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Shanina E, Kuhaudomlarp S, Lal K, Seeberger PH, Imberty A, Rademacher C. Allosterische, Wirkstoff‐zugängliche Bindestellen in β‐Propeller‐Lektinen. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202109339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Elena Shanina
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces Am Mühlenberg 1 14476 Potsdam Deutschland
- Department of Chemistry and Biochemistry Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
| | - Sakonwan Kuhaudomlarp
- University Grenoble Alpes CNRS CERMAV 38000 Grenoble Frankreich
- Department of Biochemistry Faculty of Science Mahidol University 10400 Bangkok Thailand
- Center for Excellence in Protein and Enzyme Technology Faculty of Science Mahidol University 10400 Bangkok Thailand
| | - Kanhaya Lal
- University Grenoble Alpes CNRS CERMAV 38000 Grenoble Frankreich
- Dipartimento di Chimica via Golgi 19 Università degli Studi di Milano 20133 Milano Italien
| | - Peter H. Seeberger
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces Am Mühlenberg 1 14476 Potsdam Deutschland
- Department of Chemistry and Biochemistry Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
| | - Anne Imberty
- University Grenoble Alpes CNRS CERMAV 38000 Grenoble Frankreich
| | - Christoph Rademacher
- Department of Biomolecular Systems Max Planck Institute of Colloids and Interfaces Am Mühlenberg 1 14476 Potsdam Deutschland
- Department of Chemistry and Biochemistry Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Department of Pharmaceutical Chemistry University of Vienna Althanstraße 14 1080 Wien Österreich
- Department of Microbiology, Immunobiology and Genetics Max F. Perutz Labs Campus Vienna Biocenter 5 1030 Wien Österreich
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2
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Shanina E, Kuhaudomlarp S, Lal K, Seeberger PH, Imberty A, Rademacher C. Druggable Allosteric Sites in β-Propeller Lectins. Angew Chem Int Ed Engl 2022; 61:e202109339. [PMID: 34713573 PMCID: PMC9298952 DOI: 10.1002/anie.202109339] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 10/05/2021] [Indexed: 12/24/2022]
Abstract
Carbohydrate‐binding proteins (lectins) are auspicious targets in drug discovery to combat antimicrobial resistance; however, their non‐carbohydrate drug‐like inhibitors are still unavailable. Here, we present a druggable pocket in a β‐propeller lectin BambL from Burkholderia ambifaria as a potential target for allosteric inhibitors. This site was identified employing 19F NMR fragment screening and a computational pocket prediction algorithm SiteMap. The structure–activity relationship study revealed the most promising fragment with a dissociation constant of 0.3±0.1 mM and a ligand efficiency of 0.3 kcal mol−1 HA−1 that affected the orthosteric site. This effect was substantiated by site‐directed mutagenesis in the orthosteric and secondary pockets. Future drug‐discovery campaigns that aim to develop small molecule inhibitors can benefit from allosteric sites in lectins as a new therapeutic approach against antibiotic‐resistant pathogens.
