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Liu Y, Sanchez DM, Ware MR, Champenois EG, Yang J, Nunes JPF, Attar A, Centurion M, Cryan JP, Forbes R, Hegazy K, Hoffmann MC, Ji F, Lin MF, Luo D, Saha SK, Shen X, Wang XJ, Martínez TJ, Wolf TJA. Rehybridization dynamics into the pericyclic minimum of an electrocyclic reaction imaged in real-time. Nat Commun 2023; 14:2795. [PMID: 37202402 DOI: 10.1038/s41467-023-38513-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 04/28/2023] [Indexed: 05/20/2023] Open
Abstract
Electrocyclic reactions are characterized by the concerted formation and cleavage of both σ and π bonds through a cyclic structure. This structure is known as a pericyclic transition state for thermal reactions and a pericyclic minimum in the excited state for photochemical reactions. However, the structure of the pericyclic geometry has yet to be observed experimentally. We use a combination of ultrafast electron diffraction and excited state wavepacket simulations to image structural dynamics through the pericyclic minimum of a photochemical electrocyclic ring-opening reaction in the molecule α-terpinene. The structural motion into the pericyclic minimum is dominated by rehybridization of two carbon atoms, which is required for the transformation from two to three conjugated π bonds. The σ bond dissociation largely happens after internal conversion from the pericyclic minimum to the electronic ground state. These findings may be transferrable to electrocyclic reactions in general.
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Affiliation(s)
- Y Liu
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY, 11790, USA
| | - D M Sanchez
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, CA, 94305, USA
- Design Physics Division, Lawrence Livermore National Laboratory, Livermore, CA, USA
| | - M R Ware
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - E G Champenois
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - J Yang
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
- Center of Basic Molecular Science, Department of Chemistry, Mong Man Wai Building of Science and Technology, S-1027 Tsinghua University, Beijing, China
| | - J P F Nunes
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Theodore Jorgensen Hall 208, 855 N 16th Street, Lincoln, NE, 68588, USA
- Diamond Light Source, Harwell Science Campus, Fermi Ave, Didcot, OX11 0DE, UK
| | - A Attar
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - M Centurion
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Theodore Jorgensen Hall 208, 855 N 16th Street, Lincoln, NE, 68588, USA
| | - J P Cryan
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - R Forbes
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - K Hegazy
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - M C Hoffmann
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - F Ji
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - M-F Lin
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - D Luo
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - S K Saha
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Theodore Jorgensen Hall 208, 855 N 16th Street, Lincoln, NE, 68588, USA
| | - X Shen
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - X J Wang
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA
| | - T J Martínez
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, CA, 94305, USA.
| | - T J A Wolf
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
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A Narrative Review on the Bioactivity and Health Benefits of Alpha-Phellandrene. Sci Pharm 2022. [DOI: 10.3390/scipharm90040057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Aromatic essential oils play a significant role in pharmaceuticals, food additives, cosmetics, and perfumery. Essential oils mostly comprise aliphatic hydrocarbons, monoterpenoids, sesquiterpenoids and diterpenes. Plant extracts comprise a complex mixture of terpenes, terpenoids, aliphatic and phenol-derived aromatic components. Terpenes are a significant class of hydrocarbons with numerous health benefits. These biological functions of essential oil components are examined in vitro and in vivo studies. Some studies evaluated the properties and functions of α-phellandrene (α-PHE). Detailed evaluation to determine the functions of α-PHE over a spectrum of health care domains needs to be initiated. Its possible mechanism of action in a biological system could reveal the future opportunities and challenges in using α-PHE as a pharmaceutical candidate. The biological functions of α-PHE are reported, including anti-microbial, insecticidal, anti-inflammatory, anti-cancer, wound healing, analgesic, and neuronal responses. The present narrative review summarizes the synthesis, biotransformation, atmospheric emission, properties, and biological activities of α-PHE. The literature review suggests that extended pre-clinical studies are necessary to develop α-PHE-based adjuvant therapeutic approaches.
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Champenois EG, Sanchez DM, Yang J, Figueira Nunes JP, Attar A, Centurion M, Forbes R, Gühr M, Hegazy K, Ji F, Saha SK, Liu Y, Lin MF, Luo D, Moore B, Shen X, Ware MR, Wang XJ, Martínez TJ, Wolf TJA. Conformer-specific photochemistry imaged in real space and time. Science 2021; 374:178-182. [PMID: 34618569 DOI: 10.1126/science.abk3132] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
[Figure: see text].
