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Brownsey DK, Gafuik CJ, Kim DS, O'Sullivan L, Gorobets E, Krukowski S, Turk M, Jenne CN, Mahoney DJ, Derksen DJ. Utilising the intrinsic fluorescence of pomalidomide for imaging applications. Chem Commun (Camb) 2023; 59:14532-14535. [PMID: 38019727 DOI: 10.1039/d3cc04314b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2023]
Abstract
Optimisation of protein degraders requires balancing multiple factors including potency, cell permeability and solubility. Here we show that the fluorescence of pomalidomide can be used in high-throughput screening assays to rapidly assess cellular penetration of degrader candidates. In addition, this technique can be paired with endocytosis inhibitors to gain insight into potential mechanisms of candidates entering a target cell. A model library of pomalidomide conjugates was synthesised and evaluated using high-throughput fluorescence microscopy. This technique based on intrinsic fluorescence can be used to guide rational design of pomalidomide conjugates without the need for additional labels or tags.
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Affiliation(s)
- Duncan K Brownsey
- Department of Chemistry, University of Calgary, Calgary, AB, Canada
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
| | - Christopher J Gafuik
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
- Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada
- Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada
| | - Dae-Sun Kim
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
- Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada
- Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada
| | - Leonie O'Sullivan
- Department of Chemistry, University of Calgary, Calgary, AB, Canada
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
| | - Evgueni Gorobets
- Department of Chemistry, University of Calgary, Calgary, AB, Canada
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
| | - Samuel Krukowski
- Department of Chemistry, University of Calgary, Calgary, AB, Canada
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
| | - Madison Turk
- Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada
- Calvin, Phoebe, and Joan Snyder Institute for Chronic Diseases, University of Calgary, Calgary, AB, Canada
| | - Craig N Jenne
- Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada
- Calvin, Phoebe, and Joan Snyder Institute for Chronic Diseases, University of Calgary, Calgary, AB, Canada
| | - Douglas J Mahoney
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
- Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada
- Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada
| | - Darren J Derksen
- Department of Chemistry, University of Calgary, Calgary, AB, Canada
- Alberta Children's Health Research Institute (ACHRI), University of Calgary, Calgary, AB, Canada
- Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada
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Kita Y, Nishida JI, Nishida S, Matsui Y, Ikeda H, Hirao Y, Kawase T. Charge-Transfer and Arrangement Effects on Delayed Photoluminescence from Phthalimide Cocrystals. CHEMPHOTOCHEM 2017. [DOI: 10.1002/cptc.201700112] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Yasuyuki Kita
- Department of Applied Chemistry, Graduate School of Engineerin; University of Hyogo; 2167 Shosha, Himeji Hyogo 671-2280 Japan
| | - Jun-ichi Nishida
- Department of Applied Chemistry, Graduate School of Engineerin; University of Hyogo; 2167 Shosha, Himeji Hyogo 671-2280 Japan
| | - Shota Nishida
- Department of Applied Chemistry, Graduate School of Engineering; Osaka Prefecture University; 1-1 Gakuen-cho, Naka-ku, Sakai Osaka 599-8531 Japan
| | - Yasunori Matsui
- Department of Applied Chemistry, Graduate School of Engineering; Osaka Prefecture University; 1-1 Gakuen-cho, Naka-ku, Sakai Osaka 599-8531 Japan
- The Research Institute for Molecular Electronic Devices (RIMED); Osaka Prefecture University; 1-1 Gakuen-cho, Naka-ku, Sakai Osaka 599-8531 Japan
| | - Hiroshi Ikeda
- Department of Applied Chemistry, Graduate School of Engineering; Osaka Prefecture University; 1-1 Gakuen-cho, Naka-ku, Sakai Osaka 599-8531 Japan
- The Research Institute for Molecular Electronic Devices (RIMED); Osaka Prefecture University; 1-1 Gakuen-cho, Naka-ku, Sakai Osaka 599-8531 Japan
| | - Yasukazu Hirao
- Department of Chemistry, Graduate School of Science; Osaka University, Toyonaka; Osaka 560-0043 Japan
| | - Takeshi Kawase
- Department of Applied Chemistry, Graduate School of Engineerin; University of Hyogo; 2167 Shosha, Himeji Hyogo 671-2280 Japan
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Kawajiri I, Nagahara M, Ishikawa H, Yamamoto Y, Nishida JI, Kitamura C, Kawase T. π-Extended fluoranthene imide derivatives: synthesis, structures, and electronic and optical properties. CAN J CHEM 2017. [DOI: 10.1139/cjc-2016-0488] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Diels–Alder reactions of acenaphthylene-5,6-dicarboximide (AI) derivatives with the corresponding dienes afforded some derivatives of π-extended fluoranthene imide, namely N-(2-ethylhexyl)-7,10-diphenylfluoranthene imide (DPFI) and N-(2-ethylhexyl)-7,8,9,10-tetraphenylfluoranthene imide (TPFI), N-(n-octyl)-benzo[k]fluoranthene imide (BFI), and N-(n-octyl)-naphtho[k]fluoranthene imide (NFI). Molecular structures of TPFI and BFI reveal that the core π-skeletons have a highly planar structure, and the molecules form a dimeric structure in the crystals. The absorption spectra exhibit bathochromic shift with π-extension of the core π-skeletons. On the other hand, DPFI and TPFI show the long-wavelength emission related to BFI, probably due to π-extension toward the phenyl substituents in the excited states. BFI and NFI exhibited an interesting concentration-dependent 1H-NMR behavior in CDCl3, suggesting self-aggregation formation. Moreover, BFI and NFI show moderate and remarkable solvatofluorochromism in solutions (BFI for ΔλEM = 67 nm, NFI for ΔλEM = 116 nm), respectively, while DPFI and TPFI show weak solvatofluorochromism. The density functional theory calculations demonstrate that the considerable spatial separation between the HOMO and LUMO coefficients in the NFI molecule. The result indicates that the ground-to-excited state transition of NFI should have intramolecular charge transfer (ICT) character.
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Affiliation(s)
- Ikumi Kawajiri
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan
| | - Masaya Nagahara
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan
| | - Hiroyuki Ishikawa
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan
| | - Yuma Yamamoto
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan
| | - Jun-ichi Nishida
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan
| | - Chitoshi Kitamura
- School of Engineering, The University of Shiga Prefecture, 2500, Hassaka-cho, Hikone, Shiga 522-8533, Japan
| | - Takeshi Kawase
- Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan
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