A computational study of the glycylserine hydrolysis at physiological pH: a zwitterionic versus anionic mechanism

Heterogeneous nanozymatic activity of Hf oxo-clusters embedded in a metal-organic framework towards peptide bond hydrolysis

Materials with enzyme-like activities and proteolytic potential are emerging as a robust and effective alternative to natural enzymes. Herein, a Hf₆O₈-based NU-1000 metal organic framework (Hf-MOF) is shown to act as a heterogeneous catalyst for the hydrolysis of peptide bonds under mild conditions. In the presence of Hf-MOF, a glycylglycine model dipeptide was hydrolysed with a rate constant of k_obs = 8.33 × 10^-7 s^-1 (half-life (t_1/2) of 231 h) at 60 °C and pD 7.4, which is significantly faster than the uncatalyzed reaction. Other Gly-X peptides (X = Ser, Asp, Ile, Ala, and His) were also smoothly hydrolysed under the same conditions with similar rates, except for the faster reactions observed for Gly-His and Gly-Ser. Moreover, the Hf₆O₈-based NU-1000 MOF also exhibits a high selectivity in the cleavage of a protein substrate, hen egg white lysozyme (HEWL). Our results suggest that embedding Hf₆O₈ oxo-clusters is an efficient strategy to conserve the hydrolytic activity while smoothing the strong substrate adsorption previously observed for a discrete Hf oxo-cluster that hindered further development of its proteolytic potential. Furthermore, comparison with isostructural Zr-NU-1000 shows that although the Hf variant afforded the same cleavage pattern towards HEWL but slightly slower reaction rates, it exhibited a larger stability window and a better recyclability profile. The results suggest that these differences originate from the intrinsic differences between Hf^IV and Zr^IV centers, and from the lower surface area of Hf-NU-1000 in comparison to Zr-NU-1000.

Theoretical insight into the Au(i)-catalyzed hydration of halo-substituted propargyl acetate: dynamic water-assisted mechanism

Three possible hydration pathways, including 1,5-exo-dig cycloaddition, 1,6-endo-dig cycloaddition, and direct water attack, have been considered and investigated by using DFT method and the cluster-continuum solvent model.