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Liu YJ. Understanding the complete bioluminescence cycle from a multiscale computational perspective: A review. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C: PHOTOCHEMISTRY REVIEWS 2022. [DOI: 10.1016/j.jphotochemrev.2022.100537] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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2
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Zemmouche M, García-Iriepa C, Navizet I. Light emission colour modulation study of oxyluciferin synthetic analogues via QM and QM/MM approaches. Phys Chem Chem Phys 2020; 22:82-91. [DOI: 10.1039/c9cp04687a] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Study of emission spectra of three analogues of firefly oxyluciferin in gas phase, in water (PCM) and in protein.
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Affiliation(s)
- Madjid Zemmouche
- Université Paris-Est
- Laboratoire Modélisation et Simulation Multi Échelle
- MSME UMR 8208 CNRS
- UPEM
- 77454 Marne-la-Vallée
| | - Cristina García-Iriepa
- Université Paris-Est
- Laboratoire Modélisation et Simulation Multi Échelle
- MSME UMR 8208 CNRS
- UPEM
- 77454 Marne-la-Vallée
| | - Isabelle Navizet
- Université Paris-Est
- Laboratoire Modélisation et Simulation Multi Échelle
- MSME UMR 8208 CNRS
- UPEM
- 77454 Marne-la-Vallée
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3
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Noguchi Y, Hiyama M, Shiga M, Akiyama H, Sugino O. Photoabsorption Spectra of Aqueous Oxyluciferin Anions Elucidated by Explicit Quantum Solvent. J Chem Theory Comput 2019; 15:5474-5482. [DOI: 10.1021/acs.jctc.9b00392] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yoshifumi Noguchi
- Department of Applied Chemistry and Biochemical Engineering, Graduate School of Engineering, Shizuoka University, Johoku 3-5-1, Hamamatsu, Shizuoka 432-8561, Japan
| | - Miyabi Hiyama
- Graduate School of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan
| | - Motoyuki Shiga
- Center for Computational Science and E-Systems, Japan Atomic Energy Agency, 148-4 Kashiwanoha Campus, 178-4 Wakashiba, Kashiwa, Chiba 277-0871, Japan
| | - Hidefumi Akiyama
- Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Osamu Sugino
- Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
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4
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Cheng YY, Liu YJ. Theoretical Development of Near-Infrared Bioluminescent Systems. Chemistry 2018; 24:9340-9352. [PMID: 29710377 DOI: 10.1002/chem.201800416] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Indexed: 12/16/2022]
Abstract
The luciferin/luciferase system of the firefly has been used in bioluminescent imaging to monitor biological processes. In order to enhance the efficiency and expand the application range, some efforts have been made to tune the light emission, especially the effort to obtain NIR light. However, those case-by-case studies have not together revealed the nature and mechanism of the color tuning. In this paper, we theoretically investigated the fluorescence of all kinds of typical oxyluciferin analogues. The present systematical modifications of both oxyluciferin and luciferase indicate that the essential factor affecting the emission color is the charge distribution (or the electric dipole moment) on the oxyluciferin, which impacts on the charge transfer to form the light emitter and, subsequently, influence the strength and wavelength of the emission light. More negative charge distributed on the "thiazolone moiety" of the oxyluciferin or its analogues leads to a redshift. Based on this conclusion, we theoretically designed optimal pairs of luciferin analogue and luciferase for emitting NIR light, which could inspire new synthetic procedures and practical applications.
