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Pfister S, Lesieur J, Bourdoncle P, Elhassan M, Didier P, Anton N, Anton H, Collot M. Red-Emitting Pyrrolyl Squaraine Molecular Rotor Reports Variations of Plasma Membrane and Vesicular Viscosity in Fluorescence Lifetime Imaging. Anal Chem 2024; 96:12784-12793. [PMID: 39066698 DOI: 10.1021/acs.analchem.4c02145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
The viscosity that ensures the controlled diffusion of biomolecules in cells is a crucial biophysical parameter. Consequently, fluorescent probes capable of reporting viscosity variations are valuable tools in bioimaging. In this field, red-shifted probes are essential, as the widely used and gold standard probe remains green-emitting molecular rotors based on BODIPY. Here, we demonstrate that pyrrolyl squaraines, red-emissive fluorophores, exhibit high sensitivity over a wide viscosity range from 30 to 4890 mPa·s. Upon alkylation of the pyrrole moieties, the probes improve their sensitivity to viscosity through an enhanced twisted intramolecular charge transfer phenomenon. We utilized this scaffold to develop a plasma membrane probe, pSQ-PM, that efficiently stains the plasma membrane in a fluorogenic manner. Using fluorescence lifetime imaging, pSQ-PM enabled efficient sensing of viscosity variations in the plasma membrane under various conditions and in different cell lines (HeLa, U2OS, and NIH/3T3). Moreover, upon incubation, pSQ-PM stained the membrane of intracellular vesicles and suggested that the lysosomal membranes displayed enhanced fluidity.
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Affiliation(s)
- Sonia Pfister
- Chemistry of Photoresponsive Systems, Laboratoire de Chémo-Biologie Synthétique et Thérapeutique (CBST) UMR 7199, CNRS, Université de Strasbourg, F-67400 Illkirch, France
| | - Julie Lesieur
- Université Paris Cité, CNRS, Inserm, Institut Cochin, F-75014 Paris, France
| | - Pierre Bourdoncle
- Université Paris Cité, CNRS, Inserm, Institut Cochin, F-75014 Paris, France
| | - Mohamed Elhassan
- Université de Strasbourg, INSERM, Regenerative Nanomedicine UMR 1260, Centre de Recherche en Biomédecine de Strasbourg (CRBS), F-67000 Strasbourg, France
- Department of Pharmaceutics, Faculty of Pharmacy, University of Gezira, Wad Medani 21111, Sudan
| | - Pascal Didier
- Laboratoire de Bioimagerie et Pathologies, UMR 7021, CNRS, Université de Strasbourg, 74 route du Rhin, 67401 Illkirch, Graffenstaden, France
| | - Nicolas Anton
- Université de Strasbourg, INSERM, Regenerative Nanomedicine UMR 1260, Centre de Recherche en Biomédecine de Strasbourg (CRBS), F-67000 Strasbourg, France
| | - Halina Anton
- Laboratoire de Bioimagerie et Pathologies, UMR 7021, CNRS, Université de Strasbourg, 74 route du Rhin, 67401 Illkirch, Graffenstaden, France
| | - Mayeul Collot
- Chemistry of Photoresponsive Systems, Laboratoire de Chémo-Biologie Synthétique et Thérapeutique (CBST) UMR 7199, CNRS, Université de Strasbourg, F-67400 Illkirch, France
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2
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Ma J, Sun R, Xia K, Xia Q, Liu Y, Zhang X. Design and Application of Fluorescent Probes to Detect Cellular Physical Microenvironments. Chem Rev 2024; 124:1738-1861. [PMID: 38354333 DOI: 10.1021/acs.chemrev.3c00573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2024]
Abstract
The microenvironment is indispensable for functionality of various biomacromolecules, subcellular compartments, living cells, and organisms. In particular, physical properties within the biological microenvironment could exert profound effects on both the cellular physiology and pathology, with parameters including the polarity, viscosity, pH, and other relevant factors. There is a significant demand to directly visualize and quantitatively measure the fluctuation in the cellular microenvironment with spatiotemporal resolution. To satisfy this need, analytical methods based on fluorescence probes offer great opportunities due to the facile, sensitive, and dynamic detection that these molecules could enable in varying biological settings from in vitro samples to live animal models. Herein, we focus on various types of small molecule fluorescent probes for the detection and measurement of physical parameters of the microenvironment, including pH, polarity, viscosity, mechanical force, temperature, and electron potential. For each parameter, we primarily describe the chemical mechanisms underlying how physical properties are correlated with changes of various fluorescent signals. This review provides both an overview and a perspective for the development of small molecule fluorescent probes to visualize the dynamic changes in the cellular environment, to expand the knowledge for biological process, and to enrich diagnostic tools for human diseases.
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Affiliation(s)
- Junbao Ma
- Department of Chemistry and Research Center for Industries of the Future, Westlake University, 600 Dunyu Road, Hangzhou 310030, Zhejiang Province, China
- Westlake Laboratory of Life Sciences and Biomedicine, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China
- Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou 310030, Zhejiang Province, China
| | - Rui Sun
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
- University of the Chinese Academy of Sciences, 19 A Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Kaifu Xia
- Department of Chemistry and Research Center for Industries of the Future, Westlake University, 600 Dunyu Road, Hangzhou 310030, Zhejiang Province, China
- Westlake Laboratory of Life Sciences and Biomedicine, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China
- Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou 310030, Zhejiang Province, China
| | - Qiuxuan Xia
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
- University of the Chinese Academy of Sciences, 19 A Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Yu Liu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
- State Key Laboratory of Medical Proteomics, National Chromatographic R. & A. Center, Chinese Academy of Sciences Dalian Liaoning 116023, China
| | - Xin Zhang
- Department of Chemistry and Research Center for Industries of the Future, Westlake University, 600 Dunyu Road, Hangzhou 310030, Zhejiang Province, China
- Westlake Laboratory of Life Sciences and Biomedicine, 18 Shilongshan Road, Hangzhou 310024, Zhejiang Province, China
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3
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Paez-Perez M, Dent MR, Brooks NJ, Kuimova MK. Viscosity-Sensitive Membrane Dyes as Tools To Estimate the Crystalline Structure of Lipid Bilayers. Anal Chem 2023; 95:12006-12014. [PMID: 37526607 PMCID: PMC10433245 DOI: 10.1021/acs.analchem.3c01747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 07/12/2023] [Indexed: 08/02/2023]
Abstract
Lipid membranes are crucial for cellular integrity and regulation, and tight control of their structural and mechanical properties is vital to ensure that they function properly. Fluorescent probes sensitive to the membrane's microenvironment are useful for investigating lipid membrane properties; however, there is currently a lack of quantitative correlation between the exact parameters of lipid organization and a readout from these dyes. Here, we investigate this relationship for "molecular rotors", or microviscosity sensors, by simultaneously measuring their fluorescence lifetime to determine the membrane viscosity, while using X-ray diffraction to determine the membrane's structural properties. Our results reveal a phase-dependent correlation between the membrane's structural parameters and mechanical properties measured by a BODIPY-based molecular rotor, giving excellent predictive power for the structural descriptors of the lipid bilayer. We also demonstrate that differences in membrane thickness between different lipid phases are not a prerequisite for the formation of lipid microdomains and that this requirement can be disrupted by the presence of line-active molecules. Our results underpin the use of membrane-sensitive dyes as reporters of the structure of lipid membranes.
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Affiliation(s)
- Miguel Paez-Perez
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
| | - Michael R. Dent
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
| | - Nicholas J. Brooks
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
| | - Marina K. Kuimova
- MSRH, Department of Chemistry, Imperial College London, Wood Lane, London W12 0BZ, U.K.
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4
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Dwivedi BK, Dwivedi AD, Pandey DS. BODIPY-Based Multichromophoric Tripodal System as a Multifunctional Material. J Phys Chem B 2022; 126:8279-8289. [PMID: 36217611 DOI: 10.1021/acs.jpcb.2c04712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The strategic design, synthesis, and thorough characterizations of a redox-active BODIPY-based tripodal system (tri-BDP) displaying efficient aggregation-induced emission (AIE), great sensitivity toward the viscosity of a medium, ability for triplet photosensitization, singlet oxygen generation, and photooxidation have been described. The photophysical properties of tri-BDP in various solvents and in the solid state have been extensively investigated. It displayed efficient AIE and green (∼520) emission in acetonitrile/ether mixture and red (∼621 nm) emission in the solid state. Detailed viscosity-dependent studies suggested that it can act as a fluorescent molecular rotor. Triplet photosensitization, singlet oxygen generation, and photooxidation studies in the presence of 1,3-diphenylisobenzofuran and 1,5-dihydroxyl naphthalene suggested its high efficiency toward intersystem crossing and singlet oxygen generation. Detailed electrochemical investigations suggested the redox activity of the system. Hence, this system represents multifunctional features and can be applied as a functional material for various applications.
