Unveiling the role of inorganic nanoparticles in Earth's biochemical evolution through electron transfer dynamics

This article explores the intricate interplay between inorganic nanoparticles and Earth's biochemical history, with a focus on their electron transfer properties. It reveals how iron oxide and sulfide nanoparticles, as examples of inorganic nanoparticles, exhibit oxidoreductase activity similar to proteins. Termed "life fossil oxidoreductases," these inorganic enzymes influence redox reactions, detoxification processes, and nutrient cycling in early Earth environments. By emphasizing the structural configuration of nanoparticles and their electron conformation, including oxygen defects and metal vacancies, especially electron hopping, the article provides a foundation for understanding inorganic enzyme mechanisms. This approach, rooted in physics, underscores that life's origin and evolution are governed by electron transfer principles within the framework of chemical equilibrium. Today, these nanoparticles serve as vital biocatalysts in natural ecosystems, participating in critical reactions for ecosystem health. The research highlights their enduring impact on Earth's history, shaping ecosystems and interacting with protein metal centers through shared electron transfer dynamics, offering insights into early life processes and adaptations.

Reaction Mechanisms and Kinetics of Nanozymes: Insights from Theory and Computation

"Nanozymes" usually refers to inorganic nanomaterials with enzyme-like catalytic activities. The research into nanozymes is one of the hot topics on the horizon of interdisciplinary science involving materials, chemistry, and biology. Although great progress has been made in the design, synthesis, characterization, and application of nanozymes, the study of the underlying microscopic mechanisms and kinetics is still not straightforward. Density functional theory (DFT) calculations compute the potential energy surfaces along the reaction coordinates for chemical reactions, which can give atomistic-level insights into the micro-mechanisms and kinetics for nanozymes. Therefore, DFT calculations have been playing an increasingly important role in exploring the mechanisms and kinetics for nanozymes in the past years. The calculations either predict the microscopic details for the catalytic processes to complement the experiments or further develop theoretical models to depict the physicochemical rules. In this review, the corresponding research progress is summarized. Particularly, the review focuses on the computational studies that closely interplay with the experiments. The relevant experimental results without DFT calculations will be also briefly discussed to offer a historic overview of how the computations promote the understanding of the microscopic mechanisms and kinetics of nanozymes.

Inorganic Fe-O and Fe-S oxidoreductases: paradigms for prebiotic chemistry and the evolution of enzymatic activity in biology

Oxidoreductases play crucial roles in electron transfer during biological redox reactions. These reactions are not exclusive to protein-based biocatalysts; nano-size (<100 nm), fine-grained inorganic colloids, such as iron oxides and sulfides, also participate. These nanocolloids exhibit intrinsic redox activity and possess direct electron transfer capacities comparable to their biological counterparts. The unique metal ion architecture of these nanocolloids, including electron configurations, coordination environment, electron conductivity, and the ability to promote spontaneous electron hopping, contributes to their transfer capabilities. Nano-size inorganic colloids are believed to be among the earliest 'oxidoreductases' to have 'evolved' on early Earth, playing critical roles in biological systems. Representing a distinct type of biocatalysts alongside metalloproteins, these nanoparticles offer an early alternative to protein-based oxidoreductase activity. While the roles of inorganic nano-sized catalysts in current Earth ecosystems are intuitively significant, they remain poorly understood and underestimated. Their contribution to chemical reactions and biogeochemical cycles likely helped shape and maintain the balance of our planet's ecosystems. However, their potential applications in biomedical, agricultural, and environmental protection sectors have not been fully explored or exploited. This review examines the structure, properties, and mechanisms of such catalysts from a material's evolutionary standpoint, aiming to raise awareness of their potential to provide innovative solutions to some of Earth's sustainability challenges.

