1
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Lincy-Bianchi L, Häfner M, Becquart C, Tängemo C, Kurczy ME, Munier CC, Knerr L. Incorporation of Intracellular NanoSIMS Tracers to Oligonucleotide Conjugates via Strain Promoted Sydnone-Alkyne Cycloaddition. Bioconjug Chem 2024; 35:912-921. [PMID: 38860868 DOI: 10.1021/acs.bioconjchem.4c00068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
Extensive efforts have been dedicated to developing cell-specific targeting ligands that can be conjugated to therapeutic cargo, offering a promising yet still challenging strategy to deliver oligonucleotide therapeutics beyond the liver. Indeed, while the cargo and the ligand are crucial, the third component, the linker, is integral but is often overlooked. Here, we present strain-promoted sydnone-alkyne cycloaddition as a versatile linker chemistry for oligonucleotide synthesis, expanding the choices for bioconjugation of therapeutics while enabling subcellular detection of the linker and payload using nanoscale secondary ion mass spectrometry (NanoSIMS) imaging. This strategy was successfully applied to peptide and lipid ligands and profiled using the well characterized N-acetylgalactosamine (GalNAc) targeting ligand. The linker did not affect the expected activity of the conjugate and was detectable and distinguishable from the labeled cargo. Finally, this work not only offers a practical bioconjugation method but also enables the assessment of the linker's subcellular behavior, facilitating NanoSIMS imaging to monitor the three key components of therapeutic conjugates.
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Affiliation(s)
- Loujahine Lincy-Bianchi
- Medicinal Chemistry, Research and Development, Early Cardiovascular, Renal and Metabolism, Biopharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
| | - Maximilian Häfner
- Medicinal Chemistry, Research and Development, Early Cardiovascular, Renal and Metabolism, Biopharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
| | - Cécile Becquart
- DMPK, Early Cardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
| | - Carolina Tängemo
- Discovery Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
| | - Michael E Kurczy
- DMPK, Early Cardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
| | - Claire C Munier
- Medicinal Chemistry, Research and Development, Early Cardiovascular, Renal and Metabolism, Biopharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
| | - Laurent Knerr
- Medicinal Chemistry, Research and Development, Early Cardiovascular, Renal and Metabolism, Biopharmaceuticals R&D, AstraZeneca, SE-431 83 Gothenburg, Sweden
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2
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Bristiel A, Cadinot M, Pizzonero M, Taran F, Urban D, Guignard R, Guianvarc'h D. 2'-Modified Thymidines with Bioorthogonal Cyclopropene or Sydnone as Building Blocks for Copper-Free Postsynthetic Functionalization of Chemically Synthesized Oligonucleotides. Bioconjug Chem 2023; 34:1613-1621. [PMID: 37669427 DOI: 10.1021/acs.bioconjchem.3c00284] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/07/2023]
Abstract
The development of facile methods for conjugating relevant probes, ligands, or delivery agents onto oligonucleotides (ONs) is highly desirable both for fundamental studies in chemical biology and for improving the pharmacology of ONs in medicinal chemistry. Numerous efforts have been focused on the introduction of bioorthogonal groups onto phosphoramidite building blocks, allowing the controlled chemical synthesis of reactive ONs for postsynthetic modifications. Among these building blocks, alkyne, cyclooctynes, trans-cyclooctene, and norbornene have been proved to be compatible with automated solid-phase chemistry. Herein, we present the development of novel 2'-functionalized nucleoside phosphoramidite monomers comprising bioorthogonal methylcyclopropene or sydnone moieties and their introduction for the first time to ON solid-phase synthesis. Traceless ON postsynthetic modifications with reactive complementary probes were successfully achieved through either inverse electron-demand Diels-Alder (iEDDA) reactions or strain-promoted sydnone-alkyne cycloaddition (SPSAC). These results expand the set of bioorthogonal phosphoramidite building blocks to generate ONs for postsynthetic labeling.
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Affiliation(s)
- Alexandra Bristiel
- Université Paris-Saclay, CNRS, Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182, 91405, Orsay, France
- Unité Drug Design Small Molecules, Institut de Recherche et Développement Servier Paris-Saclay, 22 route 128, Gif-sur-Yvette 91190, France
| | - Manon Cadinot
- Unité Drug Design Small Molecules, Institut de Recherche et Développement Servier Paris-Saclay, 22 route 128, Gif-sur-Yvette 91190, France
| | - Mathieu Pizzonero
- Unité Drug Design Small Molecules, Institut de Recherche et Développement Servier Paris-Saclay, 22 route 128, Gif-sur-Yvette 91190, France
| | - Frédéric Taran
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, Université Paris-Saclay, Gif-sur-Yvette 91191, France
| | - Dominique Urban
- Université Paris-Saclay, CNRS, Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182, 91405, Orsay, France
| | - Raphaël Guignard
- Unité Drug Design Small Molecules, Institut de Recherche et Développement Servier Paris-Saclay, 22 route 128, Gif-sur-Yvette 91190, France
| | - Dominique Guianvarc'h
- Université Paris-Saclay, CNRS, Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182, 91405, Orsay, France
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3
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Kufleitner M, Haiber LM, Wittmann V. Metabolic glycoengineering - exploring glycosylation with bioorthogonal chemistry. Chem Soc Rev 2023; 52:510-535. [PMID: 36537135 DOI: 10.1039/d2cs00764a] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Glycans are involved in numerous biological recognition events. Being secondary gene products, their labeling by genetic methods - comparable to GFP labeling of proteins - is not possible. To overcome this limitation, metabolic glycoengineering (MGE, also known as metabolic oligosaccharide engineering, MOE) has been developed. In this approach, cells or organisms are treated with synthetic carbohydrate derivatives that are modified with a chemical reporter group. In the cytosol, the compounds are metabolized and incorporated into newly synthesized glycoconjugates. Subsequently, the reporter groups can be further derivatized in a bioorthogonal ligation reaction. In this way, glycans can be visualized or isolated. Furthermore, diverse targeting strategies have been developed to direct drugs, nanoparticles, or whole cells to a desired location. This review summarizes research in the field of MGE carried out in recent years. After an introduction to the bioorthogonal ligation reactions that have been used in in connection with MGE, an overview on carbohydrate derivatives for MGE is given. The last part of the review focuses on the many applications of MGE starting from mammalian cells to experiments with animals and other organisms.
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Affiliation(s)
- Markus Kufleitner
- Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB), University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany.
| | - Lisa Maria Haiber
- Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB), University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany.
| | - Valentin Wittmann
- Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB), University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany.
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4
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Cui JF, Zhong WQ, Huang JM. Annulation Reaction of Quinoxalin-2(1 H)-ones Initiated by Electrochemical Decarboxylation of N-Arylglycines. J Org Chem 2023; 88:1147-1154. [PMID: 36630409 DOI: 10.1021/acs.joc.2c02654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A new methodology for the synthesis of tetrahydroimidazo[1,5-a]quinoxalin-4(5H)-ones has been accomplished through annulation of quinoxalin-2(1H)-ones initiated by electrochemical decarboxylation of N-arylglycines catalyzed by ferrocene. With a pair of oxidative and reductive processes occurring among the substrates and intermediates instead of on the electrodes, the electricity consumption was decreased.
