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Chen J, Pelc A, Ameixa J, Kossoski F, Denifl S. Low-Energy Electron Interactions with Methyl-p-benzoquinone: A Study of Negative Ion Formation. ACS OMEGA 2024; 9:38032-38043. [PMID: 39281892 PMCID: PMC11391464 DOI: 10.1021/acsomega.4c04899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 08/09/2024] [Accepted: 08/13/2024] [Indexed: 09/18/2024]
Abstract
Methyl-p-benzoquinone (MpBQ, CH3C6H3(=O)2) is a prototypical molecule in the study of quinones, which are compounds of relevance in biology and several redox reactions. Understanding the electron attachment properties of MpBQ and its ability to form anions is crucial in elucidating its role in these reactions. In this study, we investigate electron attachment to MpBQ employing a crossed electron-molecular beam experiment in the electron energy range of approximately 0 to 12 eV, as well as theoretical approaches using quantum chemical and electron scattering calculations. Six anionic species were identified: C7H6O2 -, C7H5O2 -, C6H5O-, C4HO-, C2H2 -, and O-. The parent anion is formed most efficiently, with large cross sections, through two resonances at electron energies between 1 and 2 eV. Potential reaction pathways for all negative ions observed are explored, and the experimental appearance energies are compared with calculated thermochemical thresholds. Although exhibiting similar electron attachment properties to pBQ, MpBQ's additional methyl group introduces entirely new dissociative reactions, while quenching others, underscoring its distinctive chemical behavior.
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Affiliation(s)
- Jiakuan Chen
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, A-6020 Innsbruck, Austria
| | - Andrzej Pelc
- Department of Biophysics, Mass Spectrometry Laboratory, Maria Curie-Skłodowska University, Pl. M. C.-Skłodowskiej 1, 20-031 Lublin, Poland
| | - João Ameixa
- Institute of Chemistry, Hybrid Nanostructures, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, Germany
| | - Fábris Kossoski
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, F-31062 Toulouse, France
| | - Stephan Denifl
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, A-6020 Innsbruck, Austria
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Ameixa J, Arthur-Baidoo E, Pereira-da-Silva J, Ončák M, Ruivo J, Varella MDN, Ferreira da Silva F, Denifl S. Parent anion radical formation in coenzyme Q 0: Breaking ubiquinone family rules. Comput Struct Biotechnol J 2022; 21:346-353. [PMID: 36582437 PMCID: PMC9792397 DOI: 10.1016/j.csbj.2022.12.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 12/06/2022] [Accepted: 12/06/2022] [Indexed: 12/13/2022] Open
Abstract
We report electron attachment (EA) measurements for the parent anion radical formation from coenzyme Q0 (CoQ0) at low electron energies (<2 eV) along with quantum chemical calculations. CoQ0 may be considered a prototype for the electron withdrawing properties of the larger CoQ n molecules, in particular ubiquinone (CoQ10), an electron carrier in aerobic cell respiration. Herein, we show that the mechanisms for the parent anion radical formation of CoQ0 and CoQ n (n = 1,2,4) are remarkably distinct. Reported EA data for CoQ1, CoQ2, CoQ4 and para-benzoquinone indicated stabilization of the parent anion radicals around 1.2-1.4 eV. In contrast, we observe for the yield of the parent anion radical of CoQ0 a sharp peak at ∼ 0 eV, a shoulder at 0.07 eV and a peak around 0.49 eV. Although the mechanisms for the latter feature remain unclear, our calculations suggest that a dipole bound state (DBS) would account for the lower energy signals. Additionally, the isoprenoid side chains in CoQ n (n = 1,2,4) molecules seem to influence the DBS formation for these compounds. In contrast, the side chains enhance the parent anion radical stabilization around 1.4 eV. The absence of parent anion radical formation around 1.4 eV for CoQ0 can be attributed to the short auto-ionization lifetimes. The present results shed light on the underappreciated role played by the side chains in the stabilization of the parent anion radical. The isoprenoid tails should be viewed as co-responsible for the electron-accepting properties of ubiquinone, not mere spectators of electron transfer reactions.