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Affiliation(s)
- Bhupendra Kumar Dwivedi
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi221005 (UP), India.,Madhya Pradesh Medicolegal Institute, Bhopal462001, India
| | - Ambikesh Dhar Dwivedi
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi221005 (UP), India
| | - Daya Shankar Pandey
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi221005 (UP), India
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5
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Application of Genetically Encoded Photoconvertible Protein SAASoti for the Study of Enzyme Activity in a Single Live Cell by Fluorescence Correlation Microscopy. MATERIALS 2022; 15:ma15144962. [PMID: 35888428 PMCID: PMC9316514 DOI: 10.3390/ma15144962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 07/11/2022] [Accepted: 07/13/2022] [Indexed: 12/07/2022]
Abstract
Fluorescent Correlation Spectroscopy (FCS) allows us to determine interactions of labeled proteins or changes in the oligomeric state. The FCS method needs a low amount of fluorescent dye, near nanomolar concentrations. To control the amount of fluorescent dye, we used new photoconvertible FP SAASoti. This work is devoted to the proof of principle of using photoconvertible proteins to measure caspase enzymatic activity in a single live cell. The advantage of this approach is that partial photoconversion of the FP makes FCS measurements possible when studying enzymatic reactions. To investigate the process, in vivo we used HeLa cell line expressing the engineered FRET sensor, SAASoti-23-KFP. This FRET sensor has a cleavable (DEVD) sequence in the linker between two FPs for the detection of one of the key enzymes of apoptosis, caspase-3. Caspase-3 activity was detected by registering the increase in the fluorescent lifetimes of the sensor, whereas the diffusion coefficient of SAASoti decreased. This can be explained by an increase in the total cell viscosity during apoptosis. We can suppose that in the moment of detectible caspase-3 activity, cell structure already has crucial changes in viscosity.
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6
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Antina EV, Berezin MB, V’yugin AI, Guseva GB, Bumagina NA, Antina LA, Ksenofontov AA, Nuraneeva EN, Kalyagin AA, Bocharov PS, Lukanov MM, Krasovskaya ZS, Kalinkina VA, Dogadaeva SA. Chemistry and Practical Application of Dipyrromethene Ligands, Salts, and Coordination Compounds as Optical Sensors for Analytes of Various Nature (A Review). RUSS J INORG CHEM+ 2022. [DOI: 10.1134/s0036023622030032] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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7
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Pan X, Wang C, Zhao C, Cheng T, Zheng A, Cao Y, Xu K. Assessment of cancer cell migration using a viscosity-sensitive fluorescent probe. Chem Commun (Camb) 2022; 58:4663-4666. [PMID: 35319548 DOI: 10.1039/d1cc07235h] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
A novel viscosity probe (NV1) was developed for assessing cancer cell migration. NV1 can respond to changes of viscosity rapidly and exhibits high sensitivity in HepG2 cells treated with starvation, rotenone and nystatin. Importantly, NV1 was used for the first time to evaluate the relationship between intracellular viscosity changes and cancer cell migration and proved that increased intracellular viscosity inhibits cell migration while decreased intracellular viscosity promotes cell migration.
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Affiliation(s)
- Xiaohong Pan
- College of Chemistry, Chemical Engineering and Materials Science, Key Laboratory of Molecular and Nano Probes, Ministry of Education, Collaborative Innovation Center of Functionalized Probes for Chemical Imaging in Universities of Shandong, Shandong Normal University, Jinan 250014, P. R. China. .,School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Cheng Wang
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Congcong Zhao
- College of Chemistry, Chemical Engineering and Materials Science, Key Laboratory of Molecular and Nano Probes, Ministry of Education, Collaborative Innovation Center of Functionalized Probes for Chemical Imaging in Universities of Shandong, Shandong Normal University, Jinan 250014, P. R. China.
| | - Tingting Cheng
- School of Pharmacy, Binzhou Medical University, Yantai 264003, China
| | - Aishan Zheng
- College of Chemistry, Chemical Engineering and Materials Science, Key Laboratory of Molecular and Nano Probes, Ministry of Education, Collaborative Innovation Center of Functionalized Probes for Chemical Imaging in Universities of Shandong, Shandong Normal University, Jinan 250014, P. R. China.
| | - Yuru Cao
- The 2nd Medical College of Binzhou Medical University, Yantai 264003, China
| | - Kehua Xu
- College of Chemistry, Chemical Engineering and Materials Science, Key Laboratory of Molecular and Nano Probes, Ministry of Education, Collaborative Innovation Center of Functionalized Probes for Chemical Imaging in Universities of Shandong, Shandong Normal University, Jinan 250014, P. R. China.
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8
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Antina LA, Kalyagin AA, Ksenofontov AA, Pavelyev RS, Lodochnikova OA, Islamov DR, Berezin MB, Antina EV. Effects of ms-aryl substitution on the structure and spectral properties of new CH(Ar)-bis(BODIPY) luminophores. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 265:120393. [PMID: 34597923 DOI: 10.1016/j.saa.2021.120393] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 09/03/2021] [Accepted: 09/07/2021] [Indexed: 06/13/2023]
Abstract
In this article, we present synthesis, spectral characteristics, and results of DFT calculations of new CH(R)-bis(BODIPY) 1-3. They are characterized by the conformational mobility and sensitivity of fluorescence to polarity, proton-, electron donor ability and viscosity of the solvation environment. It is shown that fluorescence intensity of 1-3 increases in the homologous series of alcohols (ethanol, 1-propanol, 1-butanol, 1-octanol, 1-decanol) mainly due to decrease of medium acidic properties. The viscosity of the medium effects on the 1-3 fluorescence in a lesser degree. Compared to 1 and 2, the 3 is the most sensitive towards viscosity both in low-viscosity homologous alcohols and in high-viscosity ethanol-glycerol mixtures. In this regard, the sensitivity of fluorescence of CH(MeOPh)-bis(BODIPY) (compound 3) to the viscosity was studied in binary mixtures of polar DMF and low-polarity toluene with castor and vaseline oils, as well as to the macroviscosity of the solvate environment in mixtures of toluene with polystyrene. Prospects of the practical application of CH(R)-bis(BODIPY)s are proposed for the analysis of polarity, proton-donor properties and viscosity of the medium.
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Affiliation(s)
- Lubov A Antina
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Str., 153045 Ivanovo, Russia.
| | - Alexander A Kalyagin
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Str., 153045 Ivanovo, Russia
| | - Alexander A Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Str., 153045 Ivanovo, Russia
| | - Roman S Pavelyev
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russian Federation
| | - Olga A Lodochnikova
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russian Federation; Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzov, 420088 Kazan, Russian Federation
| | - Daut R Islamov
- Kazan Federal University, 18 Kremlyovskaya st., 420008 Kazan, Russian Federation; Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzov, 420088 Kazan, Russian Federation
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Str., 153045 Ivanovo, Russia
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Str., 153045 Ivanovo, Russia
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9
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McTiernan CD, Zuñiga-Bustos M, Rosales-Rojas R, Barrias P, Griffith M, Poblete H, Sherin PS, López-Duarte I, Kuimova MK, Alarcon EI. Molecular rotors as reporters for viscosity of solutions of collagen like peptides. Phys Chem Chem Phys 2021; 23:24545-24549. [PMID: 34704576 DOI: 10.1039/d1cp04398f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have studied the suitability of using a molecular rotor-based steady-state fluorometric assay for evaluating changes in both the conformation and the viscosity of collagen-like peptide solutions. Our results indicate that a positive charge incorporated on the hydrophobic tail of the BODIPY molecular rotor favours the dye specificity as a reporter for viscosity of these solutions.
