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Gandra UR, Axthelm J, Bellstedt P, Singh A, Schiller A, Mohideen MIH, Mandal AK. 19F NMR Probes: Molecular Logic Material Implications for the Anion Discrimination and Chemodosimetric Approach for Selective Detection of H 2O 2. Anal Chem 2024; 96:11232-11238. [PMID: 38961620 DOI: 10.1021/acs.analchem.4c00735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
Abstract
Detection and discrimination of similar solvation energies of bioanalytes are vital in medical and practical applications. Currently, various advanced techniques are equipped to recognize these crucial bioanalytes. Each strategy has its own benefits and limitations. One-dimensional response, lack of discrimination power for anions, and reactive oxygen species (ROS) generally limit the utilized fluorescent probe. Therefore, a cutting-edge, refined method is expected to conquer these limitations. The use of 19F NMR spectroscopy for detecting and discriminating essential analytes in practical applications is an emerging technique. As an alternative strategy, we report two fluorinated boronic acid-appended pyridinium salts 5-F-o-BBBpy (1) and 5-CF3-o-BBBpy (2). Probe (1) acts as a chemosensor for identifying and discriminating inorganic anions with similar solvation energies with strong bidirectional 19F shifts in the lower ppm range. Probe (2) turns as a chemo dosimeter for the selective detection and precise quantification of hydrogen peroxide (H2O2) among other competing ROS. To demonstrate real-life applicability, we successfully quantified H2O2 via probe (2) in different pharmaceutical, dental, and cosmetic samples. We found that tuning the -F/-CF3 moiety to the arene boronic acid enables the π-conjugation, a crucial prerequisite for the discrimination of anions and H2O2. Characteristic 19F NMR fingerprints in the presence of anions revealed a complementary implication (IMP)/not implication (NIMP) logic function. Finally, the 16 distinct binary Boolean operations on two logic values are defined for "functional completeness" using the special property of the IMP gate. Boolean logic's ability to handle information by utilizing characteristic 19F NMR fingerprints has not been seen previously in a single chemical platform for detecting and differentiating such anions.
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Affiliation(s)
- Upendar Reddy Gandra
- Institute for Inorganic and Analytical Chemistry (IAAC), Friedrich Schiller University Jena, Humboldtstr. 8, D-07743 Jena, Germany
- Department of Chemistry, Khalifa University of Science and Technology, Main Campus, P.O. Box 127788, Abu Dhabi, United Arab Emirates
| | - Jörg Axthelm
- Institute for Inorganic and Analytical Chemistry (IAAC), Friedrich Schiller University Jena, Humboldtstr. 8, D-07743 Jena, Germany
| | - Peter Bellstedt
- Institute for Inorganic and Analytical Chemistry (IAAC), Friedrich Schiller University Jena, Humboldtstr. 8, D-07743 Jena, Germany
| | - Akanksha Singh
- Analytical and Environmental Science Division and Centralized Instrument Facility, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Bhavnagar 364002, Gujarat, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Alexander Schiller
- Institute for Inorganic and Analytical Chemistry (IAAC), Friedrich Schiller University Jena, Humboldtstr. 8, D-07743 Jena, Germany
| | - M Infas H Mohideen
- Department of Chemistry, Khalifa University of Science and Technology, Main Campus, P.O. Box 127788, Abu Dhabi, United Arab Emirates
- Center for Catalysis and Separations, Khalifa University of Science and Technology, P.O. Box 127788, Abu Dhabi, United Arab Emirates
| | - Amal Kumar Mandal
- Analytical and Environmental Science Division and Centralized Instrument Facility, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Bhavnagar 364002, Gujarat, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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2
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Rather IA, Ali R. Indicator displacement assays: from concept to recent developments. Org Biomol Chem 2021; 19:5926-5981. [PMID: 34143168 DOI: 10.1039/d1ob00518a] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Overcoming the synthetic burden related to covalently connected receptors with appropriate indicators for sensing various analytes via an indicator spacer receptor (ISR) approach, the indicator displacement assay (IDA) seems to be a very sophisticated and versatile supramolecular sensing paradigm, and it has taken the phenomenon of molecular recognition to the next level in the realm of host-guest chemistry. Due to the unavailability of a comprehensive report on what has been done in the last decade in relation to IDAs, we decided to set down this account illustrating diverse indicator displacement assays (IDAs) in detail from the concept stage to recent developments relating to the detection of cationic, anionic, and neutral analytes. The authors conclude this account with future perspectives and highlight the limitations and challenges relating to IDAs which need to be overcome in order to realize the full potential of this popular sensing phenomenon. While we were finalizing our account for publication, a tutorial review by the research groups of Anslyn, Sessler, and Sun was published, which focuses mainly on diverse aspects of the chemistry related to IDAs. As can be seen, our review, besides discussing various basic IDA concepts, has a vast collection of information published in the past decade and hence, hopefully, will be very informative for the supramolecular community. We believe that this work will offer new insights for the construction of novel sensors operating through the IDA approach.