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Affiliation(s)
- Elena Shanina
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.,Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany
| | - Sakonwan Kuhaudomlarp
- University Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.,Department of Biochemistry, Faculty of Science, Mahidol University, 10400, Bangkok, Thailand.,Center for Excellence in Protein and Enzyme Technology, Faculty of Science, Mahidol University, 10400, Bangkok, Thailand
| | - Kanhaya Lal
- University Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.,Dipartimento di Chimica via Golgi 19, Universita" degli Studi di Milano, 20133, Milano, Italy
| | - Peter H Seeberger
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.,Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany
| | - Anne Imberty
- University Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France
| | - Christoph Rademacher
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.,Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany.,Department of Pharmaceutical Chemistry, University of Vienna, Althanstrasse 14, 1080, Vienna, Austria.,Department of Microbiology, Immunobiology and Genetics, Max F. Perutz Labs, Campus Vienna Biocenter 5, 1030, Vienna, Austria
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Screening of a Library of Oligosaccharides Targeting Lectin LecB of Pseudomonas Aeruginosa and Synthesis of High Affinity Oligoglycoclusters. Molecules 2018; 23:molecules23123073. [PMID: 30477231 PMCID: PMC6321166 DOI: 10.3390/molecules23123073] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Revised: 11/15/2018] [Accepted: 11/21/2018] [Indexed: 12/04/2022] Open
Abstract
The Gram negative bacterium Pseudomonas aeruginosa (PA) is an opportunistic bacterium that causes severe and chronic infection of immune-depressed patients. It has the ability to form a biofilm that gives a selective advantage to the bacteria with respect to antibiotherapy and host defenses. Herein, we have focused on the tetrameric soluble lectin which is involved in bacterium adherence to host cells, biofilm formation, and cytotoxicity. It binds to l-fucose, d-mannose and glycan exposing terminal fucose or mannose. Using a competitive assay on microarray, 156 oligosaccharides and polysaccharides issued from fermentation or from the biomass were screened toward their affinity to LecB. Next, the five best ligands (Lewisa, Lewisb, Lewisx, siayl-Lewisx and 3-fucosyllactose) were derivatized with a propargyl aglycon allowing the synthesis of 25 trivalent, 25 tetravalent and 5 monovalent constructions thanks to copper catalyzed azide alkyne cycloaddition. The 55 clusters were immobilized by DNA Directed immobilization leading to the fabrication of a glycocluster microarray. Their binding to LecB was studied. Multivalency improved the binding to LecB. The binding structure relationship of the clusters is mainly influenced by the carbohydrate residues. Molecular simulations indicated that the simultaneous contact of both binding sites of monomer A and D seems to be energetically possible.
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Bella M, Šesták S, Moncoľ J, Koóš M, Poláková M. Synthesis of 1,4-imino-L-lyxitols modified at C-5 and their evaluation as inhibitors of GH38 α-mannosidases. Beilstein J Org Chem 2018; 14:2156-2162. [PMID: 30202468 PMCID: PMC6122390 DOI: 10.3762/bjoc.14.189] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 07/24/2018] [Indexed: 01/01/2023] Open
Abstract
A synthetic approach to 1,4-imino-L-lyxitols with various modifications at the C-5 position is reported. These imino-L-lyxitol cores were used for the preparation of a series of N-(4-halobenzyl)polyhydroxypyrrolidines. An impact of the C-5 modification on the inhibition and selectivity against GH38 α-mannosidases from Drosophila melanogaster, the Golgi (GMIIb) and lysosomal (LManII) mannosidases and commercial jack bean α-mannosidase from Canavalia ensiformis was evaluated. The modification at C-5 affected their inhibitory activity against the target GMIIb enzyme. In contrast, no inhibition effect of the pyrrolidines against LManII was observed. The modification of the imino-L-lyxitol core is therefore a suitable motif for the design of inhibitors with desired selectivity against the target GMIIb enzyme.