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Affiliation(s)
- Christopher D McTiernan
- Division of Cardiac Surgery, University of Ottawa Heart Institute, 40 Ruskin Street, Ottawa, Canada.
| | - Matias Zuñiga-Bustos
- Departamento de Bioinformática, Centro de Bioinformática, Simulación y Modelado (CBSM), Facultad de Ingeniería, Universidad de Talca, Campus Talca, 1 Poniente No. 1141, Casilla 721, Talca, Chile
| | - Roberto Rosales-Rojas
- Departamento de Bioinformática, Centro de Bioinformática, Simulación y Modelado (CBSM), Facultad de Ingeniería, Universidad de Talca, Campus Talca, 1 Poniente No. 1141, Casilla 721, Talca, Chile.,Doctorado en ciencias Mención Modelado de Sistemas Químicos y Biológicos, Facultad de Ingeniería, Universidad de Talca, Campus Talca, 1 Poniente No. 1141, Casilla 721, Talca, Chile
| | - Pablo Barrias
- Departamento de Ciencias del Ambiente, Facultad de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - May Griffith
- Centre de Recherche Hôpital Maisonneuve-Rosemont, Montréal, QC, Canada.,Département d'ophtalmologie, Université de Montréal, Montréal, QC, Canada
| | - Horacio Poblete
- Departamento de Bioinformática, Centro de Bioinformática, Simulación y Modelado (CBSM), Facultad de Ingeniería, Universidad de Talca, Campus Talca, 1 Poniente No. 1141, Casilla 721, Talca, Chile.,Millennium Nucleus of Ion Channels-Associated Diseases (MiNICAD), Universidad de Talca, Talca, Chile
| | - Peter S Sherin
- Chemistry Department, Molecular Sciences Research Hub, Imperial College London, 82 Wood Lane, London W12 0BZ, UK
| | - Ismael López-Duarte
- Chemistry Department, Molecular Sciences Research Hub, Imperial College London, 82 Wood Lane, London W12 0BZ, UK
| | - Marina K Kuimova
- Chemistry Department, Molecular Sciences Research Hub, Imperial College London, 82 Wood Lane, London W12 0BZ, UK
| | - Emilio I Alarcon
- Division of Cardiac Surgery, University of Ottawa Heart Institute, 40 Ruskin Street, Ottawa, Canada. .,Department of Biochemistry, Microbiology, and Immunology, Faculty of Medicine, University of Ottawa, Ottawa, Canada
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10
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Cheng J, Li Z, Lin W. Development of a one-step synthesized red emission fluorescent probe for sensitive detection of viscosity in vitro and in vivo. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 258:119808. [PMID: 33895656 DOI: 10.1016/j.saa.2021.119808] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 04/04/2021] [Accepted: 04/06/2021] [Indexed: 06/12/2023]
Abstract
Diseases caused by metabolic abnormalities, such as inflammation and fatty liver, which are characterized by high viscosity, so it is necessary to detect the change of viscosity in vivo and in vitro. Due to the advantages of high sensitivity, noninvasive detection, high selectivity and real-time imaging, fluorescence imaging has become an effective means to detect biological parameters of biomolecules and life systems. Therefore, we have prepared a red emitting fluorescent probe NBI-V with easy synthesis which can ensure that the probe can be developed for the widely used to detection of viscosity changes in vivo and in vitro. The probe NBI-V has good stability, high response times, selectivity, and good biocompatibility. As the viscosity of a water-glycerol system increased from 1.29 cp to 937.48 cp, the fluorescence of NBI-V was increased by about 77 times. Biological experiments showed that the probe NBI-V can target mitochondria, and the Pearson correlation coefficient was as high as 0.89. What's more, it can distinguish normal liver from fatty liver, and can detect the viscosity changes caused by inflammation in mice.
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Affiliation(s)
- Jie Cheng
- Guangxi Key Laboratory of Electrochemical Energy Materials, Institute of Optical Materials and Chemical Biology, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, PR China
| | - Zihong Li
- Guangxi Key Laboratory of Electrochemical Energy Materials, Institute of Optical Materials and Chemical Biology, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, PR China
| | - Weiying Lin
- Guangxi Key Laboratory of Electrochemical Energy Materials, Institute of Optical Materials and Chemical Biology, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, PR China.
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11
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Fam KT, Saladin L, Klymchenko AS, Collot M. Confronting molecular rotors and self-quenched dimers as fluorogenic BODIPY systems to probe biotin receptors in cancer cells. Chem Commun (Camb) 2021; 57:4807-4810. [PMID: 33982709 DOI: 10.1039/d1cc00108f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Probing receptors at the cell surface to monitor their expression level can be performed with fluorogenic dyes. Biotin receptors (BRs) are particularly interesting as they are overexpressed in cancer cells. Herein, to image BRs, we adapted and systematically compared two fluorogenic systems based on BODIPYs: a molecular rotor and a self-quenched dimer that light up in response to high viscosity and low polarity of the membrane, respectively. The fluorogenic dimer proved to be more efficient than the rotor and allowed BRs to be imaged in cancer cells, which can effectively be discriminated from non-cancer cells.
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Affiliation(s)
- Kyong T Fam
- Laboratoire de Bioimagerie et Pathologies, UMR 7021, CNRS/Université de Strasbourg, 74 route du Rhin, Illkirch-Graffenstaden 67401, France.
| | - Lazare Saladin
- Laboratoire de Bioimagerie et Pathologies, UMR 7021, CNRS/Université de Strasbourg, 74 route du Rhin, Illkirch-Graffenstaden 67401, France.
| | - Andrey S Klymchenko
- Laboratoire de Bioimagerie et Pathologies, UMR 7021, CNRS/Université de Strasbourg, 74 route du Rhin, Illkirch-Graffenstaden 67401, France.
| | - Mayeul Collot
- Laboratoire de Bioimagerie et Pathologies, UMR 7021, CNRS/Université de Strasbourg, 74 route du Rhin, Illkirch-Graffenstaden 67401, France.
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12
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Ma C, Hou S, Zhou X, Wang Z, Yoon J. Rational Design of Meso-Phosphino-Substituted BODIPY Probes for Imaging Hypochlorite in Living Cells and Mice. Anal Chem 2021; 93:9640-9646. [PMID: 34196178 DOI: 10.1021/acs.analchem.1c02025] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Meso-phosphino-substituted BODIPY probes were developed for concise and rapid detection of hypochlorite (ClO-). Interestingly, the probe BP gave a turn-on fluorescence response by shutting the photoinduced electron transfer (PET) effect and extending the coplanar conjugated π-system. In contrast, the probe TMBP showed a colorimetric response toward ClO-. The key role of the steric repulsions was revealed to be for altering the electronic distribution of the BODIPY core, resulting in these obviously different responses. Finally, the probe BP, with high selectivity and sensitivity toward ClO- (LOD = 1.9 nM; response time, <15 s), was further employed in imaging the variations of exogenous and endogenous hypochlorite (ClO-) in living RAW 264.7 cells and mouse inflammation models. If wisely utilized, this strategy with meso-phosphino BODIPY dyes may serve as a powerful platform for the preparation of novel chemosensors.
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Affiliation(s)
- Chunyu Ma
- Department of Chemistry, College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China
| | - Shumin Hou
- Department of Chemistry, College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China
| | - Xin Zhou
- Department of Chemistry, College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China
| | - Zonghua Wang
- Department of Chemistry, College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China.,Instrumental Analysis Center of Qingdao University, Shandong Sino-Japanese Center for Collaborative Research of Carbon Nanomaterials, Qingdao University, Qingdao 266071, China
| | - Juyoung Yoon
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 120-750, Korea
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13
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Dzyuba SV. BODIPY Dyes as Probes and Sensors to Study Amyloid-β-Related Processes. BIOSENSORS 2020; 10:E192. [PMID: 33260945 PMCID: PMC7760207 DOI: 10.3390/bios10120192] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 11/25/2020] [Accepted: 11/26/2020] [Indexed: 01/05/2023]
Abstract
Amyloid formation plays a major role in a number of neurodegenerative diseases, including Alzheimer's disease. Amyloid-β peptides (Aβ) are one of the primary markers associated with this pathology. Aβ aggregates exhibit a diverse range of morphologies with distinct pathological activities. Recognition of the Aβ aggregates by using small molecule-based probes and sensors should not only enhance understanding of the underlying mechanisms of amyloid formation, but also facilitate the development of therapeutic strategies to interfere with amyloid neurotoxicity. BODIPY (boron dipyrrin) dyes are among the most versatile small molecule fluorophores. BODIPY scaffolds could be functionalized to tune their photophysical properties to the desired ranges as well as to adapt these dyes to various types of conditions and environments. Thus, BODIPY dyes could be viewed as unique platforms for the design of probes and sensors that are capable of detecting and tracking structural changes of various Aβ aggregates. This review summarizes currently available examples of BODIPY dyes that have been used to investigate conformational changes of Aβ peptides, self-assembly processes of Aβ, as well as Aβ interactions with various molecules.