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Affiliation(s)
- Jian-Feng Cui
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, Guangdong 510640, China
| | - Wei-Qiang Zhong
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, Guangdong 510640, China
| | - Jing-Mei Huang
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, Guangdong 510640, China
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5
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Su R, Xie K, Liang Y, Houk KN, Liu F. Fluoro, Trifluoromethyl, and Trifluoroacetyl Substituent Effects on Cycloaddition Reactivities: Computations and Analysis. J Org Chem 2023; 88:893-900. [PMID: 36583991 DOI: 10.1021/acs.joc.2c02264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The importance of fluoro and trifluoromethyl substituents in drug effectiveness prompted the computational exploration of fluorine-containing substituents in valuable synthetic cycloadditions. Diels-Alder or 1,3-dipolar cycloaddition reactions of typical reactants, cyclopentadiene, N-phenyldiazoacetamide, tetrazine, and N-phenylsydnone involving fluorine-containing substituents (F, CF3, and COCF3) were studied with M06-2X density functional theory. Inductive and conjugative effects influence normal and inverse electron-demand reactions differently. These results provide a guide to the design and use of cycloadditions for the introduction of fluoro and trifluoromethyl substituents in synthetic processes.
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Affiliation(s)
- Ruirui Su
- College of Sciences, Nanjing Agricultural University, Nanjing210095, China
| | - Kaili Xie
- College of Sciences, Nanjing Agricultural University, Nanjing210095, China
| | - Yong Liang
- School of Chemistry and Chemical Engineering, Nanjing University, Nanjing210023, China
| | - K N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California90095, United States
| | - Fang Liu
- College of Sciences, Nanjing Agricultural University, Nanjing210095, China
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6
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Zerbib S, Khouili M, Catto M, Bouissane L. Sydnone: Synthesis, Reactivity and Biological Activities. Curr Med Chem 2023; 30:1122-1144. [PMID: 35726409 DOI: 10.2174/0929867329666220620123050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 02/07/2022] [Accepted: 03/24/2022] [Indexed: 11/22/2022]
Abstract
Sydnones are among the most well-known mesoionic compounds. Since their synthesis in 1935 by Earl and Mecknay, numerous researches have shown that the chemical behavior, physical and biological properties of sydnones make them the most useful compounds in organic chemistry. Sydnones undergo thermal 1,3-dipolar cycloaddition reaction with dipolarophiles (alkynes or alkenes) to give exclusively derivatives containing a pyrazole moiety exhibiting numerous applications, such as pharmaceuticals and agrochemicals. However, the sydnone cycloaddition reaction with alkynes requires harsh conditions, like high temperatures and long reaction times, giving poor regioselectivity to the resulting products. To overcome these constraints, new reactions named CuSAC (Copper- Catalyzed Sydnone-Alkyne Cycloaddition) and SPSAC (Strain-Promoted Sydnone- Alkyne Cycloaddition) have been developed, leading to pyrazoles with interesting constant kinetics.
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Affiliation(s)
- Souad Zerbib
- Molecular Chemistry, Materials and Catalysis Laboratory, Faculty of Sciences and Technologies, Sultan Moulay Slimane University, BP 523, 23000 Beni-Mellal, Morocco
| | - Mostafa Khouili
- Molecular Chemistry, Materials and Catalysis Laboratory, Faculty of Sciences and Technologies, Sultan Moulay Slimane University, BP 523, 23000 Beni-Mellal, Morocco
| | - Marco Catto
- Department of Pharmacy-Pharmaceutical Sciences, University of Bari Aldo Moro, via E. Orabona 4, 70125 Bari, Italy
| | - Latifa Bouissane
- Molecular Chemistry, Materials and Catalysis Laboratory, Faculty of Sciences and Technologies, Sultan Moulay Slimane University, BP 523, 23000 Beni-Mellal, Morocco
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7
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Chinoy ZS, Friscourt F. Expanding the Strain‐Promoted 1,3‐Dipolar Cycloaddition Arsenal for a More Selective Bioorthogonal Labeling in Living Cells. Isr J Chem 2022. [DOI: 10.1002/ijch.202200055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Zoeisha S. Chinoy
- Institut Européen de Chimie et Biologie Université de Bordeaux 2 rue Robert Escarpit 33607 Pessac France
- Institut des Sciences Moléculaires CNRS UMR5255 33405 Talence France
| | - Frédéric Friscourt
- Institut Européen de Chimie et Biologie Université de Bordeaux 2 rue Robert Escarpit 33607 Pessac France
- Institut des Sciences Moléculaires CNRS UMR5255 33405 Talence France
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8
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Truong VX, Holloway JO, Barner-Kowollik C. Fluorescence turn-on by photoligation - bright opportunities for soft matter materials. Chem Sci 2022; 13:13280-13290. [PMID: 36507164 PMCID: PMC9682895 DOI: 10.1039/d2sc05403e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 10/25/2022] [Indexed: 12/15/2022] Open
Abstract
Photochemical ligation has become an indispensable tool for applications that require spatially addressable functionalisation, both in biology and materials science. Interestingly, a number of photochemical ligations result in fluorescent products, enabling a self-reporting function that provides almost instantaneous visual feedback of the reaction's progress and efficiency. Perhaps no other chemical reaction system allows control in space and time to the same extent, while concomitantly providing inherent feedback with regard to reaction success and location. While photoactivable fluorescent properties have been widely used in biology for imaging purposes, the expansion of the array of photochemical reactions has further enabled its utility in soft matter materials. Herein, we concisely summarise the key developments of fluorogenic-forming photoligation systems and their emerging applications in both biology and materials science. We further summarise the current challenges and future opportunities of exploiting fluorescent self-reporting reactions in a wide array of chemical disciplines.
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Affiliation(s)
- Vinh X. Truong
- Institute of Materials Research and Engineering (IMRE), Agency for Science, Technology and Research (A*STAR)2 Fusionopolis WaySingapore 138 634Singapore,School of Chemistry and Physics, Centre for Materials Science, Queensland University of Technology (QUT)BrisbaneQLD 4000Australia
| | - Joshua O. Holloway
- School of Chemistry and Physics, Centre for Materials Science, Queensland University of Technology (QUT)BrisbaneQLD 4000Australia
| | - Christopher Barner-Kowollik
- School of Chemistry and Physics, Centre for Materials Science, Queensland University of Technology (QUT)BrisbaneQLD 4000Australia,Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT)Hermann-von-Helmholtz-Platz 176344 Eggenstein-LeopoldshafenGermany
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9
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Kondengadan SM, Bansal S, Yang C, Liu D, Fultz Z, Wang B. Click chemistry and drug delivery: A bird’s-eye view. Acta Pharm Sin B 2022; 13:1990-2016. [DOI: 10.1016/j.apsb.2022.10.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 10/12/2022] [Accepted: 10/12/2022] [Indexed: 11/01/2022] Open
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10
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Feng M, Madegard L, Riomet M, Louis M, Champagne PA, Pieters G, Audisio D, Taran F. Selective chlorination of iminosydnones for fast release of amide, sulfonamide and urea-containing drugs. Chem Commun (Camb) 2022; 58:8500-8503. [PMID: 35797662 DOI: 10.1039/d2cc02784d] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein, we describe a methodology for iminosydnone chlorination and we demonstrate the high beneficial effect of this modification on the reactivity of these mesoionic dipoles in strain-promoted cycloaddition reactions. Exploiting their reaction with cyclooctynes, we used these new iminosydnones for bioorthogonal release of amide, urea and sulfonamide containing drugs. Notably, drugs containing a terminal amide function were released for the first time with good kinetic constants.