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Affiliation(s)
- Ishfaq Ahmad Rather
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Jamia Nagar, Okhla, New Delhi 110025, India.
| | - Rashid Ali
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Jamia Nagar, Okhla, New Delhi 110025, India.
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Sedgwick AC, Brewster JT, Wu T, Feng X, Bull SD, Qian X, Sessler JL, James TD, Anslyn EV, Sun X. Indicator displacement assays (IDAs): the past, present and future. Chem Soc Rev 2021; 50:9-38. [DOI: 10.1039/c9cs00538b] [Citation(s) in RCA: 69] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Indicator displacement assays (IDAs) offer a unique and innovative approach to molecular sensing. This Tutorial review discusses the basic concepts of each IDA strategy and illustrates their use in sensing applications.
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Affiliation(s)
- Adam C. Sedgwick
- Department of Chemistry
- The University of Texas at Austin
- Austin
- USA
| | | | - Tianhong Wu
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education
- School of Life Science and Technology
- Xi’an Jiaotong University
- Xi’an
- P. R. China
| | - Xing Feng
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education
- School of Life Science and Technology
- Xi’an Jiaotong University
- Xi’an
- P. R. China
| | | | - Xuhong Qian
- State Key Laboratory of Bioreactor Engineering
- Shanghai Key Laboratory of Chemical Biology
- School of Pharmacy
- East China University of Science and Technology
- Shanghai 200237
| | | | | | - Eric V. Anslyn
- Department of Chemistry
- The University of Texas at Austin
- Austin
- USA
| | - Xiaolong Sun
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education
- School of Life Science and Technology
- Xi’an Jiaotong University
- Xi’an
- P. R. China
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4
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Affiliation(s)
- Zhenchuang Xu
- Key Laboratory of Organofluorine Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, China
| | - Chao Liu
- Key Laboratory of Organofluorine Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, China
| | - Shujuan Zhao
- Key Laboratory of Organofluorine Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, China
| | - Si Chen
- Key Laboratory of Organofluorine Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, China
| | - Yanchuan Zhao
- Key Laboratory of Organofluorine Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, China
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5
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Gabrielli L, Carril M, Padro D, Mancin F. Multimodal 19
F NMR Dopamine Detection and Imaging with a Nanoparticle-Based Displacement Assay. Chemistry 2018; 24:13036-13042. [DOI: 10.1002/chem.201802482] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 06/07/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Luca Gabrielli
- Dipartimento di Scienze Chimiche; Università di Padova; via Marzolo 1 35131 Padova Italy
| | - Monica Carril
- CIC biomaGUNE; Paseo Miramón 182 20014 San Sebastián Spain
- Ikerbasque, Basque Foundation for Science; 48011 Bilbao Spain
| | - Daniel Padro
- CIC biomaGUNE; Paseo Miramón 182 20014 San Sebastián Spain
| | - Fabrizio Mancin
- Dipartimento di Scienze Chimiche; Università di Padova; via Marzolo 1 35131 Padova Italy
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Dempsey ME, Marble HD, Shen TL, Fawzi NL, Darling EM. Synthesis and Characterization of a Magnetically Active 19F Molecular Beacon. Bioconjug Chem 2018; 29:335-342. [PMID: 29272914 DOI: 10.1021/acs.bioconjchem.7b00671] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Gene expression is used extensively to describe cellular characteristics and behaviors; however, most methods of assessing gene expression are unsuitable for living samples, requiring destructive processes such as fixation or lysis. Recently, molecular beacons have become a viable tool for live-cell imaging of mRNA molecules in situ. Historically, beacon-mediated imaging has been limited to fluorescence-based approaches. We propose the design and synthesis of a novel molecular beacon for magnetic resonance detection of any desired target nucleotide sequence. The biologically compatible synthesis incorporates commonly used bioconjugation reactions in aqueous conditions and is accessible for laboratories without extensive synthesis capabilities. The resulting beacon uses fluorine (19F) as a reporter, which is broadened, or turned "off", via paramagnetic relaxation enhancement from a stabilized nitroxide radical spin label when the beacon is not bound to its nucleic acid target. Therefore, the 19F NMR signal of the beacon is quenched in its hairpin conformation when the spin label and the 19F substituent are held in proximity, but the signal is recovered upon beacon hybridization to its specific complementary nucleotide sequence by physical separation of the radical from the 19F reporter. This study establishes a path for magnetic resonance-based assessment of specific mRNA expression, providing new possibilities for applying molecular beacon technology in living systems.