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Affiliation(s)
- Sergei V Dzyuba
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX 76129, USA
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14
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Novel mitochondria-targeted viscosity probe based on a fluorescent rotatable xanthene-hemicyanine dyad. Microchem J 2020. [DOI: 10.1016/j.microc.2020.105191] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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15
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Prasannan D, Vasu ST, Arunkumar C, Parameswaran P. Development of alkyne-BODIPYs as viscosity sensitive fluorescent probes for enumeration of bacterial cells. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424620500194] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We report a series of alkyne-functionalized meso-aryl boron dipyrrin (BODIPY) molecular rotors sensitive to viscosity. The planar and twisted conformation within the molecular structure decides the viscosity-dependent behavior. The variations in fluorescence lifetime and intensity were appreciable to the local viscosity. Hence, the dye has been successfully employed in the enumeration of microbes by considering the proportionate fluorescence intensity of the BODIPYs as an index of the number of cells per mL. With increasing cells per mL, the viscosity of the bacterial solution is increased. Consequently, the fluorescence intensity of the sample containing BODIPY tends to increase due to the restricted rotation in the viscous medium. The BODIPY probe offers high sensitivity and is easier than other conventional techniques of colony-forming unit (CFU) determination. The theoretical studies indicate that intramolecular charge transfer is responsible for the enhanced fluorescence intensity in a highly viscous solvent.
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Affiliation(s)
- Dijo Prasannan
- Bioinorganic Materials Research Laboratory, Department of Chemistry, National Institute of Technology Calicut, NIT Campus P.O., Calicut, India-673 601, India
| | - Suchithra Tharamel Vasu
- School of Biotechnology, National Institute of Technology Calicut, NIT Campus P.O., Calicut, India-673 601, India
| | - Chellaiah Arunkumar
- Bioinorganic Materials Research Laboratory, Department of Chemistry, National Institute of Technology Calicut, NIT Campus P.O., Calicut, India-673 601, India
| | - Pattiyil Parameswaran
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, National Institute of Technology Calicut, NIT Campus P.O., Calicut, India-673 601, India
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16
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Michels L, Gorelova V, Harnvanichvech Y, Borst JW, Albada B, Weijers D, Sprakel J. Complete microviscosity maps of living plant cells and tissues with a toolbox of targeting mechanoprobes. Proc Natl Acad Sci U S A 2020; 117:18110-18118. [PMID: 32669427 PMCID: PMC7395454 DOI: 10.1073/pnas.1921374117] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Mechanical patterns control a variety of biological processes in plants. The microviscosity of cellular structures effects the diffusion rate of molecules and organelles, thereby affecting processes such as metabolism and signaling. Spatial variations in local viscosity are also generated during fundamental events in the cell life cycle. While crucial to a complete understanding of plant mechanobiology, resolving subcellular microviscosity patterns in plants has remained an unsolved challenge. We present an imaging microviscosimetry toolbox of molecular rotors that yield complete microviscosity maps of cells and tissues, specifically targeting the cytosol, vacuole, plasma membrane, and wall of plant cells. These boron-dipyrromethene (BODIPY)-based molecular rotors are rigidochromic by means of coupling the rate of an intramolecular rotation, which depends on the mechanics of their direct surroundings, with their fluorescence lifetime. This enables the optical mapping of fluidity and porosity patterns in targeted cellular compartments. We show how apparent viscosity relates to cell function in the root, how the growth of cellular protrusions induces local tension, and how the cell wall is adapted to perform actuation surrounding leaf pores. These results pave the way to the noninvasive micromechanical mapping of complex tissues.
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Affiliation(s)
- Lucile Michels
- Physical Chemistry and Soft Matter, Wageningen University & Research, 6708 WE Wageningen, The Netherlands
| | - Vera Gorelova
- Laboratory of Biochemistry, Wageningen University & Research, 6708 WE Wageningen, The Netherlands
| | - Yosapol Harnvanichvech
- Physical Chemistry and Soft Matter, Wageningen University & Research, 6708 WE Wageningen, The Netherlands
- Laboratory of Biochemistry, Wageningen University & Research, 6708 WE Wageningen, The Netherlands
| | - Jan Willem Borst
- Laboratory of Biochemistry, Wageningen University & Research, 6708 WE Wageningen, The Netherlands
| | - Bauke Albada
- Laboratory of Organic Chemistry, Wageningen University & Research, 6708 WE Wageningen, The Netherlands
| | - Dolf Weijers
- Laboratory of Biochemistry, Wageningen University & Research, 6708 WE Wageningen, The Netherlands;
| | - Joris Sprakel
- Physical Chemistry and Soft Matter, Wageningen University & Research, 6708 WE Wageningen, The Netherlands;
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17
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A Review of the Real-Time Monitoring of Fluid-Properties in Tubular Architectures for Industrial Applications. SENSORS 2020; 20:s20143907. [PMID: 32674278 PMCID: PMC7412341 DOI: 10.3390/s20143907] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 07/06/2020] [Accepted: 07/10/2020] [Indexed: 01/30/2023]
Abstract
The real-time monitoring of fluid properties in tubular systems, such as viscosity and flow rate, is essential for industries utilizing liquid mediums. Nowadays, most studies of the fluid characteristics are performed off-line using laboratory facilities that can provide accurate results, yet they do not match the demanded industrial pace. Off-line measurements are ineffective and time-consuming. The available real-time monitoring sensors for fluid properties are generally destructive methods that produce significant and persistent damage to the tubular systems during the installation process. Others use huge and bulky invasive instrument methods that generate considerable pressure reduction and energy loss in tubular systems. For these drawbacks, industries centered their attention on non-invasive and non-destructive testing (NDT) methodologies, which are installed on the outer tubular surface to avoid flow disturbance and desist shutting down systems for installations. Although these sensors showed excellent achievement for monitoring and inspecting pipe health conditions, the performance was not convincing for monitoring the properties of fluids. This review paper presents an overview of the real-time monitoring of fluid properties in tubular systems for industrial applications, particularly for pipe monitoring sensors, viscosity, and flow measurements. Additionally, the different available sensing mechanisms and their advantages, drawbacks, and potentials are discussed.
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18
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The effect of protonation on the excited state dynamics of pyrimidine chromophores. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2020.112398] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Dwivedi BK, Singh VD, Kumar Y, Pandey DS. Photophysical properties of some novel tetraphenylimidazole derived BODIPY based fluorescent molecular rotors. Dalton Trans 2020; 49:438-452. [DOI: 10.1039/c9dt04177j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
In this work, we present tetraphenylimidazole-based BODIPYs (HPIB1–HPIB4) as fluorescent molecular rotors exhibiting aggregation induced emission, solid state fluorescence and appreciable sensitivity towards viscosity.
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Affiliation(s)
| | - Vishwa Deepak Singh
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi - 221 005
- India
| | - Yogesh Kumar
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi - 221 005
- India
| | - Daya Shankar Pandey
- Department of Chemistry
- Institute of Science
- Banaras Hindu University
- Varanasi - 221 005
- India
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20
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Li Y, Liu X, Han J, Cao B, Sun C, Diao L, Yin H, Shi Y. Solvent viscosity induces twisted intramolecular charge transfer state lifetime tunable of Thioflavin-T. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 222:117244. [PMID: 31203054 DOI: 10.1016/j.saa.2019.117244] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Revised: 06/05/2019] [Accepted: 06/05/2019] [Indexed: 06/09/2023]
Abstract
Excited-state deactivation dynamics of Thioflavin-T (ThT) in gradual viscosity solvents were investigated. Femtosecond transient absorption spectra and dynamic decay curves both present significant distinction of ThT in different volume ratios binary mixtures solvents. Dynamics fitting lifetime of twisted intramolecular charge transfer (TICT) state is strongly dependent on solvents viscosity. Compared to rotation corresponding time of ThT in low viscosity solvent (0.6 cp) experimentally coincident well with Stokes-Einstein-Debye (SED) equation, the relation between rotation corresponding time and relatively high viscosity (5.9 cp to 1091.2 cp) is more consistent with fractional SED equation. Combined with optimized geometric structures of ThT by density functional theory and time-dependent density functional theory, further understand TICT state lifetime increases with increasing solvents viscosity. Our work provides a comprehensive understanding of fluorescence molecular rotor (FMR) deactivation process in different viscosity solvents and is helpful to design new FMR.