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Affiliation(s)
- Minghao Feng
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
| | - Léa Madegard
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
| | - Margaux Riomet
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
| | - Manon Louis
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
| | - Pier Alexandre Champagne
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, Newark, NJ, 07102, USA
| | - Grégory Pieters
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
| | - Davide Audisio
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
| | - Frédéric Taran
- CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), Université Paris Saclay, SCBM, 91191 Gif-sur-Yvette, France.
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11
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Gerke C, Zabala Gutierrez I, Méndez-González D, Cruz MCIDL, Mulero F, Jaque D, Rubio-Retama J. Clickable Albumin Nanoparticles for Pretargeted Drug Delivery toward PD-L1 Overexpressing Tumors in Combination Immunotherapy. Bioconjug Chem 2022; 33:821-828. [PMID: 35482594 PMCID: PMC9121340 DOI: 10.1021/acs.bioconjchem.2c00087] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
We present a simple methodology to design a pretargeted drug delivery system, based on clickable anti-programmed death ligand 1 (anti-PD-L1) antibodies (Abs) and clickable bovine serum albumin (BSA) nanoparticles (NPs). Pretargeted drug delivery is based on the decoupling of a targeting moiety and a drug-delivering vector which can then react in vivo after separate injections. This may be key to achieve active targeting of drug-delivering NPs toward cancerous tissue. In pretargeted approaches, drug-delivering NPs were observed to accumulate in a higher amount in the targeted tissue due to shielding-related enhanced blood circulation and size-related enhanced tissue penetration. In this work, BSA NPs were produced using the solvent precipitation methodology that renders colloidally stable NPs, which were subsequently functionalized with a clickable moiety based on chlorosydnone (Cl-Syd). Those reactive groups are able to specifically react with dibenzocyclooctyne (DBCO) groups in a click-type fashion, reaching second-order reaction rate constants as high as 1.9 M-1·s-1, which makes this reaction highly suitable for in vivo applications. The presence of reactive Cl-Syd was demonstrated by reacting the functionalized NPs with a DBCO-modified sulfo-cyanine-5 dye. With this reaction, it was possible to infer the number of reactive moieties per NPs. Finally, and with the aim of demonstrating the suitability of this system to be used in pretargeted strategies, functionalized fluorescent NPs were used to label H358 cells with a clickable anti-PD-L1 Ab, applying the reaction between Cl-Syd and DBCO as corresponding clickable groups. The results of these experiments demonstrate the bio-orthogonality of the system to perform the reaction in vitro, in a period as short as 15 min.
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Affiliation(s)
- Christoph Gerke
- Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid, 28040 Madrid, Spain.,Ramón y Cajal Institute for Health Research (IRYCIS), Ctra. Colmenar Viejo, 28034 Madrid, Spain
| | - Irene Zabala Gutierrez
- Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid, 28040 Madrid, Spain
| | - Diego Méndez-González
- Ramón y Cajal Institute for Health Research (IRYCIS), Ctra. Colmenar Viejo, 28034 Madrid, Spain.,Nanomaterials for Bioimaging Group, Departamento de Fisiología, Facultad de Medicina, Universidad Autónoma de Madrid, Avda. Arzobispo Morcillo 2, 28029 Madrid, Spain
| | - M Carmen Iglesias-de la Cruz
- Ramón y Cajal Institute for Health Research (IRYCIS), Ctra. Colmenar Viejo, 28034 Madrid, Spain.,Nanomaterials for Bioimaging Group, Departamento de Fisiología, Facultad de Medicina, Universidad Autónoma de Madrid, Avda. Arzobispo Morcillo 2, 28029 Madrid, Spain
| | - Francisca Mulero
- Molecular Imaging Unit, Spanish National Cancer Research Centre (CNIO), C. de Melchor Fernández Almagro 3, 28029 Madrid, Spain
| | - Daniel Jaque
- Ramón y Cajal Institute for Health Research (IRYCIS), Ctra. Colmenar Viejo, 28034 Madrid, Spain.,Nanomaterials for Bioimaging Group, Departamento de Fisiología, Facultad de Medicina, Universidad Autónoma de Madrid, Avda. Arzobispo Morcillo 2, 28029 Madrid, Spain.,Departamento de Física de Materiales, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Jorge Rubio-Retama
- Department of Chemistry in Pharmaceutical Sciences, Faculty of Pharmacy, Complutense University of Madrid, 28040 Madrid, Spain.,Ramón y Cajal Institute for Health Research (IRYCIS), Ctra. Colmenar Viejo, 28034 Madrid, Spain
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12
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Kumar GS, Racioppi S, Zurek E, Lin Q. Superfast Tetrazole-BCN Cycloaddition Reaction for Bioorthogonal Protein Labeling on Live Cells. J Am Chem Soc 2022; 144:57-62. [PMID: 34964645 PMCID: PMC8982153 DOI: 10.1021/jacs.1c10354] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Here we report the design of a superfast bioorthogonal ligation reactant pair comprising a sterically shielded, sulfonated tetrazole and bicyclo[6.1.0]non-4-yn-9-ylmethanol (BCN). The design involves placing a pair of water-soluble N-sulfonylpyrrole substituents at the C-phenyl ring of diphenyltetrazoles to favor the photoinduced cycloaddition reaction over the competing nucleophilic additions. First-principles computations provide vital insights into the origin of the tetrazole-BCN cycloaddition's superior kinetics compared to the tetrazole-spirohexene cycloaddition. The tetrazole-BCN cycloaddition also enabled rapid bioorthogonal labeling of glucagon receptors on live cells in as little as 15 s.
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Affiliation(s)
- Gangam Srikanth Kumar
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
| | - Stefano Racioppi
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
| | - Eva Zurek
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
| | - Qing Lin
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
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13
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Krell K, Pfeuffer B, Rönicke F, Chinoy ZS, Favre C, Friscourt F, Wagenknecht HA. Fast and Efficient Postsynthetic DNA Labeling in Cells by Means of Strain-Promoted Sydnone-Alkyne Cycloadditions. Chemistry 2021; 27:16093-16097. [PMID: 34633713 PMCID: PMC9297951 DOI: 10.1002/chem.202103026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Indexed: 12/16/2022]
Abstract
Sydnones are highly stable mesoionic 1,3‐dipoles that react with cyclooctynes through strain‐promoted sydnone‐alkyne cycloaddition (SPSAC). Although sydnones have been shown to be valuable bioorthogonal chemical reporters for the labeling of proteins and complex glycans, nucleic acids have not yet been tagged by SPSAC. Evaluation of SPSAC kinetics with model substrates showed fast reactions with cyclooctyne probes (up to k=0.59 M−1 s−1), and two different sydnones were effectively incorporated into both 2’‐deoxyuridines at position 5, and 7‐deaza‐2’‐deoxyadenosines at position 7. These modified nucleosides were synthetically incorporated into single‐stranded DNAs, which were successfully postsynthetically labeled with cyclooctyne probes both in vitro and in cells. These results show that sydnones are versatile bioorthogonal tags and have the premise to become essential tools for tracking DNA and potentially RNA in living cells.
