Systematic Parameterization and Simulation of Boronic Acid-β-Lactamase Aqueous Solution in Developing the ABEEMσπ Polarizable Force Field

Boronic acid, an inhibitor of β-lactamase, has begun to be applied to the treatment of biological infections and tumors. Scientists are working to develop new and more effective boronic acid. Molecular dynamics (MD) simulation provides a powerful auxiliary tool for drug design. However, the current force fields have no boron-related parameters. In this work, an atom-bond electronegativity equalization method at the σπ level (ABEEMσπ) polarizable force field (ABEEMσπ PFF) of boronic acid and β-lactamase has been developed to determine the potential functions and parameters. The interaction between boron and serine in β-lactamase is regarded as a bonded mode. The interaction between them is simulated by the Morse potential energy function, which is close to the experimental change of the stretching potential energy in a large range. The potential energy surfaces of the bond length, bond angle, and dihedral angle of boronic acid-β-lactamase have the same stability point and change trend as M06-2X/6-311G**. For 47 boronic acid-β-lactamase training molecules, the linear correlation coefficient (R) of the charge distribution between the ABEEMσπ PFF and HF/STO-3G is greater than 0.96. Attributed to the fact that the charge distribution of the ABEEMσπ PFF can fluctuate with the change of geometry and environment, the polarization effect and charge-transfer effect are well reflected. The binding ability of different boronic acids with the same β-lactamase is different. A total of 10 boronic acid-β-lactamase model molecules and 10 boronic acid-β-lactamase and water complexes are simulated. The order of binding energy of five large model molecules calculated by the ABEEMσπ PFF is consistent with that of the MP2 method. The binding energies of boronic acid-β-lactamase and water complexes are close to those of the MP2 method. The results of MD simulation of five aqueous boronic acid-β-lactamase complexes in the NVT ensemble verify the rationality of boron-related parameters of the ABEEMσπ PFF, which have a good application prospect. This study lays a solid theoretical foundation for further study of the inhibition of boronic acid on β-lactamase.

T-shaped monopyridazinotetrathiafulvalene-amino acid diad based chiral organogels with aggregation-induced fluorescence emission

A series of pyridazine coupled tetrathiafulvalene T-shaped derivatives with varying amino acid moieties have been synthesized and their gelation properties were studied in various organic solvents. Among these derivatives, two gelators bearing glycine or phenylalanine units display efficient gelation in aromatic and polar solvents. Interestingly, these gelators, except for the gelator containing two tryptophan units, are able to gel DMF via a solution-to-gel transformation when triggered with sonication for less than 20 s or cooled below zero. A number of experiments revealed that these gelator molecules self-assembled into elastically interpenetrating three-dimensional chiral fibrillar aggregates. Importantly, all of the resulting gels result in a dramatic enhancement of the fluorescence intensity compared with their hot solution in spite of the absence of a conventional fluorophore unit and the fluorescence was effectively quenched by the introduction of C60. Moreover, the gelators can be utilized for the removal of different types of toxic molecules, such as aromatic solvents and cationic dyes, from wastewater.

Gel properties of T-shaped tetrathiafulvalene–pyridazine conjugates and F4TCNQ-induced morphological transformation

T-shaped organic π-conjugates and their F₄TCNQ charge-transfer (CT) complexes are developed as LMOGs. The morphological changes of the organogels occur obviously due to the CT interaction.

Modulation of the charge transfer and photophysical properties in non-fused tetrathiafulvalene-benzothiadiazole derivatives

Stille and Sonogashira coupling strategies allowed the preparation of luminescent TTF-benzothiadiazole donor–acceptor compounds with direct linkage or an acetylenic spacer.

Polymorphism of Crystalline Molecular Donors for Solution-Processed Organic Photovoltaics

Using ab initio calculations and classical molecular dynamics simulations coupled to complementary experimental characterization, four molecular semiconductors were investigated in vacuum, solution, and crystalline form. Independently, the molecules can be described as nearly isostructural, yet in crystalline form, two distinct crystal systems are observed with characteristic molecular geometries. The minor structural variations provide a platform to investigate the subtlety of simple substitutions, with particular focus on polymorphism and rotational isomerism. Resolved crystal structures offer an exact description of intermolecular ordering in the solid state. This enables evaluation of molecular binding energy in various crystallographic configurations to fully rationalize observed crystal packing on a basis of first-principle calculations of intermolecular interactions.