Cobalt nanoparticle-catalysed N-alkylation of amides with alcohols

A protocol for efficient N-alkylation of benzamides with alcohols in the presence of cobalt-nanocatalysts is described. Key to the success of this general methodology is the use of highly dispersed cobalt nanoparticles supported on carbon, which are obtained from the pyrolysis of cobalt(ii) acetate and o-phenylenediamine as a ligand at suitable temperatures. The catalytic material shows a broad substrate scope and good tolerance to functional groups. Apart from the synthesis of a variety of secondary amides (>45 products), the catalyst allows for the conversion of more challenging aliphatic alcohols and amides, including biobased and macromolecular amides. The practical applicability of the catalyst is underlined by the successful recycling and reusability.

Probing spin waves in Co3O4 nanoparticles for magnonics applications

The magnetic properties of spinel nanoparticles can be controlled by synthesizing particles of a specific shape and size. The synthesized nanorods, nanodots and cubic nanoparticles have different crystal planes selectively exposed on the surface. The surface effects on the static magnetic properties are well documented, while their influence on spin waves dispersion is still being debated. Our ability to manipulate spin waves using surface and defect engineering in magnetic nanoparticles is the key to designing magnonic devices. We synthesized cubic and spherical nanoparticles of a classical antiferromagnetic material Co3O4 to study the shape and size effects on their static and dynamic magnetic proprieties. Using a combination of experimental methods, we probed the magnetic and crystal structures of our samples and directly measured spin wave dispersions using inelastic neutron scattering. We found a weak, but unquestionable, increase in exchange interactions for the cubic nanoparticles as compared to spherical nanoparticle and bulk powder reference samples. Interestingly, the exchange interactions in spherical nanoparticles have bulk-like properties, despite a ferromagnetic contribution from canted surface spins.

Nanozyme-assisted amplification-free CRISPR/Cas system realizes visual detection

The CRISPR (clustered regularly interspaced short palindromic repeats)/Cas (CRISPR associated) system has proven to be a powerful tool for nucleic acid detection due to its inherent advantages of effective nucleic acid identification and editing capabilities, and is therefore known as the next-generation of molecular diagnostic technology. However, the detection technologies based on CRISPR/Cas systems require preamplification of target analytes; that is, target gene amplification steps through isothermal amplification or PCR before detection to increase target analyte concentrations. This creates a number of testing limitations, such as extended testing time and the need for more sophisticated testing instruments. To overcome the above limitations, various amplification-free assay strategies based on CRISPR/Cas systems have been explored as alternatives, which omit the preamplification step to increase the concentrations of the target analytes. Nanozymes play a pivotal role in enhancing the sensitivity of CRISPR-based detection, enabling visual and rapid CRISPR assays. The utilization of nanozyme exceptional enzyme-like catalytic activity holds great promise for signal amplification in both electrochemical and optical domains, encompassing strategies for electrochemical signal sensors and colorimetric signal sensors. Rather than relying on converting a single detection target analyte into multiple analytes, these methods focus on signal amplification, the main mechanism of which involves the ability to form a large number of reporter molecules or to improve the performance of the sensor. This exploitation of nanozymes for signal amplification results in the heightened sensitivity and accuracy of detection outcomes. In addition to the strategies that improve sensor performance through the application of nanozymes, additional methods are needed to achieve visual signal amplification strategies without preamplification processes. Herein, we review the strategies for improving CRISPR/Cas systems that do not require preamplification, providing a simple, intuitive and preamplification-free CRISPR/Cas system detection platform by improving in-system one-step amplification programs, or enhancing nanozyme-mediated signal amplification strategies.