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Affiliation(s)
- Maroš Bella
- Department of Glycochemistry, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 38, Bratislava, Slovakia
| | - Sergej Šesták
- Department of Glycochemistry, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 38, Bratislava, Slovakia
| | - Ján Moncoľ
- Department of Inorganic Chemistry, Faculty of Chemical and Food Technology, Radlinského 9, SK-812 37 Bratislava, Slovakia
| | - Miroslav Koóš
- Department of Glycochemistry, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 38, Bratislava, Slovakia
| | - Monika Poláková
- Department of Glycochemistry, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 38, Bratislava, Slovakia
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5
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Dingjan T, Gillon É, Imberty A, Pérez S, Titz A, Ramsland PA, Yuriev E. Virtual Screening Against Carbohydrate-Binding Proteins: Evaluation and Application to Bacterial Burkholderia ambifaria Lectin. J Chem Inf Model 2018; 58:1976-1989. [DOI: 10.1021/acs.jcim.8b00185] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Tamir Dingjan
- Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Victoria 3052, Australia
| | - Émilie Gillon
- University Grenoble Alpes, CNRS, CERMAV, 38000 Grenoble, France
| | - Anne Imberty
- University Grenoble Alpes, CNRS, CERMAV, 38000 Grenoble, France
| | - Serge Pérez
- University Grenoble Alpes, CNRS, DPM, 38000 Grenoble, France
| | - Alexander Titz
- Chemical Biology of Carbohydrates, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research, D-66123 Saarbrücken, Germany
- Deutsches Zentrum für Infektionsforschung (DZIF), Standort Hannover-Braunschweig, Germany
- Department of Pharmacy, Saarland University, D-66123 Saarbrücken, Germany
| | - Paul A. Ramsland
- School of Science, RMIT University, Bundoora, Victoria 3083, Australia
- Department of Surgery Austin Health, University of Melbourne, Heidelberg, Victoria 3084, Australia
- Department of Immunology, Monash University, Alfred Medical Research and Education Precinct, Melbourne, Victoria 3004, Australia
- Burnet Institute, Melbourne, Victoria 3004, Australia
| | - Elizabeth Yuriev
- Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Victoria 3052, Australia
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6
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2013-2014. MASS SPECTROMETRY REVIEWS 2018; 37:353-491. [PMID: 29687922 DOI: 10.1002/mas.21530] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 11/29/2016] [Indexed: 06/08/2023]
Abstract
This review is the eighth update of the original article published in 1999 on the application of Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2014. Topics covered in the first part of the review include general aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, fragmentation, and arrays. The second part of the review is devoted to applications to various structural types such as oligo- and poly- saccharides, glycoproteins, glycolipids, glycosides, and biopharmaceuticals. Much of this material is presented in tabular form. The third part of the review covers medical and industrial applications of the technique, studies of enzyme reactions, and applications to chemical synthesis. © 2018 Wiley Periodicals, Inc. Mass Spec Rev 37:353-491, 2018.
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Affiliation(s)
- David J Harvey
- Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, United Kingdom
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7
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Goyard D, Baldoneschi V, Varrot A, Fiore M, Imberty A, Richichi B, Renaudet O, Nativi C. Multivalent Glycomimetics with Affinity and Selectivity toward Fucose-Binding Receptors from Emerging Pathogens. Bioconjug Chem 2017; 29:83-88. [DOI: 10.1021/acs.bioconjchem.7b00616] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
| | - Veronica Baldoneschi
- Department
of Chemistry Ugo Schiff, University of Florence, via della Lastruccia, 13−50019 Sesto F.no (FI) Italy
| | | | - Michele Fiore
- ICBMS, University of Lyon, 43 Blvd. du 11 novembre 1918, 69622, Villeubanne Cedex, France
| | | | - Barbara Richichi
- Department
of Chemistry Ugo Schiff, University of Florence, via della Lastruccia, 13−50019 Sesto F.no (FI) Italy
| | | | - Cristina Nativi
- Department
of Chemistry Ugo Schiff, University of Florence, via della Lastruccia, 13−50019 Sesto F.no (FI) Italy
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8
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Dosekova E, Filip J, Bertok T, Both P, Kasak P, Tkac J. Nanotechnology in Glycomics: Applications in Diagnostics, Therapy, Imaging, and Separation Processes. Med Res Rev 2017; 37:514-626. [PMID: 27859448 PMCID: PMC5659385 DOI: 10.1002/med.21420] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Revised: 09/08/2016] [Accepted: 09/21/2016] [Indexed: 12/14/2022]
Abstract
This review comprehensively covers the most recent achievements (from 2013) in the successful integration of nanomaterials in the field of glycomics. The first part of the paper addresses the beneficial properties of nanomaterials for the construction of biosensors, bioanalytical devices, and protocols for the detection of various analytes, including viruses and whole cells, together with their key characteristics. The second part of the review focuses on the application of nanomaterials integrated with glycans for various biomedical applications, that is, vaccines against viral and bacterial infections and cancer cells, as therapeutic agents, for in vivo imaging and nuclear magnetic resonance imaging, and for selective drug delivery. The final part of the review describes various ways in which glycan enrichment can be effectively done using nanomaterials, molecularly imprinted polymers with polymer thickness controlled at the nanoscale, with a subsequent analysis of glycans by mass spectrometry. A short section describing an active glycoprofiling by microengines (microrockets) is covered as well.
