Stretching and folding of 2-nanometer hydrocarbon rods

Weak hydrogen bonding to halogens and chirality communication in propanols: Raman and microwave spectroscopy benchmark theory

Constitutional and conformational isomers of bromopropanol are vibrationally and rotationally characterised with parallels drawn to the structural chlorine analogues. A previous microwave spectroscopic study of the chloropropanols is re-examined and all systems are explored by Raman jet spectroscopy. For bromine, the entire nuclear quadrupole coupling tensors are accurately determined and compared to their chlorine counterparts. Tensor asymmetry parameters are determined and linked with the hydrogen bond strength as indicated by the downshift of the OH-stretching frequency. The spectroscopic constants derived from the observed transitions are used as benchmarks for a large variety of electronic structure methods followed by harmonic and anharmonic rovibrational treatments. The CCSD(T) electronic structure calculations provide the best performance, in particular once anharmonic and relativistic corrections are applied or implied. Standard DFT approaches vary substantially with respect to their systematic error cancellation across the investigated species, and cost-effective compromises for the different observables are proposed.

CC-stretched formic acid: isomerisation, dimerisation, and carboxylic acid complexation

The cis-trans-isomerism of the propiolic acid monomer (HC[triple bond, length as m-dash]C-COOH) is examined with linear Raman jet spectroscopy, yielding the first environment-free vibrational band centres of a higher-energy cis-rotamer beyond formic acid (HCOOH) in addition to all fundamentals and a large number of hot and combination/overtone bands of the trans-conformer. Two near-isoenergetic trans-fundamentals of different symmetry (CC[double bond, length as m-dash]O bend and OH torsion) prove to be a sensitive benchmarking target, as their energetic order is susceptible to the choice of electronic structure method, basis set size, and inclusion of vibrational anharmonicity. For the infrared- and Raman-active C[double bond, length as m-dash]O stretching fundamentals of the cyclic (C_2h) trans-propiolic acid dimer, resonance couplings are found that in part extend to the C_s-symmetric heterodimer of trans-propiolic and trans-formic acid. Exploratory vibrational perturbation theory (VPT2) calculations show that all perturbing states involve displacements of the OH moieties located on the doubly hydrogen bonded ring. The comparison of the infrared spectra of the propiolic acid dimer and its heterodimer with formic acid to that of several other carboxylic acid dimers from the literature reveals a notable similarity regarding a non-fundamental dimer band around 1800 cm^-1, which in most cases is so far unassigned. VPT2 calculations and a simple harmonic model suggest an assignment to a combination vibration of the symmetric and antisymmetric OH torsion.

Quantifying Conformational Isomerism in Chain Molecules by Linear Raman Spectroscopy: The Case of Methyl Esters

The conformational preferences of the ester group have the potential to facilitate the large amplitude folding of long alkyl chains in the gas phase. They are monitored by Raman spectroscopy in supersonic jet expansions for the model system methyl butanoate, after establishing a quantitative relationship with quantum-chemical predictions for methyl methanoate. This requires a careful analysis of experimental details, and a simulation of the rovibrational contours for near-symmetric top molecules. The technique is shown to be complementary to microwave spectroscopy in quantifying coexisting conformations. It confirms that a C-O-C(=O)-C-C chain segment can be collapsed into a single all-trans conformation by collisional cooling, whereas alkyl chain isomerism beyond this five-membered chain largely survives the jet expansion. This sets the stage for the investigation of linear alkyl alkanoates in terms of dispersion-induced stretched-chain to hairpin transitions by Raman spectroscopy.

Molecular-Scale Understanding of the Embrittlement in Polyethylene Ocean Debris

The fate of plastic waste is a pressing issue since it forms a visible and long-lived reminder of the environmental impact of consumer habits. In this study, we examine the structural changes in the lamellar arrangements of semicrystalline polyethylene (PE) packaging waste with the aim of understanding the physical mechanisms of embrittlement in PE exposed to the marine environment. PE microplastics and macroplastics from identifiable PE packaging were collected in the Atlantic Ocean and compared to new PE boxes. Several experimental techniques interrogate the effects of environmental exposure on their bulk and surface properties. Size exclusion chromatography determines the molecular weight distribution of the PE polymer chains and differential scanning calorimetry gives the crystallinity. Small- and wide-angle X-ray scattering examines the packing of PE chains into semicrystalline lamellae. Longitudinal acoustic mode Raman spectroscopy provides a complementary measurement of the length of PE polymer chains extending through the crystalline lamellar domains. While there is a high degree of uncertainty in the time scale for the changes, the overall picture at the molecular scale is that although PE becomes more crystalline with environmental exposure, the lamellar order present in new packing boxes is disrupted by the weathering process. This process has important implications for embrittlement and subsequent degradation.

2-Methoxyethanol: harmonic tricks, anharmonic challenges and chirality-sensitive chain aggregation

The Raman spectrum of jet-cooled, nearly monoconformational 2-methoxyethanol reveals a strong, aggregation-sensitive resonance in the backbone stretching region and pronounced chirality-dependent dimerisation effects in the OH stretching region. These effects are disentangled by a dual-detection scheme which simultaneously probes the two spectral regions. The performance of mass-scaled harmonic wavenumber predictions and of vibrational perturbation theory in reproducing these spectral features is explored.

The reduced cohesion of homoconfigurational 1,2-diols

Homochiral encounters of vicinal diols are blocked from relaxing to the heterochiral global minimum dimer structure in supersonic jet expansions.

