1
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Zhang Y, Wu Y, Zhao Y, Zhang L, Zhang K. Versatile Bimolecular Ring-Closure Method for Cage-Shaped Polymers. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c00949] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuanxing Zhang
- Laboratory of Polymer Physics and Chemistry, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Wu
- Institute of Polymer Chemistry and Physics, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Yilin Zhao
- Laboratory of Polymer Physics and Chemistry, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- Institute of Polymer Chemistry and Physics, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Liangcai Zhang
- Laboratory of Polymer Physics and Chemistry, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ke Zhang
- Laboratory of Polymer Physics and Chemistry, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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2
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Tanaka K, Vong K. The Journey to In Vivo Synthetic Chemistry: From Azaelectrocyclization to Artificial Metalloenzymes. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2020. [DOI: 10.1246/bcsj.20200180] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Katsunori Tanaka
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8552, Japan
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
- Biofunctional Chemistry Laboratory, A. Butlerov Institute of Chemistry, Kazan Federal University, Kazan 420008, Russia
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Saitama 351-0198, Japan
| | - Kenward Vong
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Saitama 351-0198, Japan
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3
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Vong K, Yamamoto T, Tanaka K. Artificial Glycoproteins as a Scaffold for Targeted Drug Therapy. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e1906890. [PMID: 32068952 DOI: 10.1002/smll.201906890] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Revised: 12/24/2019] [Indexed: 06/10/2023]
Abstract
Akin to a cellular "fingerprint," the glycocalyx is a glycan-enriched cellular coating that plays a crucial role in mediating cell-to-cell interactions. To gain a better understanding of the factors that govern in vivo recognition, artificial glycoproteins were initially created to probe changes made to the accumulation and biodistribution of specific glycan assemblies through biomimicry. As a result, the organ-specific accumulation for a variety of glycoproteins decorated with simple and/or complex glycans was identified. Additionally, binding trends with regard to cancer cell selectivity were also investigated. To exploit the knowledge gained from these studies, numerous groups thus became engaged in developing targeted drug methodologies based on the use of artificial glycoproteins. This has either been done through adopting the glycoprotein scaffold as a drug carrier, or to directly glycosylate therapeutic proteins/enzymes to localize their biological activity. The principle aim of this Review is to present the foundational research that has driven artificial glycoprotein-based targeting and subsequent adaptations with potential therapeutic applications.
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Affiliation(s)
- Kenward Vong
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
| | - Tomoya Yamamoto
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
| | - Katsunori Tanaka
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
- Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 O-okayama, Meguro-ku, Tokyo, 152-8552, Japan
- Biofunctional Chemistry Laboratory, A. Butlerov Institute of Chemistry, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, 420008, Russian Federation
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
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4
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Vargas DF, Larghi EL, Kaufman TS. The 6π-azaelectrocyclization of azatrienes. Synthetic applications in natural products, bioactive heterocycles, and related fields. Nat Prod Rep 2019; 36:354-401. [PMID: 30090891 DOI: 10.1039/c8np00014j] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Covering: 2006 to 2018 The application of the 6π-azaelectrocyclization of azatrienes as a key strategy for the synthesis of natural products, their analogs and related bioactive or biomedically-relevant compounds (from 2006 to date) is comprehensively reviewed. Details about reaction optimization studies, relevant reaction mechanisms and conditions are also discussed.
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Affiliation(s)
- Didier F Vargas
- Instituto de Química Rosario (IQUIR, CONICET-UNR), Facultad de Ciencias Bioquímicas y Farmacéuticas - Universidad Nacional de Rosario, Suipacha 531, 2000 Rosario, Argentina.
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5
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Fukushima S, Ashizawa M, Kawauchi S, Michinobu T. Strain‐Promoted Double Azide Addition to Octadehydrodibenzo[12]annulene Derivatives. Helv Chim Acta 2019. [DOI: 10.1002/hlca.201900016] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Satomi Fukushima
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
| | - Minoru Ashizawa
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
| | - Susumu Kawauchi
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
| | - Tsuyoshi Michinobu
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
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6
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Yoshida S. Controlled Reactive Intermediates Enabling Facile Molecular Conjugation. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20180104] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Suguru Yoshida
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
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7
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2013-2014. MASS SPECTROMETRY REVIEWS 2018; 37:353-491. [PMID: 29687922 DOI: 10.1002/mas.21530] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 11/29/2016] [Indexed: 06/08/2023]
Abstract
This review is the eighth update of the original article published in 1999 on the application of Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2014. Topics covered in the first part of the review include general aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, fragmentation, and arrays. The second part of the review is devoted to applications to various structural types such as oligo- and poly- saccharides, glycoproteins, glycolipids, glycosides, and biopharmaceuticals. Much of this material is presented in tabular form. The third part of the review covers medical and industrial applications of the technique, studies of enzyme reactions, and applications to chemical synthesis. © 2018 Wiley Periodicals, Inc. Mass Spec Rev 37:353-491, 2018.