Oxidation States Regulation of Cobalt Active Sites through Crystal Surface Engineering for Enhanced Polysulfide Conversion in Lithium-Sulfur Batteries

In this work, unique Co₃ O₄ /N-doped reduced graphene oxide (Co₃ O₄ /N-rGO) composites as favorable sulfur immobilizers and promoters for lithium-sulfur (Li-S) batteries are developed. The prepared Co₃ O₄  nanopolyhedrons (Co₃ O₄ -NP) and Co₃ O₄  nanocubes mainly expose (112) and (001) surfaces, respectively, with different atomic configurations of Co²⁺ /Co³⁺ sites. Experiments and theoretical calculations confirm that the octahedral coordination Co³⁺ (Co³⁺ _Oh ) sites with different oxidation states from tetrahedral coordination Co²⁺ sites optimize the adsorption and catalytic conversion of lithium polysulfides. Specially, the Co₃ O₄ -NP crystals loaded on N-rGO expose (112) planes with ample Co³⁺ _Oh active sites, exhibiting stronger adsorbability and superior catalytic activity for polysulfides, thus inhibiting the shuttle effect. Therefore, the S@Co₃ O₄ -NP/N-rGO cathodes deliver excellent electrochemical properties, for example, stable cyclability at 1 C with a low capacity decay rate of 0.058% over 500 cycles, superb rate capability up to 3 C, and high areal capacity of 4.1 mAh cm^-2 . This catalyst's design incorporating crystal surface engineering and oxidation state regulation strategies also provides new approaches for addressing the complicated issues of Li-S batteries.

Catalase-Like Nanozymes: Classification, Catalytic Mechanisms, and Their Applications

The field of nanozymes has developed rapidly over the past decade. Among various oxidoreductases mimics, catalase (CAT)-like nanozyme, acting as an essential part of the regulation of reactive oxygen species (ROS), has attracted extensive research interest in recent years. However, CAT-like nanozymes are not as well discussed as other nanozymes such as peroxidase (POD)-like nanozymes, etc. Compared with natural catalase or artificial CAT enzymes, CAT-like nanozymes have unique properties of low cost, size-dependent properties, high catalytic activity and stability, and easy surface modification, etc., which make them widely used in various fields, especially in tumor therapy and disease treatment. Consequently, there is a great requirement to make a systematic discussion on CAT-like nanozymes. In this review, some key aspects of CAT-like nanozymes are deeply summarized as: 1) Typical CAT-like nanozymes classified by different nanomaterials; 2) The catalytic mechanisms proposed by experimental and theoretical studies; 3) Extensive applications in regard to tumor therapy, cytoprotection and sensing. Therefore, it is prospected that this review will contribute to the further design of CAT-like nanozymes and optimize their applications with much higher efficiency than before.

Chemical conversion based on the crystal facet effect of transition metal oxides and construction methods for sharp-faced nanocrystals

In-depth research has found that the nanocrystal facet of transition metal oxides (TMOs) greatly affects their heterogeneous catalytic performance, as well as the property of photocatalysis, gas sensing, electrochemical reaction, etc. that are all involved in chemical conversion processes. Therefore, the facet-dependent properties of TMO nanocrystals have been fully and carefully studied by combining systematic experiments and theoretical calculations, and mechanisms of chemical reactions are accurately explained at the molecular level, which will be closer to the essence of reactions. Evidently, as an accurate investigation on crystal facets, well-defined TMO nanocrystals are the basis and premise for obtaining relevant credible results, and shape-controlled synthesis of TMO nanocrystals thereby has received great attention and development. The success in understanding of facet-dependent properties and shape-controlled synthesis of TMO nanocrystals is highly valuable for the control of reaction and the design of high-efficiency TMO nanocrystal catalysts as well as other functional materials in practical applications.

Design of hybrid biocatalysts by controlled heteroaggregation of manganese oxide and sulfate latex particles to combat reactive oxygen species