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Affiliation(s)
- Katja Krell
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
| | - Bastian Pfeuffer
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
| | - Franziska Rönicke
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
| | - Zoeisha S Chinoy
- Institut Européen de Chimie et Biologie and ISM CNRS UMR5255, Université de Bordeaux, 2 Rue Robert Escarpit, 33607, Pessac, France
| | - Camille Favre
- Institut Européen de Chimie et Biologie and ISM CNRS UMR5255, Université de Bordeaux, 2 Rue Robert Escarpit, 33607, Pessac, France
| | - Frédéric Friscourt
- Institut Européen de Chimie et Biologie and ISM CNRS UMR5255, Université de Bordeaux, 2 Rue Robert Escarpit, 33607, Pessac, France
| | - Hans-Achim Wagenknecht
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131, Karlsruhe, Germany
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14
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Narayanam MK, Lai BT, Loredo JM, Wilson JA, Eliasen AM, LaBerge NA, Nason M, Cantu AL, Luton BK, Xu S, Agnew HD, Murphy JM. Positron Emission Tomography Tracer Design of Targeted Synthetic Peptides via 18F-Sydnone Alkyne Cycloaddition. Bioconjug Chem 2021; 32:2073-2082. [PMID: 34415731 DOI: 10.1021/acs.bioconjchem.1c00379] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Chemically synthesized, small peptides that bind with high affinity and specificity to CD8-expressing (CD8+) tumor-infiltrating T cells, yet retain the desirable characteristics of small molecules, hold valuable potential for diagnostic molecular imaging of immune response. Here, we report the development of 18F-labeled peptides targeting human CD8α with nanomolar affinity via the strain-promoted sydnone-alkyne cycloaddition with 4-[18F]fluorophenyl sydnone. The 18F-sydnone is produced in one step, in high radiochemical yield, and the peptide labeling proceeds rapidly. A hydrophilic chemical linker results in a tracer with favorable pharmacokinetic properties and improved image contrast, as demonstrated by in vivo PET imaging studies.
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Affiliation(s)
- Maruthi Kumar Narayanam
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Bert T Lai
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Jacquie Malette Loredo
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Jeré A Wilson
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Anders M Eliasen
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Nicole A LaBerge
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Malley Nason
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Annabelle L Cantu
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Breanna K Luton
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Shili Xu
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California 90095, United States
| | - Heather D Agnew
- Indi Molecular, Inc., 6162 Bristol Parkway, Culver City, California 90230, United States
| | - Jennifer M Murphy
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California 90095, United States
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15
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Abstract
The merging of click chemistry with discrete photochemical processes has led to the creation of a new class of click reactions, collectively known as photoclick chemistry. These light-triggered click reactions allow the synthesis of diverse organic structures in a rapid and precise manner under mild conditions. Because light offers unparalleled spatiotemporal control over the generation of the reactive intermediates, photoclick chemistry has become an indispensable tool for a wide range of spatially addressable applications including surface functionalization, polymer conjugation and cross-linking, and biomolecular labeling in the native cellular environment. Over the past decade, a growing number of photoclick reactions have been developed, especially those based on the 1,3-dipolar cycloadditions and Diels-Alder reactions owing to their excellent reaction kinetics, selectivity, and biocompatibility. This review summarizes the recent advances in the development of photoclick reactions and their applications in chemical biology and materials science. A particular emphasis is placed on the historical contexts and mechanistic insights into each of the selected reactions. The in-depth discussion presented here should stimulate further development of the field, including the design of new photoactivation modalities, the continuous expansion of λ-orthogonal tandem photoclick chemistry, and the innovative use of these unique tools in bioconjugation and nanomaterial synthesis.
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Affiliation(s)
- Gangam Srikanth Kumar
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
| | - Qing Lin
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
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16
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Porte K, Riomet M, Figliola C, Audisio D, Taran F. Click and Bio-Orthogonal Reactions with Mesoionic Compounds. Chem Rev 2021; 121:6718-6743. [PMID: 33238101 DOI: 10.1021/acs.chemrev.0c00806] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Click and bio-orthogonal reactions are dominated by cycloaddition reactions in general and 1,3-dipolar cycloadditions in particular. Among the dipoles routinely used for click chemistry, azides, nitrones, isonitriles, and nitrile oxides are the most popular. This review is focused on the emerging click chemistry that uses mesoionic compounds as dipole partners. Mesoionics are a very old family of molecules, but their use as reactants for click and bio-orthogonal chemistry is quite recent. The facility to derivatize these dipoles and to tune their reactivity toward cycloaddition reactions makes mesoionics an attractive opportunity for future click chemistry development. In addition, some compounds from this family are able to undergo click-and-release reactions, finding interesting applications in cells, as well as in animals. This review covers the synthetic access to main mesoionics, their reaction with dipolarophiles, and recent applications in chemical biology and heterocycle synthesis.
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Affiliation(s)
- Karine Porte
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Margaux Riomet
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Carlotta Figliola
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Davide Audisio
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Frédéric Taran
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
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17
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Deb T, Tu J, Franzini RM. Mechanisms and Substituent Effects of Metal-Free Bioorthogonal Reactions. Chem Rev 2021; 121:6850-6914. [DOI: 10.1021/acs.chemrev.0c01013] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Titas Deb
- Department of Medicinal Chemistry, University of Utah, 30 S 2000 E, Salt Lake City, Utah 84112, United States
| | - Julian Tu
- Department of Medicinal Chemistry, University of Utah, 30 S 2000 E, Salt Lake City, Utah 84112, United States
| | - Raphael M. Franzini
- Department of Medicinal Chemistry, University of Utah, 30 S 2000 E, Salt Lake City, Utah 84112, United States
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18
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Affiliation(s)
- Pavel K. Mykhailiuk
- Enamine Ltd., Chervonotkatska 78, 02094 Kyiv, Ukraine
- Chemistry Department, Taras Shevchenko National University of Kyiv, Volodymyrska 64, 01601 Kyiv, Ukraine
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19
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20
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Adachi K, Meguro T, Sakata Y, Igawa K, Tomooka K, Hosoya T, Yoshida S. Selective strain-promoted azide-alkyne cycloadditions through transient protection of bicyclo[6.1.0]nonynes with silver or gold. Chem Commun (Camb) 2020; 56:9823-9826. [PMID: 32716445 DOI: 10.1039/d0cc04606j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Complexation of bicyclo[6.1.0]nonynes with a cationic silver or gold salt results in protection from a click reaction with azides. The cycloalkyne protection using the silver or gold salt enables selective strain-promoted azide-alkyne cycloadditions of diynes keeping the bicyclo[6.1.0]nonyne moiety unreacted.