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Affiliation(s)
- Erika Dosekova
- Department of Glycobiotechnology, Institute of ChemistrySlovak Academy of SciencesDubravska cesta 9845 38BratislavaSlovakia
| | - Jaroslav Filip
- Center for Advanced MaterialsQatar UniversityP.O. Box 2713DohaQatar
| | - Tomas Bertok
- Department of Glycobiotechnology, Institute of ChemistrySlovak Academy of SciencesDubravska cesta 9845 38BratislavaSlovakia
| | - Peter Both
- School of Chemistry, Manchester Institute of BiotechnologyThe University of Manchester131 Princess StreetManchesterM1 7DNUK
| | - Peter Kasak
- Center for Advanced MaterialsQatar UniversityP.O. Box 2713DohaQatar
| | - Jan Tkac
- Department of Glycobiotechnology, Institute of ChemistrySlovak Academy of SciencesDubravska cesta 9845 38BratislavaSlovakia
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9
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Galanos N, Chen Y, Michael ZP, Gillon E, Dutasta JP, Star A, Imberty A, Martinez A, Vidal S. Cyclotriveratrylene-Based Glycoclusters as High Affinity Ligands of Bacterial Lectins fromPseudomonas aeruginosaandBurkholderia ambifaria. ChemistrySelect 2016. [DOI: 10.1002/slct.201601324] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Nicolas Galanos
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires; Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246; CNRS and Université Claude Bernard Lyon 1; 43 Boulevard du 11 Novembre 1918, F- 69622 Villeurbanne France
- CERMAV (UPR5301); CNRS and Université Grenoble Alpes; 601 Rue de la Chimie, BP 53 38041 Grenoble France
| | - Yanan Chen
- Department of Chemistry; University of Pittsburgh; Pittsburgh, PA 15260 United States
| | - Zachary P. Michael
- Department of Chemistry; University of Pittsburgh; Pittsburgh, PA 15260 United States
| | - Emilie Gillon
- CERMAV (UPR5301); CNRS and Université Grenoble Alpes; 601 Rue de la Chimie, BP 53 38041 Grenoble France
| | - Jean-Pierre Dutasta
- Laboratoire de Chimie; CNRS and École Normale Supérieure de Lyon; 46 Allée d'Italie, F- 69364 Lyon 07 France
| | - Alexander Star
- Department of Chemistry; University of Pittsburgh; Pittsburgh, PA 15260 United States
| | - Anne Imberty
- CERMAV (UPR5301); CNRS and Université Grenoble Alpes; 601 Rue de la Chimie, BP 53 38041 Grenoble France
| | - Alexandre Martinez
- Laboratoire de Chimie; CNRS and École Normale Supérieure de Lyon; 46 Allée d'Italie, F- 69364 Lyon 07 France
- Aix Marseille Univ, CNRS; Centrale Marseille, iSm2 Marseille France
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires; Laboratoire de Chimie Organique 2 - Glycochimie, UMR 5246; CNRS and Université Claude Bernard Lyon 1; 43 Boulevard du 11 Novembre 1918, F- 69622 Villeurbanne France
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10
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Wang S, Dupin L, Noël M, Carroux CJ, Renaud L, Géhin T, Meyer A, Souteyrand E, Vasseur JJ, Vergoten G, Chevolot Y, Morvan F, Vidal S. Toward the Rational Design of Galactosylated Glycoclusters That Target Pseudomonas aeruginosa Lectin A (LecA): Influence of Linker Arms That Lead to Low-Nanomolar Multivalent Ligands. Chemistry 2016; 22:11785-94. [PMID: 27412649 DOI: 10.1002/chem.201602047] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Indexed: 02/03/2023]
Abstract
Anti-infectious strategies against pathogen infections can be achieved through antiadhesive strategies by using multivalent ligands of bacterial virulence factors. LecA and LecB are lectins of Pseudomonas aeruginosa implicated in biofilm formation. A series of 27 LecA-targeting glycoclusters have been synthesized. Nine aromatic galactose aglycons were investigated with three different linker arms that connect the central mannopyranoside core. A low-nanomolar (Kd =19 nm, microarray) ligand with a tyrosine-based linker arm could be identified in a structure-activity relationship study. Molecular modeling of the glycoclusters bound to the lectin tetramer was also used to rationalize the binding properties observed.