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Affiliation(s)
- You Li
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Xiaochun Liu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Jianhui Han
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Bifa Cao
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Chaofan Sun
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Lihe Diao
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Hang Yin
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Ying Shi
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China.
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21
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van der Scheer P, van Zuijlen Q, Sprakel J. Rigidochromic conjugated polymers carrying main-chain molecular rotors. Chem Commun (Camb) 2019; 55:11559-11562. [PMID: 31495850 DOI: 10.1039/c9cc05713g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We design and prepare rigidochromic conjugated polymers that carry molecular rotors in the main chain. We show how a suitable design maintains the mechanosensitivity of the rotors upon incorporation into an extended π-conjugated system. Construction of donor-acceptor polymers enables their use as ratiometric probes for polymer micromechanics, which we evidence through micromechanical imaging of a phase-separated polymer blend.
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Affiliation(s)
- Pieter van der Scheer
- Physical Chemistry and Soft Matter, Wageningen University & Research, Stippeneng 4, 6708WE, Wageningen, The Netherlands.
| | - Quintin van Zuijlen
- Physical Chemistry and Soft Matter, Wageningen University & Research, Stippeneng 4, 6708WE, Wageningen, The Netherlands.
| | - Joris Sprakel
- Physical Chemistry and Soft Matter, Wageningen University & Research, Stippeneng 4, 6708WE, Wageningen, The Netherlands.
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22
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Wang H, Cai F, Zhou L, Li D, Feng D, Wei Y, Feng Z, Gu X, Li X, Wu Y. A series of water-soluble fluorescent probe for viscosity detection and their biological application. Polyhedron 2019. [DOI: 10.1016/j.poly.2019.06.015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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23
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Prasannan D, Sareena C, Arunkumar C, Vasu ST. Synthesis, structure, photophysical, electrochemical properties and antibacterial activity of brominated BODIPYs as an inhibitor of DNA gyrase B of S. aureus. J PORPHYR PHTHALOCYA 2019. [DOI: 10.1142/s1088424619500433] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
BODIPYs with 3-thienyl and 4-acetamido phenyl groups substituted at the meso-position are subjected to regioselective bromination using three equivalents of [Formula: see text]-bromosuccinimide (NBS) to yield their 2-mono and 2,6-di bromoderivatives. Their photophysical, electrochemical and antimicrobial properties are investigated. This paper presents a mechanistic investigation of the antibacterial effect of brominated BODIPYs, particularly against Staphylococcus aureus. Fluorescence microscopic images reveal that the compounds are internalized effectively within the bacterial cells, making it an ideal antibacterial drug. Morphological analysis of the bacterial cells after the treatment with the test compounds showed that the compounds did not affect the cell membrane or cell wall and the antibacterial effect of these compounds is achieved via a different mechanism. The most effective compound was selected to explore the target of action. Molecular docking studies were performed on 22 selected proteins in S. aureus and the in silico results were validated by in vitro experiments. It was observed that the supercoiling activity of DNA gyrase was completely inhibited by the 2,6-dibromo-1,3,5,7-tetramethyl-8-(4-acetamido)-4-bora-3a,4a-diaza-[Formula: see text]-indacene, 3c by forming H-bonds with the ASP 81 residue of the enzyme.
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Affiliation(s)
- Dijo Prasannan
- Bioinorganic Materials Research Laboratory, Department of Chemistry, National Institute of Technology Calicut, NIT Campus, P.O., Calicut, India-673 601, India
| | - Chennakkandathil Sareena
- School of Biotechnology, National Institute of Technology Calicut, NIT Campus, P.O., Calicut, India-673 601, India
| | - Chellaiah Arunkumar
- Bioinorganic Materials Research Laboratory, Department of Chemistry, National Institute of Technology Calicut, NIT Campus, P.O., Calicut, India-673 601, India
| | - Suchithra Tharamel Vasu
- School of Biotechnology, National Institute of Technology Calicut, NIT Campus, P.O., Calicut, India-673 601, India
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24
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Arroyo‐Pieck A, Araiza‐Olivera D, Peon J. Bichromophoric Sensors for Ratiometric Measurements of Molecular Microenvironments through the Interplay of Charge Transfer and Energy Transfer Channels. Chempluschem 2018; 83:1097-1108. [DOI: 10.1002/cplu.201800333] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Indexed: 01/15/2023]
Affiliation(s)
- Andres Arroyo‐Pieck
- Departamento de Fisicoquímica Instituto de Química, UNAM Circuito ExteriorCiudad Universitaria, México 04510 México
| | - Daniela Araiza‐Olivera
- Departamento de Química de Biomacromoléculas Instituto de Química, UNAM Circuito ExteriorCiudad Universitaria, México 04510 México
| | - Jorge Peon
- Departamento de Fisicoquímica Instituto de Química, UNAM Circuito ExteriorCiudad Universitaria, México 04510 México
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25
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Guo L, Zhang R, Sun Y, Tian M, Zhang G, Feng R, Li X, Yu X, He X. Styrylpyridine salts-based red emissive two-photon turn-on probe for imaging the plasma membrane in living cells and tissues. Analyst 2018; 141:3228-32. [PMID: 27160329 DOI: 10.1039/c6an00147e] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Based on styrylpyridine salts, a small-molecule red emitting membrane probe with large two-photon absorption cross-section has been synthesized. As a molecular rotor, it enables exclusive lighting up of the plasma membrane in live cells and particular tissues. This probe has the potential to be a powerful tool for bioimaging.
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Affiliation(s)
- Lifang Guo
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Ruoyao Zhang
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Yuming Sun
- School of Information Science and Engineering, Shandong University, Jinan 250100, P. R. China
| | - Minggang Tian
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Ge Zhang
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Ruiqing Feng
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Xuechen Li
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Xiaoqiang Yu
- Center of Bio & Micro/Nano Functional Materials, State Key Laboratory of Crystal Materials, Shandong University, Jinan 250100, P. R. China.
| | - Xiuquan He
- Department of Anatomy, Shandong University School of Medicine, Jinan 250012, P.R. China.
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26
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Wiens MD, Hoffmann F, Chen Y, Campbell RE. Enhancing fluorescent protein photostability through robot-assisted photobleaching. Integr Biol (Camb) 2018; 10:419-428. [PMID: 29897363 PMCID: PMC6047911 DOI: 10.1039/c8ib00063h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Improving fluorescent proteins through the use of directed evolution requires robust techniques for screening large libraries of genetic variants. Here we describe an effective and relatively low-cost system for screening libraries of fluorescent protein variants for improved photostability in the context of colonies on a Petri dish. Application of this system to the yellow fluorescent protein mCitrine, led to the development of Citrine2 with improved photostability and similar high fluorescent brightness. The photobleaching robot was constructed using a Lego Mindstorms Ev3 set and a xenon arc lamp, which together create even and high irradiance over an entire Petri dish through patterned illumination.
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Affiliation(s)
- M D Wiens
- A Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
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27
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Li LL, Li K, Li MY, Shi L, Liu YH, Zhang H, Pan SL, Wang N, Zhou Q, Yu XQ. BODIPY-Based Two-Photon Fluorescent Probe for Real-Time Monitoring of Lysosomal Viscosity with Fluorescence Lifetime Imaging Microscopy. Anal Chem 2018; 90:5873-5878. [DOI: 10.1021/acs.analchem.8b00590] [Citation(s) in RCA: 96] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Ling-Ling Li
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Kun Li
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Meng-Yang Li
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Lei Shi
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Yan-Hong Liu
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Hong Zhang
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Sheng-Lin Pan
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Nan Wang
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Qian Zhou
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Xiao-Qi Yu
- Key Laboratory of Green Chemistry and Technology (Ministry of Education), College of Chemistry, Sichuan University, Chengdu, 610064, China
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28
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Doan H, Castillo M, Bejjani M, Nurekeyev Z, Dzyuba SV, Gryczynski I, Gryczynski Z, Raut S. Solvatochromic dye LDS 798 as microviscosity and pH probe. Phys Chem Chem Phys 2018; 19:29934-29939. [PMID: 29090298 DOI: 10.1039/c7cp05874h] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Styryl dyes, specifically LDS group dyes, are known solvatochromic and electrochromic probes for monitoring mitochondrial potential in cellular environments. However, the ability of these dyes to respond to fluctuations in viscosity, pH and temperature has not been established. In this study, we demonstrated that LDS 798 (also known as Styryl-11) can sense environmental viscosity (via fluorescence lifetime changes) as well as pH changes (ratiometric intensity change) in the absence of polarity variations. Polarity changes can be probed by spectral changes using LDS 798. Therefore, all properties of the media should be considered, when these types of dyes are used as electrochromic/solvatochromic sensors in cellular environments.
