solvent molecules/ions in the structure. This work presents MOF BU developer (mBUD), a platform to deconstruct the BUs, such as metal nodes, organic linkers, and functional groups of the MOF structure. The deconstruction algorithm has been assessed on the MOF structures of the CoRE MOF 2019 database. A total of 2,580 BUs have been extracted and provided as a database. This platform has been utilized to create a ready-to-use database of unique BUs deconstructed from the CoRE MOF database. We have also provided the web version of mBUD that can be easily used to extract BUs. These BUs can be employed to develop hypothetical MOF structures. It is envisaged that the BU database built with the deconstruction platform will aid the design of novel application-specific MOFs.
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Affiliation(s)
- Prosun Halder
- Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Prerna
- Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Jayant K Singh
- Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur 208016, India.,Prescience Insilico Private Limited, Old Madras Road, Bangalore 560049, India
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2
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Hawes CS. Coordination sphere hydrogen bonding as a structural element in metal-organic Frameworks. Dalton Trans 2021; 50:6034-6049. [PMID: 33973587 DOI: 10.1039/d1dt00675d] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the design of new metal-organic frameworks, the constant challenges of framework stability and structural predictability continue to influence ligand choice in favour of well-studied dicarboxylates and similar ligands. However, a small subset of known MOF ligands contains suitable functionality for coordination sphere hydrogen bonding which can provide new opportunities in ligand design. Such interactions may serve to support and rigidity the coordination geometry of mononuclear coordination spheres, as well as providing extra thermodynamic and kinetic stabilisation to meet the challenge of hydrolytic stability in these materials. In this perspective, a collection of pyrazole, amine, amide and carboxylic acid containing species are examined through the lens of (primarily) inner-sphere hydrogen bonding. The influence of these interactions is then related to the overall structure, stability and function of these materials, to provide starting points for harnessing these interactions in future materials design.
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Affiliation(s)
- Chris S Hawes
- School of Chemical and Physical Sciences, Keele University, Keele ST5 5BG, UK.
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3
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Lifa S, Trifa C, Bouacida S, Boudaren C, Merazig H. Alkali and alkaline earth coordination polymers constructed from benzene-1,2,4,5-tetracarboxylic acid and flexible dicarboxylate acid ligands: syntheses, structures and spectroscopic and thermal properties. Acta Crystallogr C Struct Chem 2021; 77:90-99. [PMID: 33536372 DOI: 10.1107/s2053229621000085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2020] [Accepted: 01/04/2021] [Indexed: 01/18/2023] Open
Abstract
Two new metal coordination complexes, namely, poly[aqua(μ6-benzene-1,2,4,5-tetracarboxylic acid-κ8O1:O1,O2:O2':O4:O4,O5:O5')(μ-but-2-enedioato-κ2O1:O4)potassium(I)], [K2(C4H2O4)(C10H6O8)(H2O)2]n or [K2(fum)(H4btec)(H2O)2]n, (1), and poly[aqua(μ8-2,5-dicarboxybenzene-1,4-dicarboxylato-κ12O1:O1',O2:O2,O2':O2':O4:O4',O5:O5,O5':O5')(μ-ethanedioato-κ4O1,O2:O1',O2')strontium(II)], [Sr2(C2O4)(C10H4O8)(H2O)2]n or [Sr2(ox)(H2btec)(H2O)2]n, (2) (H4btec = benzene-1,2,4,5-tetracarboxylic acid, H2btec = 2,5-dicarboxybenzene-1,4-dicarboxylate, fum = fumarate and ox = oxalate), have been obtained under hydrothermal conditions by reacting the different alkali and alkaline earth metal salts with H4btec, fumaric acid (H2fum) and oxalic acid (H2ox). Complexes (1) and (2) were structurally characterized by single-crystal X-ray diffraction, IR and UV-Vis spectroscopy, powder X-ray diffraction (PXRD) and thermogravimetic analysis-differential scanning calorimetry (TGA-DSC). Complex (1) displays a two-dimensional (2D) layer with the K+ ion in a distorted pentagonal bipyramidal geometry and exhibits a uninodal 6-connected hxl/Shubnikov plane net (3,6) with {36.46.53} topology. Complex (2) displays a three-dimensional (3D) network structure, in which the Sr2+ ion is in a distorted monocapped square antiprism geometry. The framework possess a binodal (5,8)-connected net with the Schläfli symbol {32.410.58.64.74}{32.46.52}2. The 3D Hirshfeld surfaces and 2D fingerprint plots show that the main interactions are the O...H/H...O intermolecular interactions. Moreover, the thermal decompositions of (1) and (2) in the temperature range 303-1273 K revealed that they both decompose in three steps and transform to the corresponding metal oxide.