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Affiliation(s)
- J. Ameixa
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
- CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
- Center for Molecular Biosciences (CMBI), Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - E. Arthur-Baidoo
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
- Center for Molecular Biosciences (CMBI), Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - J. Pereira-da-Silva
- CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - M. Ončák
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - J.C. Ruivo
- Institute of Physics, University of São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - M.T. do N. Varella
- Institute of Physics, University of São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - F. Ferreira da Silva
- CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - S. Denifl
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
- Center for Molecular Biosciences (CMBI), Leopold-Franzens Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
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Thiam G, Rabilloud F. Multi-Basis-Set (TD-)DFT Methods for Predicting Electron Attachment Energies. J Phys Chem Lett 2021; 12:9995-10001. [PMID: 34618456 DOI: 10.1021/acs.jpclett.1c02980] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The interaction of low-energy electron collisions with molecules may lead to temporary anions via resonant processes. While experimental measurements, e.g., electron transmission spectroscopy or dissociation electron attachment spectroscopy, are efficient to characterize the temporary anions, simulating the electron attachment is still very challenging. Here, we propose a methodology to calculate the resonance energies of the electron attachment using ab initio (TD)-DFT calculations together with two different basis sets: a large basis set with diffuse functions to compute the vertical electron affinity and a smaller one to calculate the excitation energy of the anion. To demonstrate the capabilities and the reliability of this computational approach, 53 resonance energies from 18 molecules are calculated and compared to experimental data.
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Affiliation(s)
- Guillaume Thiam
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, UMR5306, F-69622 Villeurbanne, France
| | - Franck Rabilloud
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, UMR5306, F-69622 Villeurbanne, France
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Pereira-da-Silva J, Mendes M, Kossoski F, Lozano AI, Rodrigues R, Jones NC, Hoffmann SV, Ferreira da Silva F. Perfluoro effect on the electronic excited states of para-benzoquinone revealed by experiment and theory. Phys Chem Chem Phys 2021; 23:2141-2153. [PMID: 33437976 DOI: 10.1039/d0cp05626j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a comprehensive study on the electronic excited states of tetrafluoro-1,4-benzoquinone, through high-resolution vacuum ultraviolet photoabsorption spectroscopy and time-dependent density functional theory calculations performed within the nuclear ensemble approach. Absolute cross section values were experimentally determined in the 3.8-10.8 eV energy range. The present experimental results represent the highest resolution data yet reported for this molecule and reveal previously unresolved spectral structures. The interpretation of the results was made in close comparison with the available data for para-benzoquinone [Jones et al., J. Chem. Phys., 2017, 146, 184303]. While the dominant absorption features for both molecules arise from analogous π* ← π transitions, some remarkable differences have been identified. The perfluoro effect manifests in different ways: shifts in band positions and cross sections, appearance of features associated with excitations to σCF* orbitals, and spectrum broadening by quenching of either vibrational or Rydberg progressions. The level of agreement between experiment and theory is very satisfactory, yet that required the inclusion of nuclear quantum effects in the calculations. We have also discussed the role of temperature on the absorption spectrum, as well as the involvement of core-excited resonances in promoting dissociative electron attachment reactions in the 3-5 eV range.
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Affiliation(s)
- J Pereira-da-Silva
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal.
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Thodika M, Fennimore M, Karsili TNV, Matsika S. Comparative study of methodologies for calculating metastable states of small to medium-sized molecules. J Chem Phys 2019; 151:244104. [DOI: 10.1063/1.5134700] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- Mushir Thodika
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Mark Fennimore
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Tolga N. V. Karsili
- Department of Chemistry, University of Louisiana, Lafayette, Louisiana 70504, USA
| | - Spiridoula Matsika
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
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Mensa-Bonsu G, Wilson MR, Tozer DJ, Verlet JRR. Photoelectron spectroscopy of para-benzoquinone cluster anions. J Chem Phys 2019; 151:204302. [PMID: 31779316 DOI: 10.1063/1.5132391] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
The photoelectron spectra of para-benzoquinone radical cluster anions, (pBQ)n - (n = 2-4), taken at hv = 4.00 eV are presented and compared with the photoelectron spectrum of the monomer (n = 1). For all clusters, a direct detachment peak can be identified, and the incremental increase in the vertical detachment energy of ∼0.4 eV n-1 predominantly reflects the increase in cohesion energy as the cluster size increases. For all clusters, excitation also leads to low energy electrons that are produced by thermionic emission from ground electronic state anionic species, indicating that resonances are excited at this photon energy. For n = 3 and 4, photoelectron features at lower binding energy are observed which can be assigned to photodetachment from pBQ- for n = 3 and both pBQ- and (pBQ)2 - for n = 4. These observations indicate that the cluster dissociates on the time scale of the laser pulse (∼5 ns). The present results are discussed in the context of related quinone cluster anions.