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Affiliation(s)
- Hung Doan
- Department of Physics and Astronomy, Texas Christian University, Fort Worth, TX 76129, USA.
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29
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Nandi A, Kushwaha A, Das D, Ghosh R. Protonation-induced ultrafast torsional dynamics in 9-anthrylbenzimidazole: a pH activated molecular rotor. Phys Chem Chem Phys 2018; 20:7014-7020. [DOI: 10.1039/c7cp08408k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Protonation activated molecular rotor property is demonstrated in 9-anthrylbenzimidazole which probes a wide range of viscosity selectively at acidic pH (pH < 5).
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Affiliation(s)
- Amitabha Nandi
- Radiation and Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400085
- India
| | - Archana Kushwaha
- Department of Chemistry
- Institute of Chemical Technology
- Nathalal Parekh Marg
- Mumbai 400019
- India
| | - Dipanwita Das
- Department of Chemistry
- Institute of Chemical Technology
- Nathalal Parekh Marg
- Mumbai 400019
- India
| | - Rajib Ghosh
- Radiation and Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400085
- India
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30
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Lee SC, Lee CL, Heo J, Jeong CU, Lee GH, Kim S, Yoon W, Yun H, Park SO, Kwak SK, Park SH, Kwon OP. Molecular Viscosity Sensors with Two Rotators for Optimizing the Fluorescence Intensity-Contrast Trade-Off. Chemistry 2017; 24:2888-2897. [DOI: 10.1002/chem.201704036] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Indexed: 11/07/2022]
Affiliation(s)
- Seung-Chul Lee
- Department of Molecular Science and Technology; Ajou University; Suwon 443-749 Republic of Korea
| | - Chang-Lyoul Lee
- Advanced Photonics Research Institute (APRI); Gwangju Institute of Science and Technology (GIST); 123 Cheomdangwagi-ro, Buk-gu Gwangju 61005 Republic of Korea
| | - Jeongyun Heo
- Center for Theragnosis; Korea Institute of Science and Technology (KIST); 39-1 Hawolgok-dong, Seongbuk-gu Seoul 136-791 Republic of Korea
| | - Chan-Uk Jeong
- Department of Molecular Science and Technology; Ajou University; Suwon 443-749 Republic of Korea
| | - Gyeong-Hui Lee
- Department of Molecular Science and Technology; Ajou University; Suwon 443-749 Republic of Korea
| | - Sehoon Kim
- Center for Theragnosis; Korea Institute of Science and Technology (KIST); 39-1 Hawolgok-dong, Seongbuk-gu Seoul 136-791 Republic of Korea
| | - Woojin Yoon
- Department of Chemistry & Department of Energy Systems Research; Ajou University; Suwon 443-749 Republic of Korea
| | - Hoseop Yun
- Department of Chemistry & Department of Energy Systems Research; Ajou University; Suwon 443-749 Republic of Korea
| | - Sung O. Park
- School of Energy and Chemical Engineering; Ulsan National Institute of Science and Technology; 50 UNIST-gil Ulsan 44919 Republic of Korea
| | - Sang Kyu Kwak
- School of Energy and Chemical Engineering; Ulsan National Institute of Science and Technology; 50 UNIST-gil Ulsan 44919 Republic of Korea
| | - Sung-Ha Park
- Department of Applied Chemistry and Biological Engineering; Ajou University; Suwon 443-749 Republic of Korea
| | - O-Pil Kwon
- Department of Molecular Science and Technology; Ajou University; Suwon 443-749 Republic of Korea
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31
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Kumar K, Tarai M, Mishra AK. Unconventional steady-state fluorescence spectroscopy as an analytical technique for analyses of complex-multifluorophoric mixtures. Trends Analyt Chem 2017. [DOI: 10.1016/j.trac.2017.09.004] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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32
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Requena S, Ponomarchuk O, Castillo M, Rebik J, Brochiero E, Borejdo J, Gryczynski I, Dzyuba SV, Gryczynski Z, Grygorczyk R, Fudala R. Imaging viscosity of intragranular mucin matrix in cystic fibrosis cells. Sci Rep 2017; 7:16761. [PMID: 29196739 PMCID: PMC5711894 DOI: 10.1038/s41598-017-17037-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 11/20/2017] [Indexed: 01/02/2023] Open
Abstract
Abnormalities of mucus viscosity play a critical role in the pathogenesis of several respiratory diseases, including cystic fibrosis. Currently, there are no approaches to assess the rheological properties of mucin granule matrices in live cells. This is the first example of the use of a molecular rotor, a BODIPY dye, to quantitatively visualize the viscosity of intragranular mucin matrices in a large population of individual granules in differentiated primary bronchial epithelial cells using fluorescence lifetime imaging microscopy.
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Affiliation(s)
- Sebastian Requena
- University of North Texas Health Science Center, Department of Microbiology, Immunology & Genetics, Fort Worth, TX, 76107, USA
| | - Olga Ponomarchuk
- Centre de Recherche du CHUM (CRCHUM), Université de Montréal, Montréal, Québec, H2×0A9, Canada
- visiting graduate student from Moscow State University, Moscow, Russia
| | - Marlius Castillo
- Texas Christian University, Department of Chemistry and Biochemistry, Fort Worth, TX, 76129, USA
| | - Jonathan Rebik
- Texas Christian University, Department of Chemistry and Biochemistry, Fort Worth, TX, 76129, USA
| | - Emmanuelle Brochiero
- Centre de Recherche du CHUM (CRCHUM), Université de Montréal, Montréal, Québec, H2×0A9, Canada
- Département de Médecine, Université de Montréal, Montréal, Québec, H3T 1J4, Canada
| | - Julian Borejdo
- University of North Texas Health Science Center, Department of Microbiology, Immunology & Genetics, Fort Worth, TX, 76107, USA
| | - Ignacy Gryczynski
- University of North Texas Health Science Center, Department of Microbiology, Immunology & Genetics, Fort Worth, TX, 76107, USA
| | - Sergei V Dzyuba
- Texas Christian University, Department of Chemistry and Biochemistry, Fort Worth, TX, 76129, USA.
| | - Zygmunt Gryczynski
- University of North Texas Health Science Center, Department of Microbiology, Immunology & Genetics, Fort Worth, TX, 76107, USA
- Texas Christian University, Department of Physics and Astronomy, Fort Worth, TX, 76129, USA
| | - Ryszard Grygorczyk
- Centre de Recherche du CHUM (CRCHUM), Université de Montréal, Montréal, Québec, H2×0A9, Canada.
- Département de Médecine, Université de Montréal, Montréal, Québec, H3T 1J4, Canada.
| | - Rafal Fudala
- University of North Texas Health Science Center, Department of Microbiology, Immunology & Genetics, Fort Worth, TX, 76107, USA.
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33
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Ghosh R, Kushwaha A, Das D. Conformational Control of Ultrafast Molecular Rotor Property: Tuning Viscosity Sensing Efficiency by Twist Angle Variation. J Phys Chem B 2017; 121:8786-8794. [DOI: 10.1021/acs.jpcb.7b05947] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Rajib Ghosh
- Radiation
and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Archana Kushwaha
- Department
of Chemistry, Institute of Chemical Technology, Nathalal Parekh Marg, Matunga, Mumbai 400019, India
| | - Dipanwita Das
- Department
of Chemistry, Institute of Chemical Technology, Nathalal Parekh Marg, Matunga, Mumbai 400019, India
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34
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Shimolina LE, Izquierdo MA, López-Duarte I, Bull JA, Shirmanova MV, Klapshina LG, Zagaynova EV, Kuimova MK. Imaging tumor microscopic viscosity in vivo using molecular rotors. Sci Rep 2017; 7:41097. [PMID: 28134273 PMCID: PMC5278387 DOI: 10.1038/srep41097] [Citation(s) in RCA: 62] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Accepted: 12/12/2016] [Indexed: 01/02/2023] Open
Abstract
The microscopic viscosity plays an essential role in cellular biophysics by controlling the rates of diffusion and bimolecular reactions within the cell interior. While several approaches have emerged that have allowed the measurement of viscosity and diffusion on a single cell level in vitro, the in vivo viscosity monitoring has not yet been realized. Here we report the use of fluorescent molecular rotors in combination with Fluorescence Lifetime Imaging Microscopy (FLIM) to image microscopic viscosity in vivo, both on a single cell level and in connecting tissues of subcutaneous tumors in mice. We find that viscosities recorded from single tumor cells in vivo correlate well with the in vitro values from the same cancer cell line. Importantly, our new method allows both imaging and dynamic monitoring of viscosity changes in real time in live animals and thus it is particularly suitable for diagnostics and monitoring of the progress of treatments that might be accompanied by changes in microscopic viscosity.