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Affiliation(s)
- Keisuke Adachi
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
| | - Tomohiro Meguro
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
| | - Yuki Sakata
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
| | - Kazunobu Igawa
- Institute for Materials Chemistry and Engineering, Kyushu University, 6-1 Kasuga-koen, Kasuga, Fukuoka 816-8580, Japan
| | - Katsuhiko Tomooka
- Institute for Materials Chemistry and Engineering, Kyushu University, 6-1 Kasuga-koen, Kasuga, Fukuoka 816-8580, Japan
| | - Takamitsu Hosoya
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
| | - Suguru Yoshida
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
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21
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Nguyen SS, Prescher JA. Developing bioorthogonal probes to span a spectrum of reactivities. Nat Rev Chem 2020; 4:476-489. [PMID: 34291176 DOI: 10.1038/s41570-020-0205-0] [Citation(s) in RCA: 96] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Bioorthogonal chemistries enable researchers to interrogate biomolecules in living systems. These reactions are highly selective and biocompatible and can be performed in many complex environments. However, like any organic transformation, there is no perfect bioorthogonal reaction. Choosing the "best fit" for a desired application is critical. Correspondingly, there must be a variety of chemistries-spanning a spectrum of rates and other features-to choose from. Over the past few years, significant strides have been made towards not only expanding the number of bioorthogonal chemistries, but also fine-tuning existing reactions for particular applications. In this Review, we highlight recent advances in bioorthogonal reaction development, focusing on how physical organic chemistry principles have guided probe design. The continued expansion of this toolset will provide more precisely tuned reagents for manipulating bonds in distinct environments.
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Affiliation(s)
- Sean S Nguyen
- Departments of Chemistry, University of California, Irvine, California 92697, United States
| | - Jennifer A Prescher
- Departments of Chemistry, University of California, Irvine, California 92697, United States.,Molecular Biology & Biochemistry, University of California, Irvine, California 92697, United States.,Pharmaceutical Sciences, University of California, Irvine, California 92697, United States
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22
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Shum J, Zhang P, Lee LC, Lo KK. Bioorthogonal Phosphorogenic Rhenium(I) Polypyridine Sydnone Complexes for Specific Lysosome Labeling. Chempluschem 2020; 85:1374-1378. [DOI: 10.1002/cplu.202000029] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 03/04/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Justin Shum
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
| | - Pei‐Zhi Zhang
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
| | - Lawrence Cho‐Cheung Lee
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
| | - Kenneth Kam‐Wing Lo
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
- State Key Laboratory of Terahertz and Millimeter WavesCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
- Center of Functional PhotonicsCity University of Hong Kong Tat Chee Avenue Kowloon Hong Kong P. R. China
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23
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Lo KKW. Molecular Design of Bioorthogonal Probes and Imaging Reagents Derived from Photofunctional Transition Metal Complexes. Acc Chem Res 2020; 53:32-44. [PMID: 31916746 DOI: 10.1021/acs.accounts.9b00416] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
For more than 15 years, bioorthogonal chemistry has received increasing attention due to its successful applications in the detection and imaging of biomolecules in their native biological environments. The method typically proceeds with the incorporation of a biological substrate appended with a bioorthogonal functional group (chemical reporter), followed by the introduction of the substrate to biological systems. Biomolecules containing the substrate are then recognized by an exogenously delivered bioorthogonal probe. Despite the fact that many useful chemical reporters and bioorthogonal reactions have been developed, most of the bioorthogonal probes reported thus far are fluorescent dyes. A limitation is that stringent washing is required due to the interference caused by the background fluorescence of unreacted probes. Thus, fluorogenic probes with turn-on emission properties upon bioorthogonal labeling have been designed as an alternative strategy. These probes are highly appealing because excellent images can be obtained without the need for washing steps. Nearly all fluorogenic bioorthogonal probes designed are essentially organic dyes, their emission is limited to fluorescence, and the utilization of the probes is confined to bioimaging applications. Recently, there has been a growing interest in the bioimaging and therapeutic applications of luminescent inorganic and organometallic transition metal complexes due to their intriguing photophysical and photochemical properties, high membrane permeability, controllable cellular uptake, intracellular localization, and cytotoxicity. We anticipate that photofunctional transition metal complexes can be exploited as valuable bioorthogonal probes due to these appealing advantages. In this Account, we introduce the molecular design, photophysical and photochemical properties, and biological applications of various bioorthogonal probes and imaging reagents based on photofunctional transition metal complexes. The presence of a cationic metal center significantly enhances the bioorthogonal reactivity of the probes, yet their stability in aqueous solutions can be maintained. Interestingly, some of these metal complexes are strategically modified to display phosphorogenic properties, that is, phosphorescence turn-on upon bioorthogonal labeling reactions. Importantly, these probes not only exhibit favorable photophysical properties after bioorthogonal labeling, but also efficient photoinduced singlet oxygen (1O2) generation. This interesting bioorthogonal reaction-triggered photosensitization capability allows the modulation of 1O2 generation efficiency and contributes to the development of controllable photocytotoxic agents. The exploration of transition metal complex-based probes not only significantly widens the scope of bioorthogonal labeling but also further highlights the unique advantages of these complexes in the design of theranostic reagents. The development of these innovative reagents is expected to contribute to the basic understanding of biological processes in living systems and provide exciting opportunities for new diagnostic and therapeutic applications.
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Affiliation(s)
- Kenneth Kam-Wing Lo
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong, P. R. China
- State Key Laboratory of Terahertz and Millimeter Waves, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong, P. R. China
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24
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Cherepanov IA, Moiseev SK. Recent developments in the chemistry of sydnones and sydnone imines. ADVANCES IN HETEROCYCLIC CHEMISTRY 2020. [DOI: 10.1016/bs.aihch.2019.11.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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25
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Gimadiev T, Klimchuk O, Nugmanov R, Madzhidov T, Varnek A. Sydnone-alkyne cycloaddition: Which factors are responsible for reaction rate ? J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.126897] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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26
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Lakeland CP, Watson DW, Harrity JPA. Exploiting Synergistic Catalysis for an Ambient Temperature Photocycloaddition to Pyrazoles. Chemistry 2019; 26:155-159. [PMID: 31657486 DOI: 10.1002/chem.201904210] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 10/16/2019] [Indexed: 12/19/2022]
Abstract
Sydnone-based cycloaddition reactions are a versatile platform for pyrazole synthesis, however they operate under harsh conditions (high temperature and long reaction times). Herein we report a strategy that addresses this limitation utilizing the synergistic combination of organocatalysis and visible-light photocatalysis. This new approach proceeds under ambient conditions and with excellent levels of regiocontrol. Mechanistic studies suggest that photoactivation of sydnones, rather than enamines, is key to the successful implementation of this process.
