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Betts PC, Blakely SJ, Rutkowski BN, Bender B, Klingler C, Froese JT. Engineering of Rieske dioxygenase variants with improved cis-dihydroxylation activity for benzoates. Biotechnol Bioeng 2024; 121:3144-3154. [PMID: 38951963 DOI: 10.1002/bit.28786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 06/13/2024] [Accepted: 06/16/2024] [Indexed: 07/03/2024]
Abstract
Rieske dioxygenases have a long history of being utilized as green chemical tools in the organic synthesis of high-value compounds, due to their capacity to perform the cis-dihydroxylation of a wide variety of aromatic substrates. The practical utility of these enzymes has been hampered however by steric and electronic constraints on their substrate scopes, resulting in limited reactivity with certain substrate classes. Herein, we report the engineering of a widely used member of the Rieske dioxygenase class of enzymes, toluene dioxygenase (TDO), to produce improved variants with greatly increased activity for the cis-dihydroxylation of benzoates. Through rational mutagenesis and screening, TDO variants with substantially improved activity over the wild-type enzyme were identified. Homology modeling, docking studies, molecular dynamics simulations, and substrate tunnel analysis were applied in an effort to elucidate how the identified mutations resulted in improved activity for this polar substrate class. These analyses revealed modification of the substrate tunnel as the likely cause of the improved activity observed with the best-performing enzyme variants.
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Affiliation(s)
- Phillip C Betts
- Department of Chemistry, Ball State University, Muncie, Indiana, USA
| | - Spencer J Blakely
- Department of Chemistry, Ball State University, Muncie, Indiana, USA
| | | | - Brandon Bender
- Department of Chemistry, Ball State University, Muncie, Indiana, USA
| | - Cole Klingler
- Department of Chemistry, Ball State University, Muncie, Indiana, USA
| | - Jordan T Froese
- Department of Chemistry, Ball State University, Muncie, Indiana, USA
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2
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Stout CN, Wasfy NM, Chen F, Renata H. Charting the Evolution of Chemoenzymatic Strategies in the Syntheses of Complex Natural Products. J Am Chem Soc 2023; 145:18161-18181. [PMID: 37553092 PMCID: PMC11107883 DOI: 10.1021/jacs.3c03422] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
Bolstered by recent advances in bioinformatics, genetics, and enzyme engineering, the field of chemoenzymatic synthesis has enjoyed a rapid increase in popularity and utility. This Perspective explores the integration of enzymes into multistep chemical syntheses, highlighting the unique potential of biocatalytic transformations to streamline the synthesis of complex natural products. In particular, we identify four primary conceptual approaches to chemoenzymatic synthesis and illustrate each with a number of landmark case studies. Future opportunities and challenges are also discussed.
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Affiliation(s)
- Carter N. Stout
- Skaggs Doctoral Program in the Chemical and Biological Sciences, Scripps Research, La Jolla, CA 92037, USA
| | - Nour M. Wasfy
- Department of Chemistry, BioScience Research Collaborative, Rice University, Houston, Texas, 77005, United States
| | - Fang Chen
- Department of Chemistry, BioScience Research Collaborative, Rice University, Houston, Texas, 77005, United States
| | - Hans Renata
- Department of Chemistry, BioScience Research Collaborative, Rice University, Houston, Texas, 77005, United States
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3
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Habaz L, Bedard K, Smith M, Du L, Kornienko A, Hudlicky T. Design and Synthesis of C-1 Methoxycarbonyl Derivative of Narciclasine and Its Biological Activity. Molecules 2022; 27:3809. [PMID: 35744934 PMCID: PMC9230822 DOI: 10.3390/molecules27123809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 06/08/2022] [Accepted: 06/09/2022] [Indexed: 02/04/2023] Open
Abstract
A 15-step chemoenzymatic total synthesis of C-1 methoxycarbonyl narciclasine (10) was accomplished. The synthesis began with the toluene dioxygenase-mediated dihydroxylation of ortho-dibromobenzene to provide the corresponding cis-dihydrodiol (12) as a single enantiomer. Further key steps included a nitroso Diels-Alder reaction and an intramolecular Heck cyclization. The C-1 homolog 10 was tested and evaluated for antiproliferative activity against natural narciclasine (1) as the positive control. Experimental and spectral data are reported for all novel compounds.
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Affiliation(s)
- Lihi Habaz
- Department of Chemistry, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, ON L2S 3A1, Canada;
| | - Korey Bedard
- Department of Chemistry, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, ON L2S 3A1, Canada;
| | - Mitchell Smith
- Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX 78666, USA; (M.S.); (L.D.)
| | - Liqin Du
- Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX 78666, USA; (M.S.); (L.D.)
| | - Alexander Kornienko
- Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX 78666, USA; (M.S.); (L.D.)
| | - Tomas Hudlicky
- Department of Chemistry, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, ON L2S 3A1, Canada;
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Peixoto de Abreu Lima A, Suescun L, Pandolfi E, Schapiro V. The first enantioselective strategy towards speciosins. NEW J CHEM 2019. [DOI: 10.1039/c8nj06158k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We introduce chirality with a biotransformation and a side chain with a Sonogashira reaction, for the first enantioselective strategy for speciosins.
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Affiliation(s)
| | - Leopoldo Suescun
- Cryssmat-Lab/Cátedra de Física/DETEMA
- Facultad de Química
- Universidad de la República
- Montevideo
- Uruguay
| | - Enrique Pandolfi
- Laboratorio de Síntesis Orgánica
- Departamento de Química Orgánica
- Facultad de Química
- Universidad de la República
- Montevideo
| | - Valeria Schapiro
- Laboratorio de Síntesis Orgánica
- Departamento de Química Orgánica
- Facultad de Química
- Universidad de la República
- Montevideo
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5
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Dlugosch M, Ma X, Yang S, Banwell MG, Ma C, Ward JS, Carr P. Syntheses of Structurally and Stereochemically Varied Forms of C7N Aminocyclitol Derivatives from Enzymatically Derived and Homochiral cis-1,2-Dihydrocatechols. Org Lett 2018; 20:7225-7228. [DOI: 10.1021/acs.orglett.8b03149] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Michael Dlugosch
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
| | - Xinghua Ma
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
| | - Shuxin Yang
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
| | - Martin G. Banwell
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
| | - Chenxi Ma
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
| | - Jas S. Ward
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
| | - Paul Carr
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia
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Baidilov D, Rycek L, Trant JF, Froese J, Murphy B, Hudlicky T. Chemoenzymatic Synthesis of Advanced Intermediates for Formal Total Syntheses of Tetrodotoxin. Angew Chem Int Ed Engl 2018; 57:10994-10998. [DOI: 10.1002/anie.201804602] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Daler Baidilov
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Lukas Rycek
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - John F. Trant
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Jordan Froese
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Brennan Murphy
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Tomas Hudlicky
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
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7
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Baidilov D, Rycek L, Trant JF, Froese J, Murphy B, Hudlicky T. Chemoenzymatic Synthesis of Advanced Intermediates for Formal Total Syntheses of Tetrodotoxin. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804602] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Daler Baidilov
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Lukas Rycek
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - John F. Trant
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Jordan Froese
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Brennan Murphy
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
| | - Tomas Hudlicky
- Department of Chemistry and Centre for Biotechnology; Brock University; 1812 Sir Isaac Brock Way St. Catahrines ON L2S 3A1 Canada
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8
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Diels–Alder reaction of two green chiral precursors. Approach to natural product like structures. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.09.031] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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