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Affiliation(s)
- Said Lifa
- Unité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (CHEMS), Université des frères Mentouri Constantine 1, 25000, Algeria
| | - Chahrazed Trifa
- Unité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (CHEMS), Université des frères Mentouri Constantine 1, 25000, Algeria
| | - Sofiane Bouacida
- Unité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (CHEMS), Université des frères Mentouri Constantine 1, 25000, Algeria
| | - Chaouki Boudaren
- Unité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (CHEMS), Université des frères Mentouri Constantine 1, 25000, Algeria
| | - Hocine Merazig
- Unité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (CHEMS), Université des frères Mentouri Constantine 1, 25000, Algeria
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4
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Yao YE, Yang B, Wang L. A water stable Zn(II)-MOF for luminescent detection of Fe3+ ion and clinic nursing values on the anaphylactic shock by up-regulating the α receptor expression. JOURNAL OF POLYMER RESEARCH 2021. [DOI: 10.1007/s10965-020-02407-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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5
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Millan S, Makhloufi G, Janiak C. Metal-4,4′-azobis(3,5-dimethyl-1H-pyrazole) Complexes with Seven- and Nine-membered Hydrogen-bonded Rings Originating from the Pyrrolic NH Function. Z Anorg Allg Chem 2019. [DOI: 10.1002/zaac.201900052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Simon Millan
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
| | - Gamall Makhloufi
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
| | - Christoph Janiak
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
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6
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Millan S, Gil-Hernández B, Hastürk E, Schmitz A, Janiak C. A 2D Zinc Coordination Polymer Built from the Mono-deprotonated 4,4′-Azobis(3,5-dimethyl-1H-pyrazole) Ligand. Z Anorg Allg Chem 2018. [DOI: 10.1002/zaac.201800286] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Simon Millan
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
| | - Beatriz Gil-Hernández
- Departamento de Química; Facultad de Ciencias de La Laguna, Sección Química; Universidad de La Laguna; 38206 La Laguna Tenerife Spain
| | - Emrah Hastürk
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
| | - Alexa Schmitz
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
| | - Christoph Janiak
- Institut für Anorganische Chemie und Strukturchemie; Heinrich-Heine Universität Düsseldorf; 40204 Düsseldorf Germany
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7
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Kashani E, Noroozi Pesyan N, Rashidnejad H, Poursattar Marjani A, Yaghoobnejad Asl H. Synthesis and characterization of novel polymeric organic–inorganic complex framework based on sodium 2,4-dioxo-6-aryl-3-oxa-bicyclo[3.1.0]hexane-1,5-dicarboxylate (SDAOBDC) with three-dimensional hybrid networks. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2017. [DOI: 10.1007/s13738-017-1151-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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8
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Multiple-helix cobalt(II)-based metal-organic nanotubes on stainless steel fibers for solid-phase microextraction of chlorophenol and nitrophenols from water samples. Mikrochim Acta 2017. [DOI: 10.1007/s00604-017-2167-6] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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9
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Abstract
Nature makes use of tubular structures for the spatial separation of matter on many different length scales, ranging from the nanometer scale (selective channels based on folded proteins) up to the centimeter scale (blood vessels). Today, polymer chemists and engineers can prepare polymeric tubular structures via a variety of different methods also covering many lengthscales, from nanometers to meters. The synthetic approaches described in this chapter vary significantly from the folding of single polymer chains via the self-assembly of DNA fragments to coordinative metal-organic nanotubes to tubes engineerd from bulk polymers using a range of porous or fibrous templates. While all examples reported in this chapter form tubular structures and thereby mimic their naturally occuring counterparts, it is mainly the engineered tubes that are more straightforward to prepare that also show some bio-inspired function.