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Affiliation(s)
| | - David W Watson
- Chemistry, Oncology R&D, AstraZeneca, Cambridge, CB10 1XL, UK
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27
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Salmain M, Fischer-Durand N, Rudolf B. Bioorthogonal Conjugation of Transition Organometallic Complexes to Peptides and Proteins: Strategies and Applications. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900810] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Michèle Salmain
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; 4 place Jussieu 75005 Paris France
| | - Nathalie Fischer-Durand
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; 4 place Jussieu 75005 Paris France
| | - Bogna Rudolf
- Department of Organic Chemistry; Faculty of Chemistry; University of Lodz; 91-403 Lodz Poland
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28
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Zhilin ES, Bystrov DM, Ananyev IV, Fershtat LL, Makhova NN. Straightforward Access to the Nitric Oxide Donor Azasydnone Scaffold by Cascade Reactions of Amines. Chemistry 2019; 25:14284-14289. [DOI: 10.1002/chem.201903526] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Indexed: 12/15/2022]
Affiliation(s)
- Egor S. Zhilin
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences Leninsky Prospect 47 119991 Moscow Russia
| | - Dmitry M. Bystrov
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences Leninsky Prospect 47 119991 Moscow Russia
| | - Ivan V. Ananyev
- A. N. Nesmeyanov Institute of Organoelement CompoundsRussian Academy of Sciences Vavilova str. 28 119991 Moscow Russia
| | - Leonid L. Fershtat
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences Leninsky Prospect 47 119991 Moscow Russia
| | - Nina N. Makhova
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences Leninsky Prospect 47 119991 Moscow Russia
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29
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Kumar RA, Pattanayak MR, Yen‐Pon E, Eliyan J, Porte K, Bernard S, Riomet M, Thuéry P, Audisio D, Taran F. Strain‐Promoted 1,3‐Dithiolium‐4‐olates–Alkyne Cycloaddition. Angew Chem Int Ed Engl 2019; 58:14544-14548. [DOI: 10.1002/anie.201908052] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 07/30/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
- SRM Research Institute Department of Chemistry SRM Institute of Science and Technology, Kattankulathur 603203 Chennai India
| | - Manas R. Pattanayak
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Expédite Yen‐Pon
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Jijy Eliyan
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Pierre Thuéry
- NIMBE CEA CNRS Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
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30
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Kumar RA, Pattanayak MR, Yen‐Pon E, Eliyan J, Porte K, Bernard S, Riomet M, Thuéry P, Audisio D, Taran F. Strain‐Promoted 1,3‐Dithiolium‐4‐olates–Alkyne Cycloaddition. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908052] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
- SRM Research Institute Department of Chemistry SRM Institute of Science and Technology, Kattankulathur 603203 Chennai India
| | - Manas R. Pattanayak
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Expédite Yen‐Pon
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Jijy Eliyan
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Pierre Thuéry
- NIMBE CEA CNRS Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage (SCBM), CEA/DRF/JOLIOT Université Paris-Saclay F-91191 Gif-sur-Yvette France
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31
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Halogen effects on phenylethynyl palladium(II) complexes for living polymerization of isocyanides: a combined experimental and computational investigation. Sci China Chem 2019. [DOI: 10.1007/s11426-018-9415-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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32
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Richard M, Truillet C, Tran VL, Liu H, Porte K, Audisio D, Roche M, Jego B, Cholet S, Fenaille F, Kuhnast B, Taran F, Specklin S. New fluorine-18 pretargeting PET imaging by bioorthogonal chlorosydnone–cycloalkyne click reaction. Chem Commun (Camb) 2019; 55:10400-10403. [DOI: 10.1039/c9cc05486c] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A PET pretargeting approach using strain-promoted sydnone–alkyne cycloaddition.
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Affiliation(s)
- Mylène Richard
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
| | - Charles Truillet
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
| | - Vu Long Tran
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
| | - Hui Liu
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA, Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Karine Porte
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA, Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA, Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Mélanie Roche
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
| | - Benoit Jego
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
| | - Sophie Cholet
- Service de Pharmacologie et d’Immunoanalyse (SPI)
- CEA/DRF/JOLIOT
- Université Paris Saclay
- F-91191 Gif-sur-Yvette
- France
| | - François Fenaille
- Service de Pharmacologie et d’Immunoanalyse (SPI)
- CEA/DRF/JOLIOT
- Université Paris Saclay
- F-91191 Gif-sur-Yvette
- France
| | - Bertrand Kuhnast
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA, Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Simon Specklin
- UMR 1023 IMIV
- Service Hospitalier Frédéric Joliot (SHFJ)
- CEA, Inserm
- Université Paris Sud, CNRS
- Université Paris-Saclay
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33
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Zhang X, Wu X, Jiang S, Gao J, Yao Z, Deng J, Zhang L, Yu Z. Photo-accelerated “click” reaction between diarylsydnones and ring-strained alkynes for bioorthogonal ligation. Chem Commun (Camb) 2019; 55:7187-7190. [DOI: 10.1039/c9cc02882j] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel photo-click ligation reaction between diarylsydnones and ring-strained alkynes, exhibiting decent bioorthogonality, was established under 405 nm light irradiation.
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Affiliation(s)
- Xiaocui Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Xueting Wu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Shichao Jiang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Jingshuo Gao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Zhuojun Yao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Jiajie Deng
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Linmeng Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu (610064)
- China
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34
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Plougastel L, Pattanayak MR, Riomet M, Bregant S, Sallustrau A, Nothisen M, Wagner A, Audisio D, Taran F. Sydnone-based turn-on fluorogenic probes for no-wash protein labeling and in-cell imaging. Chem Commun (Camb) 2019; 55:4582-4585. [DOI: 10.1039/c9cc01458f] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Fluorogenic sydnone-based turn-on probes allow efficient labeling of proteins and cell imaging through a bioorthogonal strained promoted sydnone–alkyne cycloaddition reaction.
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Affiliation(s)
- Lucie Plougastel
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Manas R. Pattanayak
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Sarah Bregant
- Service d'Ingénierie Moléculaire des Protéines DRF-JOLIOT-SIMOPRO
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Antoine Sallustrau
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Marc Nothisen
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS
- Université de Strasbourg
- Illkirch
- France
| | - Alain Wagner
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS
- Université de Strasbourg
- Illkirch
- France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
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35
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Yao Z, Wu X, Zhang X, Xiong Q, Jiang S, Yu Z. Synthesis and evaluation of photo-activatable β-diarylsydnone-l-alanines for fluorogenic photo-click cyclization of peptides. Org Biomol Chem 2019; 17:6777-6781. [DOI: 10.1039/c9ob00898e] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
β-Diarylsydnone-l-alanines were designed and introduced into peptides allowing photo-cyclization only in phosphate containing buffer with concomitant fluorescence generation in live cells.