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Affiliation(s)
- Lyubov’ E. Shimolina
- Institute of Biomedical Technologies, Nizhny Novgorod State Medical Academy, Minin and Pozharsky Square, 10/1, Nizhny Novgorod, 603005, Russia
- Institute of Biology and Biomedicine, Nizhny Novgorod State University, Gagarin Avenue, 23, Nizhny Novgorod, 603950, Russia
| | | | - Ismael López-Duarte
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK
| | - James A. Bull
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK
| | - Marina V. Shirmanova
- Institute of Biomedical Technologies, Nizhny Novgorod State Medical Academy, Minin and Pozharsky Square, 10/1, Nizhny Novgorod, 603005, Russia
| | - Larisa G. Klapshina
- Razuvaev Institute of Organometallic Chemistry RAS, Tropinina Street, 49, Nizhny Novgorod, 603950, Russia
| | - Elena V. Zagaynova
- Institute of Biomedical Technologies, Nizhny Novgorod State Medical Academy, Minin and Pozharsky Square, 10/1, Nizhny Novgorod, 603005, Russia
| | - Marina K. Kuimova
- Department of Chemistry, Imperial College London, South Kensington, London SW7 2AZ, UK
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35
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Zhou K, Ren M, Deng B, Lin W. Development of a viscosity sensitive fluorescent probe for real-time monitoring of mitochondria viscosity. NEW J CHEM 2017. [DOI: 10.1039/c7nj02270k] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Through rational design, two new mitochondria-targeted fluorescent viscosity probes were developed, which exhibited favorable properties such as large turn on fluorescence signal, good selectivity, low cytotoxicity, and high colocation coefficient (>0.90).
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Affiliation(s)
- Kai Zhou
- Institute of Fluorescent Probes for Biological Imaging, School of Chemistry and Chemical Engineering, School of Materials Science and Engineering, University of Jinan
- Jinan
- P. R. China
| | - Mingguang Ren
- Institute of Fluorescent Probes for Biological Imaging, School of Chemistry and Chemical Engineering, School of Materials Science and Engineering, University of Jinan
- Jinan
- P. R. China
| | - Beibei Deng
- Institute of Fluorescent Probes for Biological Imaging, School of Chemistry and Chemical Engineering, School of Materials Science and Engineering, University of Jinan
- Jinan
- P. R. China
| | - Weiying Lin
- Institute of Fluorescent Probes for Biological Imaging, School of Chemistry and Chemical Engineering, School of Materials Science and Engineering, University of Jinan
- Jinan
- P. R. China
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36
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Raut SL, Kimball JD, Fudala R, Bora I, Chib R, Jaafari H, Castillo MK, Smith NW, Gryczynski I, Dzyuba SV, Gryczynski Z. A triazine-based BODIPY trimer as a molecular viscometer. Phys Chem Chem Phys 2016; 18:4535-40. [PMID: 26795882 PMCID: PMC4755388 DOI: 10.1039/c5cp07214j] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Photophysical behaviour of a novel trimeric BODIPY rotor with a high extinction coefficient is reported.
Photophysical behaviour of a novel trimeric BODIPY rotor with a high extinction coefficient is reported. Steady state and time resolved fluorescence measurements established that the trimer could be used as a viscometer for molecular solvents, membrane-like environments and several cancer cell lines.
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Affiliation(s)
- Sangram L Raut
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Joseph D Kimball
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Rafal Fudala
- Department of Cell Biology and Immunology, University of North Texas Health Science Center, Fort Worth, TX 76129, USA
| | - Ilkay Bora
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA. and Department of Chemistry and Biochemistry, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Rahul Chib
- Department of Cell Biology and Immunology, University of North Texas Health Science Center, Fort Worth, TX 76129, USA
| | - Hana Jaafari
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Marlius K Castillo
- Department of Chemistry and Biochemistry, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Nicholas W Smith
- Department of Chemistry and Biochemistry, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Ignacy Gryczynski
- Department of Cell Biology and Immunology, University of North Texas Health Science Center, Fort Worth, TX 76129, USA
| | - Sergei V Dzyuba
- Department of Chemistry and Biochemistry, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
| | - Zygmunt Gryczynski
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University Dr., Fort Worth, TX 76129, USA.
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37
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Su D, Teoh CL, Gao N, Xu QH, Chang YT. A Simple BODIPY-Based Viscosity Probe for Imaging of Cellular Viscosity in Live Cells. SENSORS 2016; 16:s16091397. [PMID: 27589762 PMCID: PMC5038675 DOI: 10.3390/s16091397] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Revised: 08/23/2016] [Accepted: 08/26/2016] [Indexed: 12/25/2022]
Abstract
Intracellular viscosity is a fundamental physical parameter that indicates the functioning of cells. In this work, we developed a simple boron-dipyrromethene (BODIPY)-based probe, BTV, for cellular mitochondria viscosity imaging by coupling a simple BODIPY rotor with a mitochondria-targeting unit. The BTV exhibited a significant fluorescence intensity enhancement of more than 100-fold as the solvent viscosity increased. Also, the probe showed a direct linear relationship between the fluorescence lifetime and the media viscosity, which makes it possible to trace the change of the medium viscosity. Furthermore, it was demonstrated that BTV could achieve practical applicability in the monitoring of mitochondrial viscosity changes in live cells through fluorescence lifetime imaging microscopy (FLIM).
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Affiliation(s)
- Dongdong Su
- Singapore Bioimaging Consortium, Agency for Science, Technology and Research (A*STAR), Singapore 138667, Singapore.
| | - Chai Lean Teoh
- Singapore Bioimaging Consortium, Agency for Science, Technology and Research (A*STAR), Singapore 138667, Singapore.
| | - Nengyue Gao
- Department of Chemistry, National University of Singapore, Singapore 117543, Singapore.
| | - Qing-Hua Xu
- Department of Chemistry, National University of Singapore, Singapore 117543, Singapore.
| | - Young-Tae Chang
- Singapore Bioimaging Consortium, Agency for Science, Technology and Research (A*STAR), Singapore 138667, Singapore.
- Department of Chemistry, National University of Singapore, Singapore 117543, Singapore.
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38
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Castillo M, Raut SL, Price S, Bora I, Jameson LP, Qiu C, Schug KA, Gryczynski Z, Dzyuba SV. Spectroscopic differentiation between monomeric and aggregated forms of BODIPY dyes: Effect of 1,1-dichloroethane. RSC Adv 2016; 6:68705-68708. [PMID: 30918630 PMCID: PMC6433389 DOI: 10.1039/c6ra10833d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
1,1-Dichloroethane (1,1-DCE) can induce spectroscopic differentiation between aggregated and monomeric forms of BODIPY dyes.
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Affiliation(s)
- Marlius Castillo
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 6218
| | - Sangram L Raut
- Department of Physics and Astronomy, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 4309
| | - Sarah Price
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 6218
| | - Ilkay Bora
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 6218
- Department of Physics and Astronomy, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 4309
| | - Laramie P Jameson
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 6218
| | - Changling Qiu
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, TX 76019, USA
| | - Kevin A Schug
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, TX 76019, USA
| | - Zygmunt Gryczynski
- Department of Physics and Astronomy, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 4309
| | - Sergei V Dzyuba
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX 76129, USA; E-mail: ; Tel: +1 817 257 6218
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39
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Gupta N, Reja SI, Bhalla V, Gupta M, Kaur G, Kumar M. A bodipy based fluorescent probe for evaluating and identifying cancer, normal and apoptotic C6 cells on the basis of changes in intracellular viscosity. J Mater Chem B 2016; 4:1968-1977. [PMID: 32263074 DOI: 10.1039/c5tb02476e] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
The applications of a bodipy based probe 1 for the identification of diseased cell population out of normal cells on the basis of changes in intracellular viscosity have been explored. Probe 1 works on the principle of restriction of rotation in viscous medium and the molecular rotor nature of probe 1 is supported by low temperature 1H NMR and variable dihedral angle DFT and TD-DFT studies. More importantly, probe 1 is the first probe which shows its practical application in monitoring micro-viscosity changes in a cell based model system of undifferentiated, differentiated and apoptotic C6 glial cells. Further, probe 1 can effectively monitor the apoptosis pathway by showing an increase in fluorescence intensity from cancerous cells to apoptotic cells via real time live-cell video imaging. Moreover, the viscosity changes in living cells were proved by fluorescence lifetime imaging (FLIM) studies, flow cytometry using Annexin-V and Bcl-xl expression by immunocytofluorescence (ICC) and western blot analysis.