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Affiliation(s)
- Samantha Doninelli
- Department of Chemistry, University of Fribourg Chemin du Musée 9 CH-1700 Fribourg Switzerland
| | - Michael Badoux
- Department of Chemistry, University of Fribourg Chemin du Musée 9 CH-1700 Fribourg Switzerland
| | - Andreas F. M. Kilbinger
- Department of Chemistry, University of Fribourg Chemin du Musée 9 CH-1700 Fribourg Switzerland
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10
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Liu XJ, Zhang YH, Chang Z, Li AL, Tian D, Yao ZQ, Jia YY, Bu XH. A Water-Stable Metal–Organic Framework with a Double-Helical Structure for Fluorescent Sensing. Inorg Chem 2016; 55:7326-8. [DOI: 10.1021/acs.inorgchem.6b00935] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Xiao-Jing Liu
- School of Materials Science and Engineering, TKL of Metal- and Molecule-Based
Material Chemistry and Collaborative Innovation Center of Chemical
Science and Engineering (Tianjin), Nankai University, Tianjin 300350, China
| | - Ying-Hui Zhang
- School of Materials Science and Engineering, TKL of Metal- and Molecule-Based
Material Chemistry and Collaborative Innovation Center of Chemical
Science and Engineering (Tianjin), Nankai University, Tianjin 300350, China
| | - Ze Chang
- School of Materials Science and Engineering, TKL of Metal- and Molecule-Based
Material Chemistry and Collaborative Innovation Center of Chemical
Science and Engineering (Tianjin), Nankai University, Tianjin 300350, China
| | - Ai-Lin Li
- School of Materials Science and Engineering, TKL of Metal- and Molecule-Based
Material Chemistry and Collaborative Innovation Center of Chemical
Science and Engineering (Tianjin), Nankai University, Tianjin 300350, China
| | - Dan Tian
- Department of Chemistry, Nankai University, Tianjin 300071, China
| | - Zhao-Quan Yao
- School of Materials Science and Engineering, TKL of Metal- and Molecule-Based
Material Chemistry and Collaborative Innovation Center of Chemical
Science and Engineering (Tianjin), Nankai University, Tianjin 300350, China
| | - Yan-Yuan Jia
- Department of Chemistry, Nankai University, Tianjin 300071, China
| | - Xian-He Bu
- School of Materials Science and Engineering, TKL of Metal- and Molecule-Based
Material Chemistry and Collaborative Innovation Center of Chemical
Science and Engineering (Tianjin), Nankai University, Tianjin 300350, China
- Department of Chemistry, Nankai University, Tianjin 300071, China
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11
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Magnetic metal-organic nanotubes: An adsorbent for magnetic solid-phase extraction of polychlorinated biphenyls from environmental and biological samples. J Chromatogr A 2016; 1449:39-47. [DOI: 10.1016/j.chroma.2016.04.060] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Revised: 04/19/2016] [Accepted: 04/20/2016] [Indexed: 12/27/2022]
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12
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Qian J, Yu P, Huang S. A microporous europium–organic framework anchored with open –COOH groups for selective cation sensing. CrystEngComm 2016. [DOI: 10.1039/c6ce01801g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Wen Y, Sheng T, Xue Z, Wang Y, Zhuo C, Zhu X, Hu S, Wu X. From Pair Quadruple- to Single-Stranded Helices to Lines in a Mixed Ligand System via Adjusting the N-Substituent of l-Glu. Inorg Chem 2015; 54:3951-7. [DOI: 10.1021/acs.inorgchem.5b00130] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Yuehong Wen
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Tianlu Sheng
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Zhenzhen Xue
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Yong Wang
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Chao Zhuo
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Xiaoquan Zhu
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Shengmin Hu
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
| | - Xintao Wu
- State Key Laboratory of Structure
Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002, China
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14
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Ouellette W, Gooch J, Luquis S, Zubieta J. Anion influences on the solid state coordination chemistry of copper–bispyrazole materials. Inorganica Chim Acta 2015. [DOI: 10.1016/j.ica.2014.12.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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15
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Lun HJ, Cui SS, Li HJ, Ping Q, Song HH, Li YM, Ru Y, Bai YL, Xiang SC. A chiral coordination polymer with double coaxially nested helical chains exhibiting spin-canting antiferromagnetism. CrystEngComm 2015. [DOI: 10.1039/c5ce01378j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A chiral coordination polymer is reported, which contains rarely two types of double coaxially nested helical chains, exhibiting spin-canting antiferromagnetism.