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Affiliation(s)
- Golda Mensa-Bonsu
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Mark R Wilson
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - David J Tozer
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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Mensa-Bonsu G, Tozer DJ, Verlet JRR. Photoelectron spectroscopic study of I -·ICF 3: a frontside attack S N2 pre-reaction complex. Phys Chem Chem Phys 2019; 21:13977-13985. [PMID: 30534728 DOI: 10.1039/c8cp06593d] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photodetachment and 2D photoelectron spectra of the mass-selected I-·CF3I complex are presented together with electronic structure calculations. Calculations show that the I- is located at the iodine side of CF3I. Vertical and adiabatic detachment energies were measured at 4.03 and approximately 3.8 eV, respectively. The photoelectron spectra and molecular orbitals show a significant covalent bonding character in the cluster. The presence of electronic excited states is observed. Below threshold, iodide is generated which can be assigned to the photoexcitation of degenerate charge-transfer bands from the off-axis p-orbitals localised on iodide. Near the onset of two spin-orbit thresholds, bright excited states are seen in the experiment and calculations. Excitation of these leads to the formation of slow electrons. The spectroscopy of I-·CF3I is compared to the well-studied I-·CH3I cluster, a pre-reaction complex in the text-book I- + CH3I SN2 reaction. Despite the reversed stereodynamics (i.e. inversion of the CX3 between X = H and F) of the SN2 reaction, striking similarities are seen. Both complexes possess charge transfer excited states near their respective vertical detachment energies and exhibit vibrational structure in their photoelectron spectra. The strong binding is consistent with observations in crossed molecular beam studies and molecular dynamics simulations that suggest that iodine as a leaving group in an SN2 reaction affects the reaction dynamics.
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da Costa RF, Ruivo JC, Kossoski F, Varella MTDN, Bettega MHF, Jones DB, Brunger MJ, Lima MAP. An ab initio investigation for elastic and electronically inelastic electron scattering from para-benzoquinone. J Chem Phys 2018; 149:174308. [DOI: 10.1063/1.5050622] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- R. F. da Costa
- Centro de Ciências Exatas, Departamento de Física, Universidade Federal do Espírito Santo, 29075-910 Vitória, Espírito Santo, Brazil
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - J. C. Ruivo
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - F. Kossoski
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
| | - M. T. do N. Varella
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1731, 05508-090 São Paulo, Brazil
| | - M. H. F. Bettega
- Departamento de Física, Universidade Federal do Paraná, CP 19044, 81531-990 Curitiba, Paraná, Brazil
| | - D. B. Jones
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M. J. Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia
| | - M. A. P. Lima
- Instituto de Física “Gleb Wataghin”, Universidade Estadual de Campinas, 13083-859 Campinas, São Paulo, Brazil
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Lozano AI, Oller JC, Jones DB, da Costa RF, Varella MTDN, Bettega MHF, Ferreira da Silva F, Limão-Vieira P, Lima MAP, White RD, Brunger MJ, Blanco F, Muñoz A, García G. Total electron scattering cross sections from para-benzoquinone in the energy range 1-200 eV. Phys Chem Chem Phys 2018; 20:22368-22378. [PMID: 30129642 DOI: 10.1039/c8cp03297a] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Total electron scattering cross sections, from para-benzoquinone, for impact energies ranging between 1 to 200 eV, have been obtained by measuring the attenuation of a linear electron beam under magnetic confinement conditions. Random uncertainty limits on these values have been found to be within 5%. Systematic errors, due to the axial magnetic beam conditions in combination with the acceptance angle of the detector, have been evaluated by integrating our calculated independent atom model with the screening corrected additivity rule and interference term elastic differential cross sections over that detection acceptance angle. Our previous calculations and measurements on this molecule (Jones et al., J. Chem. Phys., 2018, 148, 124312 and J. Chem. Phys., 2018, 148, 204305), have been compiled and complemented with new elastic and inelastic scattering cross section calculations in order to obtain a comprehensive cross section data base, within the considered energy range, for modelling purposes. The self-consistency of the present data set has been evaluated by simulating the electron transport of 15 eV electrons in para-benzoquinone, and comparing those results with the observed transmitted intensity distribution.