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Affiliation(s)
- Yuan-Yuan Cheng
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing, 100875, P. R. China
| | - Ya-Jun Liu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing, 100875, P. R. China
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5
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Zhou JG, Yang S, Deng ZY. Electrostatic Catalysis Induced by Luciferases in the Decomposition of the Firefly Dioxetanone and Its Analogue. J Phys Chem B 2017; 121:11053-11061. [DOI: 10.1021/acs.jpcb.7b08000] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Jian-Ge Zhou
- Department of Physics,
Atmospheric Science, and Geoscience, Jackson State University, Jackson, Mississippi 39217, United States
| | - Shan Yang
- Department of Physics,
Atmospheric Science, and Geoscience, Jackson State University, Jackson, Mississippi 39217, United States
| | - Zhen-Yan Deng
- Department of Physics, Shanghai University, Shanghai 200444, China
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6
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Noguchi Y, Hiyama M, Shiga M, Sugino O, Akiyama H. Reverse Stability of Oxyluciferin Isomers in Aqueous Solutions. J Phys Chem B 2016; 120:8776-83. [DOI: 10.1021/acs.jpcb.6b04963] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yoshifumi Noguchi
- Institute for
Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Miyabi Hiyama
- Institute for
Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Motoyuki Shiga
- Center for Computational
Science and E-Systems, Japan Atomic Energy Agency, 148-4 Kashiwanoha Campus, 178-4
Wakashiba, Kashiwa, Chiba 277-0871, Japan
| | - Osamu Sugino
- Institute for
Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Hidefumi Akiyama
- Institute for
Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
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7
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Magalhães CM, Esteves da Silva JCG, Pinto da Silva L. Chemiluminescence and Bioluminescence as an Excitation Source in the Photodynamic Therapy of Cancer: A Critical Review. Chemphyschem 2016; 17:2286-94. [DOI: 10.1002/cphc.201600270] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 04/22/2016] [Indexed: 01/16/2023]
Affiliation(s)
- Carla M. Magalhães
- Centro de Investigação em Química; Departamento de Química e Bioquímica; Faculdade de Ciências; Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
| | - Joaquim C. G. Esteves da Silva
- Centro de Investigação em Química; Departamento de Química e Bioquímica; Faculdade de Ciências; Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
- Centro de Investigação em Química; Departamento de Geociências, Ambiente e Ordenamento do Território; Faculdade de Ciências; Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
| | - Luís Pinto da Silva
- Centro de Investigação em Química; Departamento de Química e Bioquímica; Faculdade de Ciências; Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
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8
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Zhou JG, Williams QL, Walters W, Deng ZY. How Does the Local Electrostatic Field Influence Emitted Wavelengths and Bioluminescent Intensities of Modified Heteroaromatic Luciferins? J Phys Chem B 2015. [DOI: 10.1021/acs.jpcb.5b03827] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jian-Ge Zhou
- Department
of Physics, Atmospheric Sciences, and Geoscience, Jackson State University, Jackson, Mississippi 39217, United States
| | - Quinton L. Williams
- Department
of Physics and Astronomy, Howard University, Washington D.C. 20059, United States
| | - Wilbur Walters
- Department
of Physics, Atmospheric Sciences, and Geoscience, Jackson State University, Jackson, Mississippi 39217, United States
| | - Zhen-Yan Deng
- Department
of Physics, Shanghai University, Shanghai 200444, China
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9
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Pinto da Silva L, Esteves da Silva JCG. A theoretical analysis of the potential role of π-π stacking interactions in the photoprotolytic cycle of firefly luciferin. Chemphyschem 2014; 15:3761-7. [PMID: 25236293 DOI: 10.1002/cphc.201402558] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Indexed: 11/10/2022]
Abstract
Firefly oxyluciferin is a photoacid that presents a pH-sensitive fluorescence, which results from pH-dependent changes on the conformation of self-aggregated π-π stacking complexes. Luciferin is a derivative of oxyluciferin with very similar fluorescence and photoacidic properties. This similarity indicates that luciferin is also expected to be able to form π-π stacking complexes, but no pH-sensitive fluorescence is found for this compound. Here, a theoretical approach is used to rationalize this finding. We have found that luciferin only forms π-π stacking complexes in the ground state at acidic pH. At basic pH and in the excited state, luciferin is present as a dianion. This species is not able to self-aggregate, owing to repulsive electrostatic interactions. Thus, this emissive species is not subject to π-π stacking interactions; this explains its pH-insensitive fluorescence.