The preparation of an antioxidant hybrid material by controlled heteroaggregation of manganese oxide nanoparticles (MnO2 NPs) and sulfate-functionalized polystyrene latex (SL) beads was accomplished. Negatively charged MnO2 NPs were prepared by precipitation and initially functionalized with poly(diallyldimethylammonium chloride) (PDADMAC) polyelectrolyte to induce charge reversal allowing decoration of oppositely charged SL surfaces via simple mixing. The PDADMAC-functionalized MnO2 NPs (PMn) aggregated with the SL particles leading to the formation of negatively charged, neutral and positively charged (SPMn) composites. The charge neutralization resulted in rapidly aggregating dispersions, while stable samples were observed once the composites possessed sufficiently high negative and positive charge, below and above the charge neutralization point, respectively. The antioxidant assays revealed that SL served as a suitable substrate and that the PDADMAC functionalization and immobilization of MnO2 NPs did not compromise their catalase (CAT) and superoxide dismutase (SOD)-like activities, which were also maintained within a wide temperature range. The obtained SPMn composite is expected to be an excellent candidate as an antioxidant material for the efficient scavenging of reactive oxygen species at both laboratory and larger scales, even under harsh conditions, where natural antioxidants do not function.

Designing biopolymer-based artificial peroxidase for oxidative removal of dibenzothiophene from a model diesel fuel

Naturally occurring peroxidases are important for living organisms and have manifold utility in industries. However, lack of stability in harsh reaction conditions hinders wide applicability of such enzymes. Thus, suitable alternative is vital which can endure severe reaction conditions. As a substitute of natural peroxidase, herein, biopolymer-based polyelectrolyte complexes (PECs) coordinated with Feⁿ⁺ is proposed as macromolecular peroxidase mimicking systems. Three PECs were engineered via complexation of protonated chitosan and alginate with Fe²⁺ (Fe²⁺-PEC), Fe³⁺ (Fe³⁺-PEC), and Fe₃O₄ (Fe₃O₄-PEC), respectively. Computational study showed the Fe³⁺-PEC was highly stable with abundant electrostatic and intramolecular hydrogen bonding interactions. The versatility of the Fe-PECs as artificial peroxidase biocatalysts was probed by two types of peroxidase assays - ABTS oxidation in buffer systems (pH 4.0 and 7.0) and pyrogallol oxidation in organic solvents (acetonitrile, ethyl acetate and toluene). Overall, Fe³⁺-PEC showed remarkably high peroxidase activity both in aqueous buffers and in organic solvents, whereas, Fe₃O₄-PEC showed least catalytic activity. Finally, as a proof of concept, the ability of the biocatalyst to carry out deep oxidative desulphurization was demonstrated envisaging removal of dibenzothiophene from model fossil fuel in a sustainable way.

Nanostructured manganese oxides as highly active catalysts for enhanced hydrolysis of bis(4-nitrophenyl)phosphate and catalytic decomposition of methanol

The nanostructured manganese oxides (MnOx) exhibited high catalytic activities for hydrolysis of phosphate diester-based substrate bis(4-nitrophenyl)phosphate and decomposition of methanol to carbon monoxide and hydrogen as a potential alternative fuel.

Perspectives for Single-Atom Nanozymes: Advanced Synthesis, Functional Mechanisms, and Biomedical Applications

Single-atom nanozymes (SANs) are one of the newest generations of nanozymes, which have been greatly developed in the past few years and exploited widely for many applications, such as biosensing, disease diagnosis and therapy, bioimaging, and so on. SANs, possessing dispersed single-atom structures and a well-defined coordination environment, exhibit remarkable catalytic performance with both high activity and stability. In this paper, the most recent progress in SANs is reviewed in terms of their advanced synthesis, characterization, functional mechanisms, performance validation/optimization, and biomedical applications. Several technical challenges hindering practical applications of SANs are analyzed, and possible research directions are also proposed for overcoming the challenges.