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Affiliation(s)
- Zhuojun Yao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Xueting Wu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Xiaocui Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Qin Xiong
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Shichao Jiang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- P. R. China
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36
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Lee LC, Cheung HM, Liu H, Lo KK. Exploitation of Environment‐Sensitive Luminophores in the Design of Sydnone‐Based Bioorthogonal Imaging Reagents. Chemistry 2018; 24:14064-14068. [DOI: 10.1002/chem.201803452] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 07/10/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Lawrence Cho‐Cheung Lee
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon, Hong Kong P. R. China
| | - Hugo Man‐Hin Cheung
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon, Hong Kong P. R. China
| | - Hua‐Wei Liu
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon, Hong Kong P. R. China
| | - Kenneth Kam‐Wing Lo
- Department of ChemistryCity University of Hong Kong Tat Chee Avenue Kowloon, Hong Kong P. R. China
- State Key Laboratory of Millimeter WavesCity University of Hong Kong Tat Chee Avenue Kowloon, Hong Kong P. R. China
- Center of Functional PhotonicsCity University of Hong Kong Tat Chee Avenue Kowloon, Hong Kong P. R. China
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37
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Favre C, Friscourt F. Fluorogenic Sydnone-Modified Coumarins Switched-On by Copper-Free Click Chemistry. Org Lett 2018; 20:4213-4217. [PMID: 29995429 DOI: 10.1021/acs.orglett.8b01587] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The synthesis, photophysical characterization, and biochemical application of sydnone-modified coumarins, a novel class of fluorogenic clickable reagents, are reported. The sydnone moiety, a stable aromatic 1,3-dipole, efficiently quenched the fluorescence of coumarin, which could be restored, with a 132-fold enhancement, upon cycloadditions with cyclooctynes, thereby expanding the fluorogenic click toolbox. TD-DFT calculations suggest that the fluorescence quenching of the sydnone-modified coumarins is likely due to the presence of an energetically low-lying nonemissive charge-separated state.
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Affiliation(s)
- Camille Favre
- Institut Européen de Chimie et Biologie , Université de Bordeaux , 2 rue Robert Escarpit , 33607 Pessac , France.,Institut de Neurosciences Cognitives et Intégratives d'Aquitaine , CNRS UMR5287 , Bordeaux , France
| | - Frédéric Friscourt
- Institut Européen de Chimie et Biologie , Université de Bordeaux , 2 rue Robert Escarpit , 33607 Pessac , France.,Institut de Neurosciences Cognitives et Intégratives d'Aquitaine , CNRS UMR5287 , Bordeaux , France
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38
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Hladíková V, Váňa J, Hanusek J. [3 + 2]-Cycloaddition reaction of sydnones with alkynes. Beilstein J Org Chem 2018; 14:1317-1348. [PMID: 29977399 PMCID: PMC6009199 DOI: 10.3762/bjoc.14.113] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Accepted: 05/11/2018] [Indexed: 12/15/2022] Open
Abstract
This review covers all known examples of [3 + 2]-cycloaddition between sydnones and both terminal as well as internal alkynes/cycloalkynes taken from literature since its discovery by Huisgen in 1962 up to the current date. Except enumeration of synthetic applications it also covers mechanistic studies, catalysis, effects of substituents and reaction conditions influencing reaction rate and regioselectivity.
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Affiliation(s)
- Veronika Hladíková
- Institute of Organic Chemistry and Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Jiří Váňa
- Institute of Organic Chemistry and Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Jiří Hanusek
- Institute of Organic Chemistry and Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
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39
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Qin LH, Hu W, Long YQ. Bioorthogonal chemistry: Optimization and application updates during 2013–2017. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.04.058] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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40
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Riomet M, Decuypere E, Porte K, Bernard S, Plougastel L, Kolodych S, Audisio D, Taran F. Design and Synthesis of Iminosydnones for Fast Click and Release Reactions with Cycloalkynes. Chemistry 2018; 24:8535-8541. [DOI: 10.1002/chem.201801163] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Revised: 04/04/2018] [Indexed: 12/22/2022]
Affiliation(s)
- Margaux Riomet
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Sergii Kolodych
- Syndivia SAS; 650 Boulevard Gonthier d'Andernach 67400 Illkirch France
| | - Davide Audisio
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
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41
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Tao H, Liu F, Zeng R, Shao Z, Zou L, Cao Y, Murphy JM, Houk KN, Liang Y. Origins of halogen effects in bioorthogonal sydnone cycloadditions. Chem Commun (Camb) 2018; 54:5082-5085. [PMID: 29707720 PMCID: PMC5953849 DOI: 10.1039/c8cc02128g] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Halogen substituents increase sydnone cycloaddition reactivities substantially. Fluoro-sydnones are superior to bromo- and chloro-sydnones, and can achieve extremely high second-order rate constants with strained alkynes. Computational studies have revealed the fluorine substituent increases the reactivity of sydnone mainly by lowering its distortion energy.
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Affiliation(s)
- Huimin Tao
- State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China.
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42
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Bernard S, Kumar RA, Porte K, Thuéry P, Taran F, Audisio D. A Practical Synthesis of Valuable Strained Eight-Membered-Ring Derivatives for Click Chemistry. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800139] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sabrina Bernard
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM; CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM; CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
- SRM Institute of Science and Technology; Department of Chemistry; SRM University; 603203 (D.t.) Kancheepuram Kattankulathur India
| | - Karine Porte
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM; CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Pierre Thuéry
- NIMBE; CEA; CNRS; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM; CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM; CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
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43
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Decuypère E, Plougastel L, Audisio D, Taran F. Sydnone-alkyne cycloaddition: applications in synthesis and bioconjugation. Chem Commun (Camb) 2018; 53:11515-11527. [PMID: 28959814 DOI: 10.1039/c7cc06405e] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Sydnones are among the most popular mesoionic compounds studied so far for cycloaddition reactions. However, despite their good chemical stability and versatility, only a limited number of research groups have worked on their chemistry and use in organic synthesis. This feature article aims at providing an overview of the most recent developments in sydnone-alkyne cycloadditions, with particular attention on the strategies that allow us to achieving high regiocontrol and milder reaction conditions. The recent discovery that this dipole is able to undergo click and biorthogonal reactions with cycloalkynes may stimulate renewed interest from the scientific community. Given the high potential and flexibility of this family of mesoionics, we believe that major developments are to be expected both in terms of organic synthetic methodologies and biorthogonal chemistry applications in the field of chemical biology.
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Affiliation(s)
- Elodie Decuypère
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM, CEA, Université Paris-Saclay, 91191 Gif-sur-Yvette, France.
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44
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Favre C, de Cremoux L, Badaut J, Friscourt F. Sydnone Reporters for Highly Fluorogenic Copper-Free Click Ligations. J Org Chem 2018; 83:2058-2066. [DOI: 10.1021/acs.joc.7b03004] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Camille Favre
- Institut Européen de Chimie et Biologie, Université de Bordeaux, 2 rue Robert Escarpit, 33607 Pessac, France
- Institut de Neurosciences Cognitives et Intégratives d’Aquitaine, CNRS UMR5287, Bordeaux, France
| | - Lucie de Cremoux
- Institut Européen de Chimie et Biologie, Université de Bordeaux, 2 rue Robert Escarpit, 33607 Pessac, France
- Institut de Neurosciences Cognitives et Intégratives d’Aquitaine, CNRS UMR5287, Bordeaux, France
| | - Jerome Badaut
- Institut de Neurosciences Cognitives et Intégratives d’Aquitaine, CNRS UMR5287, Bordeaux, France
- Basic
Science Department, Loma Linda University, Loma Linda, California 92350, United States
| | - Frédéric Friscourt
- Institut Européen de Chimie et Biologie, Université de Bordeaux, 2 rue Robert Escarpit, 33607 Pessac, France
- Institut de Neurosciences Cognitives et Intégratives d’Aquitaine, CNRS UMR5287, Bordeaux, France
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45
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Brown AW. Recent Developments in the Chemistry of Pyrazoles. ADVANCES IN HETEROCYCLIC CHEMISTRY 2018. [DOI: 10.1016/bs.aihch.2018.02.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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46
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Decuypère E, Riomet M, Sallustrau A, Bregant S, Thai R, Pieters G, Clavier G, Audisio D, Taran F. Sydnone-coumarins as clickable turn-on fluorescent sensors for molecular imaging. Chem Commun (Camb) 2018; 54:10758-10761. [DOI: 10.1039/c8cc06070c] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Sydnone-coumarin compounds are interesting turn-on fluorogenic probes for protein labeling.