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Affiliation(s)
- Shuai Wang
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Lucie Dupin
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Mathieu Noël
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Cindy J Carroux
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Louis Renaud
- Institut des Nanotechnologies de Lyon, UMR CNRS 5270, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France
| | - Thomas Géhin
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Albert Meyer
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Eliane Souteyrand
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France
| | - Gérard Vergoten
- Unité de Glycobiologie Structurale et Fonctionnelle (UGSF) - UMR 8576, CNRS - Université de Lille 1, Cité Scientifique, Avenue Mendeleiev, Bat C9, 59655, Villeneuve d'Ascq cedex, France
| | - Yann Chevolot
- Institut des Nanotechnologies de Lyon (INL) - UMR CNRS 5270, Ecole Centrale de Lyon, Université de Lyon, 36 Avenue Guy de Collongue, 69134, Ecully cedex, France.
| | - François Morvan
- Institut des Biomolécules Max Mousseron (IBMM) - UMR 5247, CNRS - Université Montpellier - ENSCM, Place Eugène Bataillon, CC1704, 34095, Montpellier cedex 5, France.
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, Laboratoire de Chimie Organique 2 - Glycochimie UMR 5246, CNRS - Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69622, Villeurbanne, France.
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Galanos N, Gillon E, Imberty A, Matthews SE, Vidal S. Pentavalent pillar[5]arene-based glycoclusters and their multivalent binding to pathogenic bacterial lectins. Org Biomol Chem 2016; 14:3476-81. [PMID: 26972051 DOI: 10.1039/c6ob00220j] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Anti-adhesive glycoclusters offer potential as therapeutic alternatives to classical antibiotics in treating infections. Pillar[5]arenes functionalised with either five galactose or five fucose residues were readily prepared using CuAAC reactions and evaluated for their binding to three therapeutically relevant bacterial lectins: LecA and Lec B from Pseudomonas aeuruginosa and BambL from Burkholderia ambifaria. Steric interactions were demonstrated to be a key factor in achieving good binding to LecA with more flexible galactose glycoclusters showing enhanced activity. In contrast binding to the fucose-selective lectins confirmed the importance of topology of the glycoclusters for activity with the pillar[5]arene ligand proving a selective ligand for BambL.
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Affiliation(s)
- Nicolas Galanos
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-6922 Villeurbanne, France.