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Affiliation(s)
- Hui-Jie Lun
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Sa-Sa Cui
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Hai-Jiao Li
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Qi Ping
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Hao-Han Song
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Ya-Min Li
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Yu Ru
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Yan-Long Bai
- Henan Key Laboratory of Polyoxometalate
- Institute of Molecular and Crystal Engineering
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng, China
| | - Sheng-Chang Xiang
- Fujian Provincial Key Laboratory of Polymer Materials
- College of Chemistry and Chemical Engineering
- Fujian Normal University
- Fuzhou, China
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16
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Wang JH, Tang GM, Qin TX, Yan SC, Wang YT, Cui YZ, Weng Ng S. A set of alkali and alkaline-earth coordination polymers based on the ligand 2-(1H-benzotriazol-1-yl) acetic acid: Effects the radius of metal ions on structures and properties. J SOLID STATE CHEM 2014. [DOI: 10.1016/j.jssc.2014.07.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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17
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Qin J, Jia Y, Li H, Zhao B, Wu D, Zang S, Hou H, Fan Y. Conversion from a Heterochiral [2 + 2] Coaxially Nested Double-Helical Column to a Cationic Spiral Staircase Stimulated by an Ionic Liquid Anion. Inorg Chem 2014; 53:685-7. [DOI: 10.1021/ic402598p] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Jianhua Qin
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
- College
of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471022, China
| | - Yanyuan Jia
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
- Department
of Chemistry, Nankai University, Tianjin 300071, China
| | - Huijun Li
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
| | - Bei Zhao
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
| | - Dongqing Wu
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
| | - Shuangquan Zang
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
| | - Hongwei Hou
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
| | - Yaoting Fan
- College
of Chemistry and Molecular Engineering, Zhengzhou University, Henan 450052, China
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18
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Xu B, Liang QS, Liu LT, Liu QS, Li CC. Structures and properties of four coordination polymers constructed from 1,3-bis-(4-pyridyl)-propane and aromatic dicarboxylic acids. RSC Adv 2014. [DOI: 10.1039/c4ra00163j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
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19
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Wu XL, Luo F, Sun GM, Zheng AM, Zhang J, Luo MB, Xu WY, Zhu Y, Zhang XM, Huang SY. Optimization of Reaction Conditions towards Multiple Types of Framework Isomers and Periodic-Increased Porosity: Luminescence Properties and Selective CO2Adsorption over N2. Chemphyschem 2013; 14:3594-9. [DOI: 10.1002/cphc.201300564] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2013] [Indexed: 11/06/2022]
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20
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Cheng PC, Kuo PT, Xie MY, Hsu W, Chen JD. Structure-directing roles of auxiliary polycarboxylate ligands in the formation of Zn(ii) and Cd(ii) coordination polymers based on a flexible N,N′-di(3-pyridyl)dodecanediamide. CrystEngComm 2013. [DOI: 10.1039/c3ce40785c] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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