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Affiliation(s)
- E G Champenois
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - D M Sanchez
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.,Department of Chemistry, Stanford University, Stanford, CA, USA
| | - J Yang
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.,SLAC National Accelerator Laboratory, Menlo Park, CA, USA.,Center of Basic Molecular Science, Department of Chemistry, Tsinghua University, Beijing, China
| | - J P Figueira Nunes
- Department of Physics and Astronomy, University of Nebraska, Lincoln, NE, USA
| | - A Attar
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - M Centurion
- Department of Physics and Astronomy, University of Nebraska, Lincoln, NE, USA
| | - R Forbes
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - M Gühr
- Institut für Physik und Astronomie, Universität Potsdam, Potsdam, Germany
| | - K Hegazy
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.,Department of Physics, Stanford University, Stanford, CA, USA
| | - F Ji
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - S K Saha
- Department of Physics and Astronomy, University of Nebraska, Lincoln, NE, USA
| | - Y Liu
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY, USA
| | - M-F Lin
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - D Luo
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - B Moore
- Department of Physics and Astronomy, University of Nebraska, Lincoln, NE, USA
| | - X Shen
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - M R Ware
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - X J Wang
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - T J Martínez
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.,Department of Chemistry, Stanford University, Stanford, CA, USA
| | - T J A Wolf
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
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Sofferman DL, Konar A, Mastron JN, Spears KG, Cisneros C, Smith AC, Tapavicza E, Sension RJ. Probing the Formation and Conformational Relaxation of Previtamin D 3 and Analogues in Solution and in Lipid Bilayers. J Phys Chem B 2021; 125:10085-10096. [PMID: 34473504 DOI: 10.1021/acs.jpcb.1c04376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The photosynthesis of vitamin D3 in mammalian skin results from UV-B irradiation of provitamin D3 (7-dehydrocholesterol, DHC) at ca. 290 nm. Upon return to the ground state, the hexatriene product, previtamin D3, undergoes a conformational equilibration between helical gZg and more planar tZg and tZt forms. The helical gZg forms provide a pathway for the formation of vitamin D3 via a [1,7]-sigmatropic hydrogen shift. Steady state photolysis and UV transient absorption spectroscopy are combined to explore the conformational relaxation of previtamin D3 formed from DHC in isotropic solution and confined to lipid bilayers chosen to model the biological cell membrane. The results are compared with measurements for two analogues: previtamin D2 formed from ergosterol (provitamin D2) and previtamin D3 acetate formed from DHC acetate. The resulting spectral dynamics are interpreted in the context of simulations of optical excitation energy and oscillator strength as a function of conformation. In solution, the relaxation dynamics and steady state product distributions of the three compounds are nearly identical, favoring tZg forms. When confined to lipid bilayers, the heterogeneity and packing forces alter the conformational distributions and enhance the population of a gZg conformer capable of vitamin D formation.
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Affiliation(s)
- Danielle L Sofferman
- Program in Applied Physics, University of Michigan, 450 Church Street, Ann Arbor, Michigan 48109-1040, United States
| | - Arkaprabha Konar
- Department of Physics, University of Michigan, 450 Church Street, Ann Arbor, Michigan 48109-1040, United States
| | - Joseph N Mastron
- Department of Physics, University of Michigan, 450 Church Street, Ann Arbor, Michigan 48109-1040, United States.,Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, Michigan 48109-1055, United States
| | - Kenneth G Spears
- Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, Michigan 48109-1055, United States
| | - Cecilia Cisneros
- Department of Chemistry and Biochemistry, California State University, Long Beach, 1250 Bellflower Boulevard, Long Beach, California 90840-9507, United States
| | - Adam C Smith
- Department of Chemistry and Biochemistry, California State University, Long Beach, 1250 Bellflower Boulevard, Long Beach, California 90840-9507, United States
| | - Enrico Tapavicza
- Department of Chemistry and Biochemistry, California State University, Long Beach, 1250 Bellflower Boulevard, Long Beach, California 90840-9507, United States
| | - Roseanne J Sension
- Department of Physics, University of Michigan, 450 Church Street, Ann Arbor, Michigan 48109-1040, United States.,Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, Michigan 48109-1055, United States
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5
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Smith BD, Spears KG, Sension RJ. Probing the Biexponential Dynamics of Ring-Opening in 7-Dehydrocholesterol. J Phys Chem A 2016; 120:6575-81. [DOI: 10.1021/acs.jpca.6b06967] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Broc D. Smith
- Department of Chemistry and
Department of Physics, University of Michigan, 930 N. University Ave, Ann Arbor, Michigan 48109-1055, United States
| | - Kenneth G. Spears
- Department of Chemistry and
Department of Physics, University of Michigan, 930 N. University Ave, Ann Arbor, Michigan 48109-1055, United States
| | - Roseanne J. Sension
- Department of Chemistry and
Department of Physics, University of Michigan, 930 N. University Ave, Ann Arbor, Michigan 48109-1055, United States
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6
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Gao Y, Pemberton CC, Zhang Y, Weber PM. On the ultrafast photo-induced dynamics of α-terpinene. J Chem Phys 2016; 144:194303. [DOI: 10.1063/1.4948629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yan Gao
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | | | - Yao Zhang
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Peter M. Weber
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
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7
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Lei Y, Wu H, Zheng X, Zhai G, Zhu C. Photo-induced 1,3-cyclohexadiene ring opening reaction: Ab initio on-the-fly nonadiabatic molecular dynamics simulation. J Photochem Photobiol A Chem 2016. [DOI: 10.1016/j.jphotochem.2015.10.025] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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8
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Vazquez FX, Talapatra S, Sension RJ, Geva E. The Entropic Origin of Solvent Effects on the Single Bond cZt-tZt Isomerization Rate Constant of 1,3,5-cis-Hexatriene in Alkane and Alcohol Solvents: A Molecular Dynamics Study. J Phys Chem B 2014; 118:7869-77. [DOI: 10.1021/jp5002644] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Francisco X. Vazquez
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Surma Talapatra
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Roseanne J. Sension
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
| | - Eitan Geva
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, United States
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9
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Arruda BC, Sension RJ. Ultrafast polyene dynamics: the ring opening of 1,3-cyclohexadiene derivatives. Phys Chem Chem Phys 2014; 16:4439-55. [DOI: 10.1039/c3cp54767a] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Molesky BP, Moran AM. Fourth-Order Perturbative Model for Photoinduced Internal Conversion Processes. J Phys Chem A 2013; 117:13954-66. [DOI: 10.1021/jp4079162] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Brian P. Molesky
- Department
of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Andrew M. Moran
- Department
of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
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11
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Ashfold MNR. Photoinitiated quantum molecular dynamics: Concluding Remarks. Faraday Discuss 2013; 163:545-51. [DOI: 10.1039/c3fd00090g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Stolow A. The three pillars of photo-initiated quantum molecular dynamics. Faraday Discuss 2013; 163:9-32; discussion 117-38. [DOI: 10.1039/c3fd90021e] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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