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12
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Ligeour C, Dupin L, Angeli A, Vergoten G, Vidal S, Meyer A, Souteyrand E, Vasseur JJ, Chevolot Y, Morvan F. Importance of topology for glycocluster binding to Pseudomonas aeruginosa and Burkholderia ambifaria bacterial lectins. Org Biomol Chem 2015; 13:11244-54. [PMID: 26412676 DOI: 10.1039/c5ob01445j] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Pseudomonas aeruginosa (PA) and Burkholderia ambifaria (BA) are two opportunistic Gram negative bacteria and major infectious agents involved in lung infection of cystic fibrosis patients. Both bacteria can develop resistance to conventional antibiotherapies. An alternative strategy consists of targeting virulence factors in particular lectins with high affinity ligands such as multivalent glycoclusters. LecA (PA-IL) and LecB (PA-IIL) are two tetravalent lectins from PA that recognise galactose and fucose respectively. BambL lectin from BA is trimeric with 2 binding sites per monomer and is also specific for fucose. These three lectins are potential therapeutic targets in an anti-adhesive anti-bacterial approach. Herein, we report the synthesis of 18 oligonucleotide pentofuranose-centered or mannitol-centered glycoclusters leading to tri-, penta- or decavalent clusters with different topologies. The linker arm length between the core and the carbohydrate epitope was also varied leading to 9 galactoclusters targeting LecA and 9 fucoclusters targeting both LecB and BambL. Their dissociation constants (Kd) were determined using a DNA-based carbohydrate microarray technology. The trivalent xylo-centered galactocluster and the ribo-centered fucocluster exhibited the best affinity for LecA and LecB respectively while the mannitol-centered decafucocluster displayed the best affinity to BambL. These data demonstrated that the topology and nature of linkers were the predominant factors for achieving high affinity rather than valency.
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Affiliation(s)
- Caroline Ligeour
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, Université de Montpellier, ENSCM, place Eugène Bataillon, CC1704, 34095 Montpellier Cedex 5, France.
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13
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Ayaz Ahmed KB, Mohammed AS, Veerappan A. Interaction of sugar stabilized silver nanoparticles with the T-antigen specific lectin, jacalin from Artocarpus integrifolia. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 145:110-116. [PMID: 25770933 DOI: 10.1016/j.saa.2015.01.133] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 01/17/2015] [Accepted: 01/29/2015] [Indexed: 06/04/2023]
Abstract
The advances in nanomedicine demonstrate the anticancer properties of silver nanoparticles (AgNPs) and considered as an alternative to the available chemotherapeutic agents. Owing to the preferential interaction of Artocarpus integrifolia lectin (jacalin) with Galβ1-3GalNAcα (a chemically well-defined tumor associated antigen), a study was undertaken to understand the interaction mechanism of AgNPs with jacalin in presence of specific sugar, galactose. Fluorescence spectroscopic analysis revealed that the AgNPs binding significantly quenched the intrinsic fluorescence of jacalin through a static quenching mechanism, and a non-radiative energy transfer occurred within the molecules. Association constants obtained from the interaction of different sugar-stabilized AgNPs with jacalin are in the order of 10(4)M(-1), this is in the same range as those obtained for the interaction of lectin with carbohydrate and hydrophobic ligand. Each subunit of the tetrameric jacalin binds one AgNPs, and the stoichiometry was unaffected by the presence of the specific sugar, galactose. Hemagglutination assay shows that sugar stabilized AgNPs interacts to jacalin at a site that is different from the saccharide-binding site. Analysis of the FTIR spectra of jacalin indicates that the binding of AgNPs does not alter the secondary structure of jacalin. More importantly, AgNPs exists in nano form even after interacting with the lectin. These results suggest that the development of lectin-AgNPs conjugate would be possible for diagnosis and treatment of cancer.
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Affiliation(s)
- Khan Behlol Ayaz Ahmed
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA University, Thirumalaisamudaram, Thanjavur, Tamil Nadu, India
| | - Ansari Sulthan Mohammed
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA University, Thirumalaisamudaram, Thanjavur, Tamil Nadu, India
| | - Anbazhagan Veerappan
- Department of Chemistry, School of Chemical and Biotechnology, SASTRA University, Thirumalaisamudaram, Thanjavur, Tamil Nadu, India.
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14
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Roy R, Shiao TC. Glyconanosynthons as powerful scaffolds and building blocks for the rapid construction of multifaceted, dense and chiral dendrimers. Chem Soc Rev 2015; 44:3924-41. [DOI: 10.1039/c4cs00359d] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The arsenal of available carbohydrates can be manipulated to provide versatile building blocks toward the syntheses of complex and chiral dendrimers.
