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Number Cited by Other Article(s)
1
Oliveira SMD, Densmore D. Hardware, Software, and Wetware Codesign Environment for Synthetic Biology. BIODESIGN RESEARCH 2022;2022:9794510. [PMID: 37850136 PMCID: PMC10521664 DOI: 10.34133/2022/9794510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 08/10/2022] [Indexed: 10/19/2023]  Open
2
Becskei A, Rahaman S. The life and death of RNA across temperatures. Comput Struct Biotechnol J 2022;20:4325-4336. [PMID: 36051884 PMCID: PMC9411577 DOI: 10.1016/j.csbj.2022.08.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 08/04/2022] [Accepted: 08/04/2022] [Indexed: 11/05/2022]  Open
3
Ying H, Wang J, Shi T, Zhao Y, Ouyang P, Chen K. Engineering of lysine cyclodeaminase conformational dynamics for relieving substrate and product inhibitions in the biosynthesis of l-pipecolic acid. Catal Sci Technol 2019. [DOI: 10.1039/c8cy02301h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
4
Han SS, Kyeong HH, Choi JM, Sohn YK, Lee JH, Kim HS. Engineering of the Conformational Dynamics of an Enzyme for Relieving the Product Inhibition. ACS Catal 2016. [DOI: 10.1021/acscatal.6b02793] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
5
Oliveira SMD, Häkkinen A, Lloyd-Price J, Tran H, Kandavalli V, Ribeiro AS. Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements. PLoS Comput Biol 2016;12:e1005174. [PMID: 27792724 PMCID: PMC5085040 DOI: 10.1371/journal.pcbi.1005174] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Accepted: 09/23/2016] [Indexed: 11/19/2022]  Open
6
Woods ML, Leon M, Perez-Carrasco R, Barnes CP. A Statistical Approach Reveals Designs for the Most Robust Stochastic Gene Oscillators. ACS Synth Biol 2016;5:459-70. [PMID: 26835539 PMCID: PMC4914944 DOI: 10.1021/acssynbio.5b00179] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
7
Oliveira SMD, Chandraseelan JG, Häkkinen A, Goncalves NSM, Yli-Harja O, Startceva S, Ribeiro AS. Single-cell kinetics of a repressilator when implemented in a single-copy plasmid. MOLECULAR BIOSYSTEMS 2015;11:1939-45. [PMID: 25923804 DOI: 10.1039/c5mb00012b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
8
Potapov I, Zhurov B, Volkov E. Multi-stable dynamics of the non-adiabatic repressilator. J R Soc Interface 2015;12:20141315. [PMID: 25631570 PMCID: PMC4345497 DOI: 10.1098/rsif.2014.1315] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Accepted: 01/02/2015] [Indexed: 11/12/2022]  Open
9
Häkkinen A, Ribeiro AS. Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. Bioinformatics 2015;31:69-75. [PMID: 25189780 DOI: 10.1093/bioinformatics/btu592] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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