Toward Informed Design of Nanomaterials: A Mechanistic Analysis of Structure-Property-Function Relationships for Faceted Nanoscale Metal Oxides

Nanoscale metal oxides (NMOs) have found wide-scale applicability in a variety of environmental fields, particularly catalysis, gas sensing, and sorption. Facet engineering, or controlled exposure of a particular crystal plane, has been established as an advantageous approach to enabling enhanced functionality of NMOs. However, the underlying mechanisms that give rise to this improved performance are often not systematically examined, leading to an insufficient understanding of NMO facet reactivity. This critical review details the unique electronic and structural characteristics of commonly studied NMO facets and further correlates these characteristics to the principal mechanisms that govern performance in various catalytic, gas sensing, and contaminant removal applications. General trends of facet-dependent behavior are established for each of the NMO compositions, and selected case studies for extensions of facet-dependent behavior, such as mixed metals, mixed-metal oxides, and mixed facets, are discussed. Key conclusions about facet reactivity, confounding variables that tend to obfuscate them, and opportunities to deepen structure-property-function understanding are detailed to encourage rational, informed design of NMOs for the intended application.

Development of 3-dimensional Co3O4 catalysts with various morphologies for activation of Oxone to degrade 5-sulfosalicylic acid in water

Since 5-sulfosalicylic acid (SFA) has been increasingly released to the environment, SO₄^--based oxidation processes using Oxone have been considered as useful methods to eliminate SFA. As Co₃O₄ has been a promising material for OX activation, the four 3D Co₃O₄ catalysts with distinct morphologies, including Co₃O₄-C (with cubes), Co₃O₄-P (with plates), Co₃O₄-N (with needles) and Co₃O₄-F (with floral structures), are fabricated for activating OX to degrade SFA. In particular, Co₃O₄-F not only exhibits the highest surface area but also possesses the abundant Co²⁺ and more reactive surface, making Co₃O₄-F the most advantageous 3D Co₃O₄ catalyst for OX activation to degrade SFA. The mechanism of SFA by this 3D Co₃O₄/OX is also investigated and the corresponding SFA degradation pathway has been elucidated. The catalytic activities of Co₃O₄ catalysts can be correlated to physical and chemical properties which were associated with particular morphologies to provide insights into design of 3D Co₃O₄-based catalysts for OX-based technology to degrade emerging contaminants, such as SFA.

Antioxidant Materials Based on 2D Nanostructures: A Review on Recent Progresses

Counteracting reactive oxygen species (ROS, e.g., superoxide radical ion, H2O2 and hydroxyl radical) is an important task in fighting against oxidative stress-related illnesses and in improving product quality in industrial manufacturing processes. This review focuses on the recent advances on two-dimensional (2D) nanomaterials of antioxidant activity, which are designed for effective decomposition of ROS and thus, for reduction of oxidative stress. Some materials featured in this paper are of uni- or multi-lamellar structures modified with small molecular or enzymatic antioxidants. Others are enzyme-mimicking synthetic compounds (the so-called nanozymes) prepared without antioxidant additives. However, carbon-based materials will not be included, as they were extensively reviewed in the recent past from similar aspects. Given the landmark development around the 2D materials used in various bio-applications, sheet-like antioxidant compounds are of great interest in the scientific and technological communities. Therefore, the authors hope that this review on the recent progresses will be helpful especially for researchers working on novel developments to substantially reduce oxidative stress either in biological systems or industrial liquors.

Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes (II)

An updated comprehensive review to help researchers understand nanozymes better and in turn to advance the field.

Hydrolysis of Phosphate Esters Catalyzed by Inorganic Iron Oxide Nanoparticles Acting as Biocatalysts

Phosphorus ester hydrolysis is one of the key chemical processes in biological systems, including signaling, free-energy transaction, protein synthesis, and maintaining the integrity of genetic material. Hydrolysis of this otherwise kinetically stable phosphoester and/or phosphoanhydride bond is induced by enzymes such as purple acid phosphatase. Here, I report that, as in previously reported aged inorganic iron ion solutions, the iron oxide nanoparticles in the solution, which are trapped in a dialysis membrane tube filled with the various iron oxides, significantly promote the hydrolysis of the various phosphate esters, including the inorganic polyphosphates, with enzyme-like kinetics. This observation, along with those of recent studies of iron oxide, vanadium pentoxide, and molybdenum trioxide nanoparticles that behave as mimics of peroxidase, bromoperoxidase, and sulfite oxidase, respectively, indicates that the oxo-metal bond in the oxide nanoparticles is critical for the function of these corresponding natural metalloproteins. These inorganic biocatalysts challenge the traditional concept of replicator-first scenarios and support the metabolism-first hypothesis. As biocatalysts, these inorganic nanoparticles with enzyme-like activity may work in natural terrestrial environments and likely were at work in early Earth environments as well. They may have played an important role in the C, H, O, S, and P metabolic pathway with regard to the emergence and early evolution of life. Key Words: Enzyme-Hydrolysis-Iron oxide-Nanoparticles-Origin of life-Phosphate ester. Astrobiology 18, 294-310.