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Affiliation(s)
- René Roy
- Pharmaqam and Nanoqam
- Department of Chemistry
- Université du Québec à Montréal
- Montréal
- Canada
| | - Tze Chieh Shiao
- Pharmaqam and Nanoqam
- Department of Chemistry
- Université du Québec à Montréal
- Montréal
- Canada
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15
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Buffet K, Gillon E, Holler M, Nierengarten JF, Imberty A, Vincent SP. Fucofullerenes as tight ligands of RSL and LecB, two bacterial lectins. Org Biomol Chem 2015; 13:6482-92. [DOI: 10.1039/c5ob00689a] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A series of water-soluble glycofullerenes containing up to 24 fucose residues were tested against the two bacterial lectins LecB and RSL, and C60(E)12 bearing 24 fucose residues appeared to be the best known inhibitor of both lectins to date.
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Affiliation(s)
- Kevin Buffet
- University of Namur (UNamur)
- Académie Louvain
- Département de Chimie
- Laboratoire de Chimie Bio-Organique
- B-5000 Namur
| | - Emilie Gillon
- CERMAV - CNRS (affiliated to Université Grenoble Alpes and ICMG)
- Grenoble
- France
| | - Michel Holler
- Laboratoire de Chimie des Matériaux Moléculaires
- Université de Strasbourg et CNRS (UMR 7509)
- Ecole Européenne de Chimie
- Polymères et Matériaux (ECPM)
- 67087 Strasbourg Cedex 2
| | - Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires
- Université de Strasbourg et CNRS (UMR 7509)
- Ecole Européenne de Chimie
- Polymères et Matériaux (ECPM)
- 67087 Strasbourg Cedex 2
| | - Anne Imberty
- CERMAV - CNRS (affiliated to Université Grenoble Alpes and ICMG)
- Grenoble
- France
| | - Stéphane P. Vincent
- University of Namur (UNamur)
- Académie Louvain
- Département de Chimie
- Laboratoire de Chimie Bio-Organique
- B-5000 Namur
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16
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Wang S, Galanos N, Rousset A, Buffet K, Cecioni S, Lafont D, Vincent SP, Vidal S. Fucosylation of triethyleneglycol-based acceptors into 'clickable' α-fucosides. Carbohydr Res 2014; 395:15-8. [PMID: 24995912 DOI: 10.1016/j.carres.2014.06.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Revised: 05/20/2014] [Accepted: 06/04/2014] [Indexed: 11/30/2022]
Abstract
Design of multivalent glycoconjugates can find applications such as in anti-adhesive therapy against bacterial infections. Nevertheless, the access to such macromolecules requires functionalized building blocks prepared in a minimum number of steps and on a multi-gram scale at least for the laboratory. Fucose is a representative epitope used by several bacteria for adhesion to their host cells. The stereoselective, rapid, and efficient access to two 'clickable' α-fucosides was re-investigated using PPh3/CBr4-promoted glycosylation of chloro- (as precursors of azido-) and alkyne-functionalized triethyleneglycols with fully unprotected l-fucose. The convenient access to such building blocks paves the way to the design of new multivalent glycoconjugates functionalized with fucose epitopes and their applications.
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Affiliation(s)
- Shuai Wang
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
| | - Nicolas Galanos
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
| | - Audric Rousset
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
| | - Kevin Buffet
- Department of Chemistry, University of Namur, Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Samy Cecioni
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
| | - Dominique Lafont
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France
| | - Stéphane P Vincent
- Department of Chemistry, University of Namur, Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Sébastien Vidal
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, CO2-Glyco, UMR 5246, CNRS, Université Claude Bernard Lyon 1, Université de Lyon, 43 Boulevard du 11 Novembre 1918, F-69622 Villeurbanne, France.
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