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Affiliation(s)
- Megan E Dempsey
- Center for Biomedical Engineering, ‡Department of Molecular Pharmacology, Physiology, and Biotechnology, §Department of Chemistry, ∥School of Engineering, and ⊥Department of Orthopaedics, Brown University , Providence, Rhode Island 02912, United States
| | - Hetal D Marble
- Center for Biomedical Engineering, ‡Department of Molecular Pharmacology, Physiology, and Biotechnology, §Department of Chemistry, ∥School of Engineering, and ⊥Department of Orthopaedics, Brown University , Providence, Rhode Island 02912, United States
| | - Tun-Li Shen
- Center for Biomedical Engineering, ‡Department of Molecular Pharmacology, Physiology, and Biotechnology, §Department of Chemistry, ∥School of Engineering, and ⊥Department of Orthopaedics, Brown University , Providence, Rhode Island 02912, United States
| | - Nicolas L Fawzi
- Center for Biomedical Engineering, ‡Department of Molecular Pharmacology, Physiology, and Biotechnology, §Department of Chemistry, ∥School of Engineering, and ⊥Department of Orthopaedics, Brown University , Providence, Rhode Island 02912, United States
| | - Eric M Darling
- Center for Biomedical Engineering, ‡Department of Molecular Pharmacology, Physiology, and Biotechnology, §Department of Chemistry, ∥School of Engineering, and ⊥Department of Orthopaedics, Brown University , Providence, Rhode Island 02912, United States
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7
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Sarkar A, Biton IE, Neeman M, Datta A. A macrocyclic 19 F-MR based probe for Mn 2+ sensing. INORG CHEM COMMUN 2017. [DOI: 10.1016/j.inoche.2017.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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8
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Development of highly-sensitive detection system in 19 F NMR for bioactive compounds based on the assembly of paramagnetic complexes with fluorinated cubic silsesquioxanes. Bioorg Med Chem 2017; 25:1389-1393. [DOI: 10.1016/j.bmc.2016.12.044] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2016] [Revised: 12/27/2016] [Accepted: 12/27/2016] [Indexed: 01/06/2023]
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9
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Hermkens NKJ, Eshuis N, van Weerdenburg BJA, Feiters MC, Rutjes FPJT, Wijmenga SS, Tessari M. NMR-Based Chemosensing via p-H2 Hyperpolarization: Application to Natural Extracts. Anal Chem 2016; 88:3406-12. [PMID: 26901632 DOI: 10.1021/acs.analchem.6b00184] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
When dealing with trace analysis of complex mixtures, NMR suffers from both low sensitivity and signal overlap. NMR chemosensing, in which the association between an analyte and a receptor is "signaled" by an NMR response, has been proposed as a valuable analytical tool for biofluids and natural extracts. Such chemosensors offer the possibility to simultaneously detect and distinguish different analytes in solution, which makes them particularly suitable for analytical applications on complex mixtures. In this study, we have combined NMR chemosensing with nuclear spin hyperpolarization. This was realized using an iridium complex as a receptor in the presence of parahydrogen: association of the target analytes to the metal center results in approximately 1000-fold enhancement of the NMR response. This amplification allows the detection, identification, and quantification of analytes at low-micromolar concentrations, provided they can weakly associate to the iridium chemosensor. Here, our NMR chemosensing approach was applied to the quantitative determination of several flavor components in methanol extracts of ground coffee.
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Affiliation(s)
- Niels K J Hermkens
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Nan Eshuis
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Bram J A van Weerdenburg
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Martin C Feiters
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Floris P J T Rutjes
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Sybren S Wijmenga
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Marco Tessari
- Institute for Molecules and Materials, Radboud University , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
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10
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Salvia MV, Salassa G, Rastrelli F, Mancin F. Turning Supramolecular Receptors into Chemosensors by Nanoparticle-Assisted “NMR Chemosensing”. J Am Chem Soc 2015; 137:11399-406. [DOI: 10.1021/jacs.5b06300] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Marie-Virgine Salvia
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, Padova, Italy
| | - Giovanni Salassa
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, Padova, Italy
| | - Federico Rastrelli
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, Padova, Italy
| | - Fabrizio Mancin
- Dipartimento di Scienze Chimiche, Università di Padova, via Marzolo 1, Padova, Italy
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11
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Salvia MV, Ramadori F, Springhetti S, Diez-Castellnou M, Perrone B, Rastrelli F, Mancin F. Nanoparticle-Assisted NMR Detection of Organic Anions: From Chemosensing to Chromatography. J Am Chem Soc 2015; 137:886-92. [DOI: 10.1021/ja511205e] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marie-Virginie Salvia
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
| | - Federico Ramadori
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
| | - Sara Springhetti
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
| | - Marta Diez-Castellnou
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
| | - Barbara Perrone
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
| | - Federico Rastrelli
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
| | - Fabrizio Mancin
- Università di Padova, Dipartimento di Scienze Chimiche, via Marzolo 1, Padova, Italy
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