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Mansouri R, Bouzina A, Sekiou O, Aouf Z, Zerrouki R, Ibrahim-Ouali M, Aouf NE. Novel pseudonucleosides and sulfamoyl-oxazolidinone β- D-glucosamine derivative as anti-COVID-19: design, synthesis, and in silico study. J Biomol Struct Dyn 2023; 41:10999-11016. [PMID: 37098814 DOI: 10.1080/07391102.2023.2203246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Accepted: 12/10/2022] [Indexed: 04/27/2023]
Abstract
New pseudonucleosides containing cyclic sulfamide moiety and sulfamoyl β-D-glucosamine derivative are described. These pseudonucleosides are synthesized in good yields starting from chlorosulfonyl isocyanate and β-D-glucosamine hydrochloride in five steps; (protection, acetylation, removal of the Boc group, sulfamoylation, and cyclization). Further, novel glycosylated sulfamoyloxazolidin-2-one is prepared in three steps; carbamoylation, sulfamoylation, and intramolecular cyclization. The structures of the synthesized compounds were confirmed by usual spectroscopic and spectrometric methods NMR, IR, MS, and EA. Interesting molecular docking of the prepared pseudonucleosides and (Beclabuvir, Remdesivir) drugs with SARS-CoV-2/Mpro (PDB:5R80) was conducted using the same parameters for a fair comparison. A low binding affinity of the synthesized compounds compared to the Beclabuvir and other analysis showed that pseudonucleosides have the ability to inhibit SARS-CoV-2. After the motivating results of molecular docking study, the complex between the SARS-CoV-2 Mpro and compound 7 was subjected to 100 ns molecular dynamics (MD) simulation using Desmond module of Schrodinger suite, during which the receptor-ligand complex showed substantial stability after 10 ns of MD simulation. Also, we studied the prediction of absorption, distribution, properties of metabolism, excretion, and toxicity (ADMET) of the synthesized compounds.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Rachida Mansouri
- Laboratory of Applied Organic Chemistry, Bioorganic Chemistry Group, Sciences Faculty, Chemistry Department, Badji Mokhtar-Annaba University, Annaba, Algeria
- Environment, modeling, and climate change department, Environmental Research Center (CRE), Box 12, 23000 Annaba, Algeria
| | - Abdeslem Bouzina
- Laboratory of Applied Organic Chemistry, Bioorganic Chemistry Group, Sciences Faculty, Chemistry Department, Badji Mokhtar-Annaba University, Annaba, Algeria
| | - Omar Sekiou
- Environment, modeling, and climate change department, Environmental Research Center (CRE), Box 12, 23000 Annaba, Algeria
| | - Zineb Aouf
- Laboratory of Applied Organic Chemistry, Bioorganic Chemistry Group, Sciences Faculty, Chemistry Department, Badji Mokhtar-Annaba University, Annaba, Algeria
| | - Rachida Zerrouki
- Laboratoire PEIRENE, EA7500 Université de Limoges, 123 avenue Albert Thomas, 87000, Limoges cedex, France
| | | | - Nour Eddine Aouf
- Laboratory of Applied Organic Chemistry, Bioorganic Chemistry Group, Sciences Faculty, Chemistry Department, Badji Mokhtar-Annaba University, Annaba, Algeria
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2
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Zeng K, Ye J, Meng X, Dechert S, Simon M, Gong S, Mata RA, Zhang K. Anomeric Stereoauxiliary Cleavage of the C-N Bond of d-Glucosamine for the Preparation of Imidazo[1,5-a]pyridines. Chemistry 2022; 28:e202200648. [PMID: 35319128 PMCID: PMC9325398 DOI: 10.1002/chem.202200648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Indexed: 11/13/2022]
Abstract
The targeted cleavage of the C-N bonds of alkyl primary amines in sustainable compounds of biomass according to a metal-free pathway and the conjunction of nitrogen in the synthesis of imidazo[1,5-a]pyridines are still highly challenging. Despite tremendous progress in the synthesis of imidazo[1,5-a]pyridines over the past decade, many of them can still not be efficiently prepared. Herein, we report an anomeric stereoauxiliary approach for the synthesis of a wide range of imidazo[1,5-a]pyridines after cleaving the C-N bond of d-glucosamine (α-2° amine) from biobased resources. This new approach expands the scope of readily accessible imidazo[1,5-a]pyridines relative to existing state-of-the-art methods. A key strategic advantage of this approach is that the α-anomer of d-glucosamine enables C-N bond cleavage via a seven-membered ring transition state. By using this novel method, a series of imidazo[1,5-a]pyridine derivatives (>80 examples) was synthesized from pyridine ketones (including para-dipyridine ketone) and aldehydes (including para-dialdehyde). Imidazo[1,5-a]pyridine derivatives containing diverse important deuterated C(sp2 )-H and C(sp3 )-H bonds were also efficiently achieved.