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Affiliation(s)
- David J Harvey
- Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, United Kingdom
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8
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Chen JQ, Xiang L, Liu X, Liu X, Zhang K. Self-Accelerating Click Reaction in Step Polymerization. Macromolecules 2017. [DOI: 10.1021/acs.macromol.7b01173] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Ji-Qiang Chen
- State
Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
| | - Lue Xiang
- State
Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of
Chinese Academy of Sciences, Beijing 100049, China
| | - Xianfeng Liu
- State
Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of
Chinese Academy of Sciences, Beijing 100049, China
| | - Xueping Liu
- State
Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of
Chinese Academy of Sciences, Beijing 100049, China
| | - Ke Zhang
- State
Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of
Chinese Academy of Sciences, Beijing 100049, China
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9
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Qu L, Sun P, Wu Y, Zhang K, Liu Z. Efficient Homodifunctional Bimolecular Ring-Closure Method for Cyclic Polymers by Combining RAFT and Self-Accelerating Click Reaction. Macromol Rapid Commun 2017; 38. [DOI: 10.1002/marc.201700121] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Revised: 04/12/2017] [Indexed: 01/20/2023]
Affiliation(s)
- Lin Qu
- Institute of Polymer Chemistry and Physics; Beijing Key Laboratory of Energy Conversion and Storage Materials; College of Chemistry; Beijing Normal University; Beijing 100875 China
| | - Peng Sun
- State Key Laboratory of Polymer Physics and Chemistry; Institute of Chemistry; The Chinese Academy of Sciences; Beijing 100190 China
| | - Ying Wu
- Institute of Polymer Chemistry and Physics; Beijing Key Laboratory of Energy Conversion and Storage Materials; College of Chemistry; Beijing Normal University; Beijing 100875 China
| | - Ke Zhang
- State Key Laboratory of Polymer Physics and Chemistry; Institute of Chemistry; The Chinese Academy of Sciences; Beijing 100190 China
| | - Zhengping Liu
- Institute of Polymer Chemistry and Physics; Beijing Key Laboratory of Energy Conversion and Storage Materials; College of Chemistry; Beijing Normal University; Beijing 100875 China
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10
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Affiliation(s)
- Peng Sun
- State Key Laboratory
of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jiqiang Chen
- State Key Laboratory
of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
| | - Jian’an Liu
- State Key Laboratory
of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
| | - Ke Zhang
- State Key Laboratory
of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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11
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Affiliation(s)
- Suguru Yoshida
- Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University
| | - Isao Kii
- RIKEN Center for Life Science Technologies
| | - Takamitsu Hosoya
- Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University
- RIKEN Center for Life Science Technologies
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12
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Tanaka K. Chemically synthesized glycoconjugates on proteins: effects of multivalency and glycoform in vivo. Org Biomol Chem 2016; 14:7610-21. [DOI: 10.1039/c6ob00788k] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The biodistributions and in vivo kinetics of chemically prepared glycoconjugates on proteins are reviewed.
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Affiliation(s)
- Katsunori Tanaka
- Biofunctional Synthetic Chemistry Laboratory
- RIKEN
- Wako-shi
- Japan
- Biofunctional Chemistry Laboratory
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13
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Ogura A, Tanaka K. Azaelectrocyclization on cell surface: convenient and general approach to chemical biology research. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.02.063] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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14
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Tuley A, Lee YJ, Wu B, Wang ZU, Liu WR. A genetically encoded aldehyde for rapid protein labelling. Chem Commun (Camb) 2015; 50:7424-6. [PMID: 24756176 DOI: 10.1039/c4cc02000f] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using a mutant pyrrolysyl-tRNA synthetase-tRNA(Pyl)(CUA) pair, 3-formyl-phenylalanine is genetically incorporated into proteins at amber mutation sites in Escherichia coli. This non-canonical amino acid readily reacts with hydroxylamine dyes, leading to rapid and site-selective protein labelling.
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Affiliation(s)
- Alfred Tuley
- Department of Chemistry, Texas A&M University, College Station, TX 77843, USA.
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15
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Xu F, Peng L, Shinohara K, Morita T, Yoshida S, Hosoya T, Orita A, Otera J. Substituted 5,6,11,12-Tetradehydrodibenzo[a,e]cyclooctenes: Syntheses, Properties, and DFT Studies of Substituted Sondheimer–Wong Diynes. J Org Chem 2014; 79:11592-608. [DOI: 10.1021/jo502248p] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Feng Xu
- Department
of Applied Chemistry, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Lifen Peng
- Department
of Applied Chemistry, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Kenta Shinohara
- Department
of Applied Chemistry, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Takamoto Morita
- Laboratory
of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
| | - Suguru Yoshida
- Laboratory
of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
| | - Takamitsu Hosoya
- Laboratory
of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
| | - Akihiro Orita
- Department
of Applied Chemistry, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Junzo Otera
- Department
of Applied Chemistry, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
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16
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Tanaka K, Kitadani M, Tsutsui A, Pradipta AR, Imamaki R, Kitazume S, Taniguchi N, Fukase K. A cascading reaction sequence involving ligand-directed azaelectrocyclization and autooxidation-induced fluorescence recovery enables visualization of target proteins on the surfaces of live cells. Org Biomol Chem 2014; 12:1412-8. [PMID: 24435553 DOI: 10.1039/c3ob42267d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A general probe designed to induce a cascading sequence of reactions on a target protein was efficiently synthesized. The cascading reaction sequence involved (i) ligand-directed azaelectrocyclization with lysine and (ii) the autooxidation-induced release of a fluorescence quencher from the labeled protein. The probe was linked to a cyclic RGDyK peptide to enable the selective visualization of integrin αVβ3 on the surfaces of live cells.
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Affiliation(s)
- Katsunori Tanaka
- Biofunctional Synthetic Chemistry Laboratory, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan.
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17
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In vivo kinetics and biodistribution analysis of neoglycoproteins: effects of chemically introduced glycans on proteins. Glycoconj J 2014; 31:273-9. [DOI: 10.1007/s10719-014-9520-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Revised: 03/12/2014] [Accepted: 03/17/2014] [Indexed: 12/15/2022]
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