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Affiliation(s)
- Neha Gupta
- Department of Chemistry, UGC Sponsored Centre for Advanced Studies-1, Guru Nanak Dev University, Amritsar, Punjab, India.
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40
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Dent MR, López-Duarte I, Dickson CJ, Chairatana P, Anderson HL, Gould IR, Wylie D, Vyšniauskas A, Brooks NJ, Kuimova MK. Imaging plasma membrane phase behaviour in live cells using a thiophene-based molecular rotor. Chem Commun (Camb) 2016; 52:13269-13272. [DOI: 10.1039/c6cc05954f] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A thiophene-based molecular rotor was used to probe ordering and viscosity within artificial lipid bilayers and live cell plasma membranes.
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Affiliation(s)
| | - Ismael López-Duarte
- Department of Chemistry
- Imperial College London
- London
- UK
- Department of Chemistry
| | - Callum J. Dickson
- Computer-Aided Drug Discovery
- Global Discovery Chemistry
- Novartis Institutes for BioMedical Research
- Cambridge
- USA
| | - Phoom Chairatana
- Department of Chemistry
- Chemistry Research Laboratory
- Oxford University
- Oxford
- UK
| | - Harry L. Anderson
- Department of Chemistry
- Chemistry Research Laboratory
- Oxford University
- Oxford
- UK
| | - Ian R. Gould
- Department of Chemistry
- Imperial College London
- London
- UK
| | - Douglas Wylie
- Department of Chemistry
- Imperial College London
- London
- UK
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41
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Lee SC, Heo J, Ryu JW, Lee CL, Kim S, Tae JS, Rhee BO, Kim SW, Kwon OP. Pyrrolic molecular rotors acting as viscosity sensors with high fluorescence contrast. Chem Commun (Camb) 2016; 52:13695-13698. [DOI: 10.1039/c6cc06521j] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Pyrrolic viscosity sensors exhibit one order of magnitude higher fluorescence contrast compared to that of the conventional phenolic analogues due to the viscosity-sensitive rotation of the rotational pyrrole group.
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Affiliation(s)
- Seung-Chul Lee
- Department of Molecular Science and Technology
- Ajou University
- Suwon 443-749
- Korea
| | - Jeongyun Heo
- Center for Theragnosis
- Korea Institute of Science and Technology (KIST)
- Seongbuk-gu
- Korea
| | - Jong-Wan Ryu
- Department of Molecular Science and Technology
- Ajou University
- Suwon 443-749
- Korea
| | - Chang-Lyoul Lee
- Advanced Photonics Research Institute (APRI)
- Gwangju Institute of Science and Technology (GIST)
- Buk-gu
- Korea
| | - Sehoon Kim
- Center for Theragnosis
- Korea Institute of Science and Technology (KIST)
- Seongbuk-gu
- Korea
| | - Joon-Sung Tae
- Department of Mechanical Engineering
- Ajou University
- Suwon
- Korea
| | - Byung-Ohk Rhee
- Department of Mechanical Engineering
- Ajou University
- Suwon
- Korea
| | - Sang-Wook Kim
- Department of Molecular Science and Technology
- Ajou University
- Suwon 443-749
- Korea
| | - O-Pil Kwon
- Department of Molecular Science and Technology
- Ajou University
- Suwon 443-749
- Korea
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42
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Hu J, Zhu H, Li Y, Wang X, Ma R, Guo Q, Xia A. Enhanced fluorescence of [[5′-(4-hydroxyphenyl)[2,2′-bithiophen]-5-yl]methylene]-propanedinitrile (NIAD-4): solvation induced micro-viscosity enhancement. Phys Chem Chem Phys 2016; 18:18750-7. [DOI: 10.1039/c6cp00881j] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The solvation induced micro-viscosity enhancement effects on the fluorescence of a novel amyloid fibril marker (NIAD-4) were investigated in different alcoholic and aprotic solvents.
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Affiliation(s)
- Jiangpu Hu
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
| | - Huaning Zhu
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
| | - Yang Li
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
| | - Xian Wang
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
| | - Renjun Ma
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
| | - Qianjin Guo
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
| | - Andong Xia
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- P. R. China
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43
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Zhao M, Zhu Y, Su J, Geng Q, Tian X, Zhang J, Zhou H, Zhang S, Wu J, Tian Y. A water-soluble two-photon fluorescence chemosensor for ratiometric imaging of mitochondrial viscosity in living cells. J Mater Chem B 2016; 4:5907-5912. [DOI: 10.1039/c6tb01240j] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a novel water-soluble ratiometric TPEF chemosensor EIN that is specifically responsive and singularly sensitive to mitochondria viscosity in living cells.
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44
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Maar RR, Barbon SM, Sharma N, Groom H, Luyt LG, Gilroy JB. Evaluation of Anisole-Substituted Boron Difluoride Formazanate Complexes for Fluorescence Cell Imaging. Chemistry 2015; 21:15589-99. [DOI: 10.1002/chem.201502821] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Indexed: 11/09/2022]
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45
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Barbon SM, Staroverov VN, Gilroy JB. Effect of Extended π Conjugation on the Spectroscopic and Electrochemical Properties of Boron Difluoride Formazanate Complexes. J Org Chem 2015; 80:5226-35. [DOI: 10.1021/acs.joc.5b00620] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stephanie M. Barbon
- Department
of Chemistry and
the Centre for Advanced Materials and Biomaterials Research (CAMBR), The University of Western Ontario, 1151 Richmond Street North, London, Ontario, Canada N6A 5B7
| | - Viktor N. Staroverov
- Department
of Chemistry and
the Centre for Advanced Materials and Biomaterials Research (CAMBR), The University of Western Ontario, 1151 Richmond Street North, London, Ontario, Canada N6A 5B7
| | - Joe B. Gilroy
- Department
of Chemistry and
the Centre for Advanced Materials and Biomaterials Research (CAMBR), The University of Western Ontario, 1151 Richmond Street North, London, Ontario, Canada N6A 5B7
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46
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Kimball JD, Raut S, Jameson LP, Smith NW, Gryczynski Z, Dzyuba SV. BODIPY-BODIPY dyad: assessing the potential as a viscometer for molecular and ionic liquids. RSC Adv 2015; 5:19508-19511. [PMID: 25844163 PMCID: PMC4381807 DOI: 10.1039/c4ra09757b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Accepted: 02/10/2015] [Indexed: 12/18/2022] Open
Abstract
A symmetrical BODIPY-BODIPY dyad with a diyne linker was prepared in two steps; the lifetime decay of this rotor appeared to correlate with the viscosity of the media, thus making this dyad a suitable small molecule viscometer for molecular solvents. The potential of using the rotor to probe the viscosity of ionic liquids was also investigated.
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Affiliation(s)
- Joseph D. Kimball
- Department of Physics and Astronomy , Texas Christian University , Fort Worth , TX 76129 , USA . ; Fax: +1 817 257 7742 ; Tel: +1 817 257 4209
| | - Sangram Raut
- Department of Physics and Astronomy , Texas Christian University , Fort Worth , TX 76129 , USA . ; Fax: +1 817 257 7742 ; Tel: +1 817 257 4209
| | - Laramie P. Jameson
- Department of Chemistry , Texas Christian University , Fort Worth , TX 76129 , USA . ; Fax: +1 817 257 5851 ; Tel: +1 817 257 6218
| | - Nicholas W. Smith
- Department of Chemistry , Texas Christian University , Fort Worth , TX 76129 , USA . ; Fax: +1 817 257 5851 ; Tel: +1 817 257 6218
| | - Zygmunt Gryczynski
- Department of Physics and Astronomy , Texas Christian University , Fort Worth , TX 76129 , USA . ; Fax: +1 817 257 7742 ; Tel: +1 817 257 4209
| | - Sergei V. Dzyuba
- Department of Chemistry , Texas Christian University , Fort Worth , TX 76129 , USA . ; Fax: +1 817 257 5851 ; Tel: +1 817 257 6218
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