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Affiliation(s)
- Kui Zeng
- Sustainable Materials and ChemistryGeorg-August-University of GöttingenBüsgenweg 437077GöttingenGermany
| | - Jin Ye
- Institute of Physical ChemistryGeorg-August-University of GöttingenTammannstraße 637077GöttingenGermany
| | - Xintong Meng
- Sustainable Materials and ChemistryGeorg-August-University of GöttingenBüsgenweg 437077GöttingenGermany
| | - Sebastian Dechert
- Institute of Inorganic ChemistryGeorg-August-University of GöttingenTammannstraße 437077GöttingenGermany
| | - Martin Simon
- Institute of Organic and Biomolecular ChemistryGeorg-August-University of GöttingenTammannstraße 237077GöttingenGermany
| | - Shuaiyu Gong
- Sustainable Materials and ChemistryGeorg-August-University of GöttingenBüsgenweg 437077GöttingenGermany
| | - Ricardo A. Mata
- Institute of Physical ChemistryGeorg-August-University of GöttingenTammannstraße 637077GöttingenGermany
| | - Kai Zhang
- Sustainable Materials and ChemistryGeorg-August-University of GöttingenBüsgenweg 437077GöttingenGermany
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Cao ZL, Zhu C, Wu WY, Zhu DD, Qian D, Zhu J, Chang TG, Sheng M, Yang XL, Liu WW. Synthesis of β-acylamino furans from glucosamine. J Carbohydr Chem 2021. [DOI: 10.1080/07328303.2021.1895195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Zhi-ling Cao
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Cong Zhu
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Wen-ying Wu
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Dan-dan Zhu
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Dong Qian
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Jian Zhu
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Tian-ge Chang
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Mei Sheng
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Xiu-li Yang
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Wei-wei Liu
- Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, Jiangsu Institute of Marine Resources, Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
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4
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Mohammed AA, Suaifan GA, Shehadeh MB, Okechukwu PN. Design, synthesis and antimicrobial evaluation of novel glycosylated-fluoroquinolones derivatives. Eur J Med Chem 2020; 202:112513. [DOI: 10.1016/j.ejmech.2020.112513] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 05/11/2020] [Accepted: 05/19/2020] [Indexed: 01/26/2023]
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Le VD, Tran VT, Dang VS, Nguyen DT, Dang CH, Nguyen TD. Physicochemical characterizations, antimicrobial activity and non-isothermal decomposition kinetics of Cinnamomum cassia essential oils. JOURNAL OF ESSENTIAL OIL RESEARCH 2019. [DOI: 10.1080/10412905.2019.1700834] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Van-Dung Le
- Vietnam Academy of Science and Technology, Graduate University of Science and Technology, Hanoi, Vietnam
- Institute of Research and Development, Duy Tan University, Da Nang, Vietnam
- Vietnam Academy of Science and Technology, Institute of Chemical Technology, Ho Chi Minh City, Vietnam
| | - Vinh-Thien Tran
- Faculty of Geology & Mineral Resources Engineering, Ho Chi Minh City University of Natural Resources and Environment, Ho Chi Minh City, Vietnam
| | - Van-Su Dang
- Department of Chemical Technology, University of Food Industry, Ho Chi Minh City, Vietnam
| | | | - Chi-Hien Dang
- Vietnam Academy of Science and Technology, Graduate University of Science and Technology, Hanoi, Vietnam
- Vietnam Academy of Science and Technology, Institute of Chemical Technology, Ho Chi Minh City, Vietnam
| | - Thanh-Danh Nguyen
- Institute of Research and Development, Duy Tan University, Da Nang, Vietnam
- Vietnam Academy of Science and Technology, Institute of Chemical Technology, Ho Chi Minh City, Vietnam
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Mohammed AAM, Suaifan GARY, Shehadeh MB, Okechukwu PN. Design, synthesis, and biological evaluation of 1,8-naphthyridine glucosamine conjugates as antimicrobial agents. Drug Dev Res 2018; 80:179-186. [PMID: 30570767 DOI: 10.1002/ddr.21508] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 12/04/2018] [Accepted: 12/05/2018] [Indexed: 12/21/2022]
Abstract
In the quest for discovering potent antimicrobial agents with lower toxicity, we envisioned the design and synthesis of nalidixic acid-D-(+)-glucosamine conjugates. The novel compounds were synthesized and evaluated for their in vitro antimicrobial activity against Gram positive bacteria, Gram negative bacteria and fungi. Cytotoxicity using MTT assay over L6 skeletal myoblast cell line, ATCC CRL-1458 was carried out. In vitro antimicrobial assay revealed that 1-ethyl-7-methyl-4-oxo-N-(1,3,4,6-tetra-O-acetyl-2-deoxy-D-glucopyranose-2-yl)-[1,8]-naphthyridine-3-carboxamide (5) and 1-ethyl-7-methyl-4-oxo-N-(2-deoxy-D-glucopyranose-2-yl)-[1,8]-naphthyridine-3-carboxamide(6) possess growth inhibitory activity against resistant Escherichia coli NCTC, 11954 (MIC 0.1589 mM) and Methicillin resistant Staphylococcus aureus ATCC, 33591 (MIC 0.1589 mM). Compound (5) was more active against Listeria monocytogenes ATCC 19115 (MIC 0.1113 mM) in comparison with the reference nalidixic acid (MIC 1.0765 mM). Interestingly, compound (6) had potential antifungal activity against Candida albicans ATCC 10231 (MIC <0.0099 mM). Remarkably, the tested compounds had low cytotoxic effect. This study indicated that glucosamine moiety inclusion into the chemical structure of the marketed nalidixic acid enhances antimicrobial activity and safety.