Nanoisozymes: Crystal-Facet-Dependent Enzyme-Mimetic Activity of V2 O5 Nanomaterials

Nanomaterials with enzyme-like activity (nanozymes) attract significant interest owing to their applications in biomedical research. Particularly, redox nanozymes that exhibit glutathione peroxidase (GPx)-like activity play important roles in cellular signaling by controlling the hydrogen peroxide (H₂ O₂ ) level. Herein we report, for the first time, that the redox properties and GPx-like activity of V₂ O₅ nanozyme depends not only on the size and morphology, but also on the crystal facets exposed on the surface within the same crystal system of the nanomaterials. These results suggest that the surface of the nanomaterials can be engineered to fine-tune their redox properties to act as "nanoisozymes" for specific biological applications.

Redox enzyme-mimicking activities of CeO2 nanostructures: Intrinsic influence of exposed facets

CeO₂ nanoparticles (NPs) have been well demonstrated as an antioxidant in protecting against oxidative stress-induced cellular damages and a potential therapeutic agent for various diseases thanks to their redox enzyme-mimicking activities. The Ce³⁺/Ce⁴⁺ ratio and oxygen vacancies on the surface have been considered as the major originations responsible for the redox enzyme-mimicking activities of CeO₂ NPs. Herein, CeO₂ nanostructures (nanocubes and nanorods) exposed different facets were synthesized via a facile hydrothermal method. The characterizations by X-ray photoelectron spectroscopy, Raman spectroscopy, and UV-Vis spectroscopy show that the Ce³⁺/Ce⁴⁺ ratio and oxygen vacancy content on the surfaces of as-synthesized CeO₂ nanostructures are nearly at the same levels. Meanwhile, the enzymatic activity measurements indicate that the redox enzyme-mimicking activities of as-synthesized CeO₂ nanostructures are greatly dependent on their exposed facets. CeO₂ nanocubes with exposed {100} facets exhibit a higher peroxidase but lower superoxide dismutase activity than those of the CeO₂ nanorods with exposed {110} facets. Our results provide new insights into the redox enzyme-mimicking activities of CeO₂ nanostructures, as well as the design and synthesis of inorganic nanomaterials-based artificial enzymes.

Triple-enzyme mimetic activity of Co3O4 nanotubes and their applications in colorimetric sensing of glutathione

Based on the oxidase-like activity of Co₃O₄ nanotubes, a simple and sensitive colorimetric sensor for GSH detection was investigated.

Synthesis of a mixed valence state Ce-MOF as an oxidase mimetic for the colorimetric detection of biothiols

We demonstrate a facile and rapid in situ partial oxidation synthetic strategy for the fabrication of a mixed valence state Ce-MOF (MVCM) which exhibits intrinsic oxidase-like activity. Furthermore, on the basis of the excellent catalytic activity of the MCVM, a colorimetric approach for the high-throughput detection of biothiols in serum samples was established.

A facile synthetic approach for SiO2@Co3O4 core–shell nanorattles with enhanced peroxidase-like activity

SiO₂@Co₃O₄ core–shell nanorattles have been successfully synthesized through a novel self-template route by the calcination of SiO₂@α-Co(OH)₂ at 500 °C and the nanorattles exhibit enhanced peroxidase-like activity.