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Jayabal K, Elumalai D, Leelakrishnan S, Bhattacharya S, Rengarajan V, Kannan T, Chuang SC. Green and Regioselective Approach for the Synthesis of 3-Substituted Indole Based 1,2-Dihydropyridine and Azaxanthone Derivatives as a Potential Lead for SARS-CoV-2 and Delta Plus Mutant Virus: DFT and Docking Studies. ACS OMEGA 2022; 7:43856-43876. [PMID: 36506171 PMCID: PMC9730777 DOI: 10.1021/acsomega.2c04990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 10/12/2022] [Indexed: 06/17/2023]
Abstract
Great attempts have been done for the development of novel antiviral compounds against SAR-CoV-2 to end this pandemic situation and save human society. Herewith, we have synthesized 3-substituted indole/2-substituted pyrrole 1,2-dihydropyridine and azaxanthone scaffolds using simple, commercially available starting materials in a one-pot, green, and regioselective manner. Further, the regioselectivity of product formation was confirmed by various studies such as controlled experiments, density functional theory (DFT), Mulliken atomic charge, and electrostatic potential (ESP) surface. In addition, 3-substituted indole 1,2-dihydropyridine was successfully converted into a biologically enriched pharmacophore scaffold, viz., indolylimidazopyridinylbenzofuran scaffold, in excellent yield. Moreover, the synthesized 3-substituted indole 1,2-dihydropyridine/2-substituted pyrroles were analyzed in docking studies for anti-SARS-CoV-2 properties against their main protease (Mpro) and anti-Delta plus properties against their protein of the Delta plus K417N mutant. Further, the drug-likeness prediction was analyzed by the Lipinski rule and other pharmacokinetic properties like absorption, distribution, metabolism, excretion, and toxicity using preADMET prediction. Interestingly, the docking results show that out of 20 synthesized compounds, 5 of them for Mpro of SAR-CoV-2 and 9 of them for 7NX7 spike glycoprotein's A chain of Delta plus K417N show greater binding affinity when compared with remdesivir that is the first to receive FDA approval and is currently used as a potent drug for the treatment of COVID-19. These results suggest that indole/pyrrole substituted 1,2-dihydropyridine derivatives are capable of combating SARS-CoV-2 and its Delta plus mutant.
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Affiliation(s)
- Kamalraja Jayabal
- Department
of Chemistry, Pondicherry University, Puducherry 605014, India
- Department
of Applied Chemistry, National Yang Ming
Chiao Tung University, Hsinchu 30010, Taiwan R.O.C
| | | | - Saraswathi Leelakrishnan
- Department
of Chemistry, Pondicherry University, Puducherry 605014, India
- Department
of Chemistry, Nirmala College for Women, Coimbatore 641018, India
| | - Suman Bhattacharya
- Department
of Physics, University of Limerick, Castletroy, Limerick V94
T9PX , Republic of Ireland
| | | | | | - Shih-Ching Chuang
- Department
of Applied Chemistry, National Yang Ming
Chiao Tung University, Hsinchu 30010, Taiwan R.O.C
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Dhanasekar E, Kannan T, Venkatesan R, Perumal PT, Kamalraja J. Metal-Free and Regioselective Synthesis of Substituted and Fused Chromenopyrrole Scaffolds via the Divergent Reactivity of α-Azido Ketones in Water. J Org Chem 2020; 85:9631-9649. [PMID: 32628472 DOI: 10.1021/acs.joc.0c00978] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A green and simple approach was developed for the regioselective synthesis of structurally diverse chromenopyrrole frameworks from 3-formylchromones, active methylenes, and α-azido ketones using piperidine as a catalyst in the aqueous medium through a tandem one-pot multicomponent reaction. Further, the synthesized pyrrole framework was successfully converted into biologically significant 6-azaindole derivatives in a simple synthetic transformation. An exciting feature of this synthetic protocol is that the reaction mechanism and formation of the products depend on the nature of the active methylene used. This approach has several advantages such as a transition-metal-free catalyst, a short reaction time, easy separation, an excellent yield, practically simple execution, high regioselectivity, very good atom economy, low E-factor, and no requirement of toxic solvents and chromatographic purification.