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Affiliation(s)
- Aya A M Mohammed
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, The University of Jordan, Amman, Jordan
| | - Ghadeer A R Y Suaifan
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, The University of Jordan, Amman, Jordan
| | - Mayadah B Shehadeh
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, The University of Jordan, Amman, Jordan
| | - Patrick N Okechukwu
- Department of Biotechnology, Faculty of Applied Sciences, UCSI University, Kuala Lumpur, Malaysia
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Nguyen TD, Dang CH, Mai DT. Biosynthesized AgNP capped on novel nanocomposite 2-hydroxypropyl-β-cyclodextrin/alginate as a catalyst for degradation of pollutants. Carbohydr Polym 2018; 197:29-37. [DOI: 10.1016/j.carbpol.2018.05.077] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 05/25/2018] [Accepted: 05/25/2018] [Indexed: 12/16/2022]
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8
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Hoang TKD, Huynh TKC, Do THT, Nguyen TD. Mannich aminomethylation of flavonoids and anti-proliferative activity against breast cancer cell. CHEMICAL PAPERS 2018. [DOI: 10.1007/s11696-018-0402-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Biswas NN, Yu TT, Kimyon Ö, Nizalapur S, Gardner CR, Manefield M, Griffith R, Black DS, Kumar N. Synthesis of antimicrobial glucosamides as bacterial quorum sensing mechanism inhibitors. Bioorg Med Chem 2017; 25:1183-1194. [DOI: 10.1016/j.bmc.2016.12.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 12/12/2016] [Accepted: 12/19/2016] [Indexed: 10/25/2022]
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10
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Synthesis, characterization, anti-inflammatory and anti-proliferative activity against MCF-7 cells of O-alkyl and O-acyl flavonoid derivatives. Bioorg Chem 2015; 63:45-52. [DOI: 10.1016/j.bioorg.2015.09.005] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2015] [Revised: 09/17/2015] [Accepted: 09/23/2015] [Indexed: 01/17/2023]
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Jones RA, Thillier Y, Panda SS, Rivera Rosario N, Hall CD, Katritzky AR. Synthesis and characterisation of glucosamine–NSAID bioconjugates. Org Biomol Chem 2014; 12:8325-35. [DOI: 10.1039/c4ob01681e] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Synthetic strategies to prepare non-steroidal anti-inflammatory drug–glucosamine bioconjugates.
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Affiliation(s)
- Rachel A. Jones
- Center for Heterocyclic Compounds
- Department of Chemistry
- University of Florida
- Gainesville, USA
| | - Yann Thillier
- Center for Heterocyclic Compounds
- Department of Chemistry
- University of Florida
- Gainesville, USA
| | - Siva S. Panda
- Center for Heterocyclic Compounds
- Department of Chemistry
- University of Florida
- Gainesville, USA
| | - Nicole Rivera Rosario
- Center for Heterocyclic Compounds
- Department of Chemistry
- University of Florida
- Gainesville, USA
| | - C. Dennis Hall
- Center for Heterocyclic Compounds
- Department of Chemistry
- University of Florida
- Gainesville, USA
| | - Alan R. Katritzky
- Center for Heterocyclic Compounds
- Department of Chemistry
- University of Florida
- Gainesville, USA
- Chemistry Department
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