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Affiliation(s)
- A I Lozano
- Instituto de Fisica Fundamental, CSIC, Serrano 113-bis, E-28006 Madrid, Spain.
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Meneses G, Widmann C, Cunha T, Gil A, Ferreira da Silva F, Calhorda MJ, Limão-Vieira P. Unravelling the dissociation pathways of acetic acid upon electron transfer in potassium collisions: experimental and theoretical studies. Phys Chem Chem Phys 2018; 19:1083-1088. [PMID: 27942639 DOI: 10.1039/c6cp06375f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electron transfer in alkali-molecule collisions with gas phase acetic acid and its deuterated analogues resulting in OH- formation requires considerable internal rearrangement in the temporary negative ion. At a collision energy well above the threshold of negative ion formation, electron transfer from potassium to CH3COOH/CH3COOD and CD3COOH results not only in H transfer from CH3 to COOH/COOD, but also in H release from COOH and subsequent rearrangement to eliminate OH-. These processes are also investigated by theoretical post-Hartree-Fock and DFT calculations. The combination of both studies reveals that the most favourable intermediate mechanism occurs via diol formation. Such intramolecular H transfer is reported here for the first time in the context of electron transfer induced dissociation experiments in alkali-molecule collisions. A comprehensive fragmentation study is presented and dissociation mechanisms are suggested.
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Affiliation(s)
- G Meneses
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa Campus de Caparica, 2829-516 Caparica, Portugal.
| | - C Widmann
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa Campus de Caparica, 2829-516 Caparica, Portugal.
| | - T Cunha
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa Campus de Caparica, 2829-516 Caparica, Portugal.
| | - A Gil
- Centro de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.
| | - F Ferreira da Silva
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa Campus de Caparica, 2829-516 Caparica, Portugal.
| | - M J Calhorda
- Centro de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.
| | - P Limão-Vieira
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa Campus de Caparica, 2829-516 Caparica, Portugal.
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Loupas A, Gorfinkiel JD. Resonances in low-energy electron scattering from para-benzoquinone. Phys Chem Chem Phys 2017; 19:18252-18261. [DOI: 10.1039/c7cp02916k] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Shape and core-excited resonances ofpara-benzoquinone identified and characterized in electron scatteringR-matrix calculations.
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Affiliation(s)
- Alexandra Loupas
- School of Physical Sciences
- The Open University
- Milton Keynes
- UK
- Departamento de Física, Faculdade de Ciências e Tecnologia
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Cheng HY, Chen YC, Lin CJ, Liu WC, Hsieh SH. Temporary anion states of radiosensitive halopyrimidines: Shape and core-excited resonances. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2015.10.031] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Kunitsa AA, Bravaya KB. First-Principles Calculations of the Energy and Width of the (2)A(u) Shape Resonance in p-Benzoquinone: A Gateway State for Electron Transfer. J Phys Chem Lett 2015; 6:1053-1058. [PMID: 26262869 DOI: 10.1021/acs.jpclett.5b00207] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Quinones are versatile biological electron acceptors and mobile electron carriers in redox processes. We present the first ab initio calculations of the width of the (2)A(u) shape resonance in the para-benzoquinone anion, the simplest member of the quinone family. This resonance state located at 2.5 eV above the ground state of the anion is believed to be a gateway state for electron attachment in redox processes involving quinones. We employ the equation-of-motion coupled-cluster method for electron affinity augmented by a complex-absorbing potential (CAP-EOM-EA-CCSD) to calculate the resonance position and width. The calculated width, 0.013 eV, is in excellent agreement with the width of the resonant peak in the photodetachment spectrum, thus supporting the assignment of the band to resonance excitation to the autodetaching (2)A(u) state. The methodological aspects of CAP-EOM-EA-CCSD calculations of resonances positions and widths in medium-sized molecules, such as basis set and CAP box size effects, are also discussed.
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Affiliation(s)
- Alexander A Kunitsa
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Ksenia B Bravaya
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
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