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Affiliation(s)
- Elodie Decuypère
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Antoine Sallustrau
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Sarah Bregant
- Service d'Ingénierie Moléculaire des Protéines DRF-JOLIOT-SIMOPRO, CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Robert Thai
- Service d'Ingénierie Moléculaire des Protéines DRF-JOLIOT-SIMOPRO, CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Grégory Pieters
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Gilles Clavier
- PPSM, ENS Cachan
- CNRS
- Université Paris-Saclay
- 94235 Cachan
- France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage DRF-JOLIOT-SCBM
- CEA
- Université Paris-Saclay
- 91191 Gif-sur-Yvette
- France
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47
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Almendros P, Yanai H, Hoshikawa S, Aragoncillo C, Lázaro-Milla C, Toledano-Pinedo M, Matsumoto T, Alcaide B. Transition metal-free controlled synthesis of bis[(trifluoromethyl)sulfonyl]ethyl-decorated heterocycles. Org Chem Front 2018. [DOI: 10.1039/c8qo00955d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The metal- and irradiation-free C–H bis(triflyl)ethylation reactions of a variety of heterocycles including marketed drugs have been accomplished.
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Affiliation(s)
- Pedro Almendros
- Instituto de Química Orgánica General
- Consejo Superior de Investigaciones Científicas
- IQOG-CSIC
- 28006 Madrid
- Spain
| | - Hikaru Yanai
- School of Pharmacy
- Tokyo University of Pharmacy and Life Sciences
- Tokyo 192-0392
- Japan
| | - Shoki Hoshikawa
- School of Pharmacy
- Tokyo University of Pharmacy and Life Sciences
- Tokyo 192-0392
- Japan
| | - Cristina Aragoncillo
- Grupo de Lactamas y Heterociclos Bioactivos
- Departamento de Química Orgánica I
- Unidad Asociada al CSIC
- Facultad de Química
- Universidad Complutense de Madrid
| | - Carlos Lázaro-Milla
- Grupo de Lactamas y Heterociclos Bioactivos
- Departamento de Química Orgánica I
- Unidad Asociada al CSIC
- Facultad de Química
- Universidad Complutense de Madrid
| | - Mireia Toledano-Pinedo
- Grupo de Lactamas y Heterociclos Bioactivos
- Departamento de Química Orgánica I
- Unidad Asociada al CSIC
- Facultad de Química
- Universidad Complutense de Madrid
| | - Takashi Matsumoto
- School of Pharmacy
- Tokyo University of Pharmacy and Life Sciences
- Tokyo 192-0392
- Japan
| | - Benito Alcaide
- Grupo de Lactamas y Heterociclos Bioactivos
- Departamento de Química Orgánica I
- Unidad Asociada al CSIC
- Facultad de Química
- Universidad Complutense de Madrid
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48
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Bernard S, Audisio D, Riomet M, Bregant S, Sallustrau A, Plougastel L, Decuypere E, Gabillet S, Kumar RA, Elyian J, Trinh MN, Koniev O, Wagner A, Kolodych S, Taran F. Bioorthogonal Click and Release Reaction of Iminosydnones with Cycloalkynes. Angew Chem Int Ed Engl 2017; 56:15612-15616. [DOI: 10.1002/anie.201708790] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Indexed: 12/21/2022]
Affiliation(s)
- Sabrina Bernard
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Sarah Bregant
- Service d'Ingénierie Moléculaire des Protéines, DRF-JOLIOT-SIMOPRO, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Antoine Sallustrau
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Sandra Gabillet
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Jijy Elyian
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Minh Nguyet Trinh
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS-UdS; 67401 Illkirch France
| | - Oleksandr Koniev
- Syndivia SAS, 650 Boulevard Gonthier d'Andernach; 67400 Illkirch France
| | - Alain Wagner
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS-UdS; 67401 Illkirch France
| | - Sergii Kolodych
- Syndivia SAS, 650 Boulevard Gonthier d'Andernach; 67400 Illkirch France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
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49
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Bernard S, Audisio D, Riomet M, Bregant S, Sallustrau A, Plougastel L, Decuypere E, Gabillet S, Kumar RA, Elyian J, Trinh MN, Koniev O, Wagner A, Kolodych S, Taran F. Bioorthogonal Click and Release Reaction of Iminosydnones with Cycloalkynes. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201708790] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Sabrina Bernard
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Davide Audisio
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Margaux Riomet
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Sarah Bregant
- Service d'Ingénierie Moléculaire des Protéines, DRF-JOLIOT-SIMOPRO, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Antoine Sallustrau
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Sandra Gabillet
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Ramar Arun Kumar
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Jijy Elyian
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
| | - Minh Nguyet Trinh
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS-UdS; 67401 Illkirch France
| | - Oleksandr Koniev
- Syndivia SAS, 650 Boulevard Gonthier d'Andernach; 67400 Illkirch France
| | - Alain Wagner
- Laboratory of Functional Chemo-Systems UMR 7199 CNRS-UdS; 67401 Illkirch France
| | - Sergii Kolodych
- Syndivia SAS, 650 Boulevard Gonthier d'Andernach; 67400 Illkirch France
| | - Frédéric Taran
- Service de Chimie Bio-organique et Marquage, DRF-JOLIOT-SCBM, CEA; Université Paris-Saclay; 91191 Gif-sur-Yvette France
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50
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Narayanam MK, Ma G, Champagne PA, Houk KN, Murphy JM. Synthesis of [ 18 F]Fluoroarenes by Nucleophilic Radiofluorination of N-Arylsydnones. Angew Chem Int Ed Engl 2017; 56:13006-13010. [PMID: 28834065 PMCID: PMC5674999 DOI: 10.1002/anie.201707274] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Revised: 08/17/2017] [Indexed: 11/08/2022]
Abstract
A practical method for radiofluorination of anilines with [18 F]fluoride via N-arylsydnone intermediates is described. These precursors are stable, easy to handle and facilitate direct and regioselective 18 F-labeling to prepare [18 F]fluoroarenes. The value of this methodology is further highlighted by successful application to prepare an 18 F-labeled neuropeptide.
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Affiliation(s)
- Maruthi Kumar Narayanam
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Gaoyuan Ma
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Pier Alexandre Champagne
- Department of Chemistry and Biochemistry, and Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Kendall N Houk
- Department of Chemistry and Biochemistry, and Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Jennifer M Murphy
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
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