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Affiliation(s)
- Luís Pinto da Silva
- Centro de Investigação em Química (CIQ-UP), Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade do Porto, R. Campo Alegre 697, 4169-007 Porto (Portugal)
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10
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Jathoul AP, Grounds H, Anderson JC, Pule MA. A dual-color far-red to near-infrared firefly luciferin analogue designed for multiparametric bioluminescence imaging. Angew Chem Int Ed Engl 2014; 53:13059-63. [PMID: 25266918 PMCID: PMC4501308 DOI: 10.1002/anie.201405955] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Revised: 09/03/2014] [Indexed: 11/23/2022]
Abstract
Red-shifted bioluminescent emitters allow improved in vivo tissue penetration and signal quantification, and have led to the development of beetle luciferin analogues that elicit red-shifted bioluminescence with firefly luciferase (Fluc). However, unlike natural luciferin, none have been shown to emit different colors with different luciferases. We have synthesized and tested the first dual-color, far-red to near-infrared (nIR) emitting analogue of beetle luciferin, which, akin to natural luciferin, exhibits pH dependent fluorescence spectra and emits bioluminescence of different colors with different engineered Fluc enzymes. Our analogue produces different far-red to nIR emission maxima up to λ(max)=706 nm with different Fluc mutants. This emission is the most red-shifted bioluminescence reported without using a resonance energy transfer acceptor. This improvement should allow tissues to be more effectively probed using multiparametric deep-tissue bioluminescence imaging.
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Affiliation(s)
- Amit P Jathoul
- Department of Haematology, UCL Cancer Institute and NIHR University College London Hospitals Biomedical Research CentreLondon, WC1E 6BT (UK)
| | - Helen Grounds
- Department of Chemistry, University College LondonLondon, WC1E 6BT (UK)
| | - James C Anderson
- Department of Chemistry, University College LondonLondon, WC1E 6BT (UK)
| | - Martin A Pule
- Department of Haematology, UCL Cancer Institute and NIHR University College London Hospitals Biomedical Research CentreLondon, WC1E 6BT (UK)
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11
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Theoretical Study of the Nontraditional Enol-Based Photoacidity of Firefly Oxyluciferin. Chemphyschem 2014; 16:455-64. [DOI: 10.1002/cphc.201402533] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Revised: 09/16/2014] [Indexed: 11/07/2022]
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12
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Jathoul AP, Grounds H, Anderson JC, Pule MA. A Dual-Color Far-Red to Near-Infrared Firefly Luciferin Analogue Designed for Multiparametric Bioluminescence Imaging. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201405955] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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13
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Pinto da Silva L, Esteves da Silva JCG. Chemiexcitation Induced Proton Transfer: Enolate Oxyluciferin as the Firefly Bioluminophore. J Phys Chem B 2014; 119:2140-8. [DOI: 10.1021/jp5036458] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Luís Pinto da Silva
- Centro de Investigação
em Química, Departamento de Química e Bioquímica, Faculdade de Ciências da Universidade do Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Joaquim C. G. Esteves da Silva
- Centro de Investigação
em Química, Departamento de Química e Bioquímica, Faculdade de Ciências da Universidade do Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
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14
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Milne BF. Red-shifting the optical response of firefly oxyluciferin with group 15/16 substitutions. Phys Chem Chem Phys 2014; 16:24971-7. [DOI: 10.1039/c4cp04347b] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A range of firefly oxyluciferin analogues symmetrically substituted with group 15 and 16 elements have been found to have red-shifted first excitation energies with the heaviest derivative investigated (As/Se) displaying a shift of −0.69 eV.
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Affiliation(s)
- Bruce F. Milne
- Centre for Computational Physics
- Department of Physics
- University of Coimbra
- 3004-516 Coimbra, Portugal
- Nano-Bio Spectroscopy group and ETSF Scientific Development Centre
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