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Affiliation(s)
- Elumalai Dhanasekar
- Department of Chemistry, Pondicherry University, R.V. Nagar, Kalapet, Puducherry 605014, India
| | - Tharanikkarasu Kannan
- Department of Chemistry, Pondicherry University, R.V. Nagar, Kalapet, Puducherry 605014, India
| | - Rengarajan Venkatesan
- Department of Chemistry, Pondicherry University, R.V. Nagar, Kalapet, Puducherry 605014, India
| | | | - Jayabal Kamalraja
- Department of Chemistry, Pondicherry University, R.V. Nagar, Kalapet, Puducherry 605014, India
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Wang DC, Fan C, Xie YM, Yao S, Song H. Efficient and mild one-pot synthesis of (E)-8′-arylidene-5′,6′,7′,8′-tetrahydrospiro[oxindole-3,4′-pyrano[3,2-c]pyridin] derivatives with potential antitumor activity. ARAB J CHEM 2019. [DOI: 10.1016/j.arabjc.2014.12.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Naghiyev F, Mamedov I, Khrustalev V, Shixaliyev N, Maharramov A. A new direction in the alkylation of 5-acetyl-2-amino-6-methyl-4-phenyl-4H
-pyran-3-carbonitrile with active methylene reagents. J CHIN CHEM SOC-TAIP 2018. [DOI: 10.1002/jccs.201800283] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Farid Naghiyev
- Baku State University; Faculty of Chemistry; Baku Azerbaijan
| | - Ibrahim Mamedov
- Baku State University; Faculty of Chemistry; Baku Azerbaijan
| | - Victor Khrustalev
- People Friendship University of Russia (RUDN), Research Institute of Chemistry; Moscow Russia
| | | | - Abel Maharramov
- Baku State University; Faculty of Chemistry; Baku Azerbaijan
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Elumalai D, Gnanasekaran R, Leelakrishnan S, Nachimuthu G, Kannan T, Paramasivam TP, Jayabal K. InCl3-Assisted Eco-Friendly Approach for N-Fused 1,4-Dihydropyridine Scaffolds via Ring Opening Michael Addition of Cyclic Nitroketene and Iminocoumarin: Synthesis and DFT Studies. ChemistrySelect 2018. [DOI: 10.1002/slct.201702718] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
| | | | | | | | | | | | - Kamalraja Jayabal
- Department of Chemistry; Pondicherry University; Puducherry - 605014 India
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Hojati SF, Amiri AH, Raouf H. Efficient four-component synthesis of spiroindole derivatives catalysed by a versatile and reusable nano-paramagnetic catalyst. Appl Organomet Chem 2016. [DOI: 10.1002/aoc.3595] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Amir Hassan Amiri
- Department of Chemistry; Hakim Sabzevari University; Sabzevar 96179 -76487 Iran
| | - Hamideh Raouf
- Department of Chemistry; Hakim Sabzevari University; Sabzevar 96179 -76487 Iran
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AaminaNaaz Y, Kamalraja J, Vimala G, Perumal PT, SubbiahPandi A. Crystal structure of 1'-(prop-2-yn-1-yl)-1,4-di-hydro-spiro-[benzo[d][1,3]oxazine-2,3'-indolin]-2'-one. ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS 2015; 71:o510-1. [PMID: 26279936 PMCID: PMC4518956 DOI: 10.1107/s2056989015011949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Accepted: 06/22/2015] [Indexed: 11/11/2022]
Abstract
In the title compound, C18H14N2O2, the six-membered oxazine ring adopts a half-chair conformation and its mean plane makes a dihedral angle of 83.23 (7)° with the pyrrolidine ring of the indoline ring system. In the crystal, molecules are linked via N—H⋯O hydrogen bonds, forming chains along [100]. The chains are linked by C—H⋯π interactions, forming slabs parallel to (001).
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Affiliation(s)
- Y AaminaNaaz
- Department of Physics, Presidency College (Autonomous), Chennai 600 005, India
| | - J Kamalraja
- Organic Chemistry Division, Central Leather Research Institute, Adyar, Chennai 602 020, India
| | - G Vimala
- Department of Physics, Presidency College (Autonomous), Chennai 600 005, India
| | - P T Perumal
- Organic Chemistry Division, Central Leather Research Institute, Adyar, Chennai 602 020, India
| | - A SubbiahPandi
- Department of Physics, Presidency College (Autonomous), Chennai 600 005, India
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Jung Y, Kim I. C3 functionalization of indolizines via In(iii)-catalyzed three-component reaction. Org Biomol Chem 2015; 13:10986-94. [DOI: 10.1039/c5ob01657f] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Post-functionalization at the C3 position of indolizines via In(iii)-catalyzed three-component coupling reaction with amines and aldehydes allowed rapid access to a new class of indolizines with diverse functional groups at the C3 position in good to excellent yields.
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Affiliation(s)
- Youngeun Jung
- College of Pharmacy and Yonsei Institute of Pharmaceutical Sciences
- Yonsei University
- Incheon 406-840
- Republic of Korea
| | - Ikyon Kim
- College of Pharmacy and Yonsei Institute of Pharmaceutical Sciences
- Yonsei University
- Incheon 406-840
- Republic of Korea
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Wang D, Zhao K, Yu X, Miao H, Ding Y. Iridium–CNP complex catalyzed cross-coupling of primary alcohols and secondary alcohols by a borrowing hydrogen strategy. RSC Adv 2014. [DOI: 10.1039/c4ra06474g] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Li L, Hu Q, Zhou P, Xie H, Zhang X, Zhang H, Hu Y, Yin F, Hu Y. One-step synthesis of diazaspiro[4.5]decane scaffolds with exocyclic double bonds. Org Biomol Chem 2014; 12:5356-9. [PMID: 24956492 DOI: 10.1039/c4ob00516c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Unactivated yne-en-ynes reacted with a range of substituted aryl halides in the presence of Pd(OAc)2-PPh3 to afford diazaspiro[4.5]decane with exocyclic double bonds. Three carbon-carbon bonds are formed in this domino reaction, which involves highly regioselective C-C coupling and spiro scaffold steps.
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Affiliation(s)
- Lidong Li
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
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