Stretching of cis-formic acid: warm-up and cool-down as molecular work-out

A new technique to rotationally simplify and Raman-probe conformationally and vibrationally excited small molecules is applied to the cis-trans isomerism of formic acid. It quintuples the previously available gas phase vibrational data base on this excited form of a strongly anharmonic planar molecule despite its limited spectral resolution. The newly determined cis-formic acid fundamentals allow for a balanced vibrational benchmark on both rotamers of formic acid. Assuming the adequacy of vibrational perturbation theory, it reveals weaknesses of standard methods for these systems like B3LYP-D3(BJ)/aVQZ VPT2 or PBE0-D3(BJ)/aVQZ VPT2. The functionals ωB97-XD and M06-2X additionally suffer from severe integration grid size and symmetry dependencies. The vibrational benchmark suggests B2PLYP-D3(BJ)/aVQZ VPT2 and MP2/aVQZ VPT2 as partially competitive and in any case efficient alternatives to computationally demanding coupled cluster vibrational configuration interaction calculations. Whether this is due to fortuitous compensation between electronic structure and vibrational perturbation error remains to be explored.

Folded alkane chains and the emergence of the lamellar crystal

The competition between chain stiffness and chain collapse gives rise to complex low temperature morphologies of single polymer chains, in our case alkanes. These structures are characterized by specific sequences of dihedral angles along the chain, i.e., dihedral angle correlations extending beyond local steric effects. To describe and classify these morphologies, one can transfer concepts from protein science, where this creation of dihedral angle correlations underlies the formation of α-helices and β-sheets. We show here by means of flat-histogram Monte Carlo simulations that, although lacking in primary structure being simple homopolymers, short alkane chains fold into non-trivial ground states (tertiary structure) consisting of chain segments of defined secondary structures. The folded lamellar crystal typical for polyethylene chains requires a minimum chain length to occur as the ground state folded structure, which we identify to be around 150 repeat units.

Strained hydrogen bonding in imidazole trimer: a combined infrared, Raman, and theory study

This is not how three imidazole molecules prefer to arrange, as a combined IR, Raman and computational analysis unambiguously shows.

The axial/equatorial conformational landscape and intramolecular dispersion: new insights from the rotational spectra of monoterpenoids

Using rotational spectroscopy and quantum chemistry calculations, we show that intramolecular dispersion stabilises the axial conformers of monoterpenoids, and that an accurate account of these interactions is challenging for theoretical methods.

Tipping the Scales: Spectroscopic Tools for Intermolecular Energy Balances

Intermolecular energy balances are supramolecular complexes with a nearly degenerate bistable docking structure and low barriers in between, which can be tuned by chemical substitution to prefer one or the other site. The docking preference can be probed by forming the complexes in a supersonic jet expansion and by measuring their spectroscopic signature. Linear spectroscopies are shown to be well suited for this purpose, in particular when they are assisted by more sensitive techniques and by approximate computed photon interaction cross sections. Molecular analogues of conventional beam balances, seesaw balances, and torsional balances are discussed, all based on noncovalent interactions. The discrimination of energy differences down to the sub-kJ/mol level is demonstrated. The correspondence to intramolecular torsional balances in NMR spectroscopy is outlined. Besides highlighting conformational preferences, the results of intermolecular balance experiments can serve as critical benchmarks for an accurate description of intermolecular forces and zero-point vibrational energies.

Benchmarking Quantum Chemical Methods: Are We Heading in the Right Direction?

Theoreticians and experimentalists should work together more closely to establish reliable rankings and benchmarks for quantum chemical methods. Comparison to carefully designed experimental benchmark data should be a priority. Guidelines to improve the situation for experiments and calculations are proposed.

Self-Assembly of Amphiphilic Biotransesterified β-Cyclodextrins: Supramolecular Structure of Nanoparticles and Surface Properties

A series of β-cyclodextrin (βCD) amphiphilic derivatives with varying degrees of substitution were prepared by acylating βCDs on their secondary face using thermolysin to catalyze the transesterification. After dissolution in acetone, the βCD-C_n derivatives (n = 8, 10, 12, 14) were nanoprecipitated in water, where they self-organized into structured particles that were characterized using cryo-transmission electron microscopy (cryo-TEM) images and small-angle X-ray scattering (SAXS) data. Two types of morphologies and ultrastructures were observed depending on the total degree of substitution (TDS) of the parent derivative. The molecules with TDS < 5 formed nanospheres with a multilamellar organization, whereas those with TDS > 5 self-assembled into barrel-like (n = 8, 10, 12) or more tortuous (n = 14) particles with a columnar inverse hexagonal structure. In particular, faceted βCD-C₁₄ particles (TDS = 7) appeared to be composed of several domains with different orientations that were separated by sharp interfaces. Ultrastructural models were proposed on the basis of cryo-TEM images and the analysis of the contrast distribution in different projections of the lattice. Complementary compression isotherm experiments carried out at the air-water interface also suggested that differences in the molecular conformation of the series of derivatives existed depending on whether TDS was lower or higher than 5.

Identifying the first folded alkylbenzene via ultraviolet, infrared, and Raman spectroscopy of pentylbenzene through decylbenzene

The shortest possible single-chain alkylbenzene to exist in a folded conformation is determined using spectroscopic and theoretical techniques.

The conformational preferences of pentyl- through decylbenzene are studied under jet-cooled conditions in the gas phase. Laser-induced fluorescence excitation spectra, fluorescence-dip infrared spectra in the alkyl CH stretch region, and Raman spectra are combined to provide assignments for the observed conformers. Density functional theory calculations at the B3LYP-D3BJ/def2TZVP level of theory provide relative energies and normal mode vibrations that serve as inputs for an anharmonic local mode theory introduced in earlier work on alkylbenzenes with n = 2–4. This model explicitly includes anharmonic mixing of the CH stretch modes with the overtones of scissors/bend modes of the CH₂ and CH₃ groups in the alkyl chain, and is used to assign and interpret the single-conformation IR spectra. In octylbenzene, a pair of LIF transitions shifted –92 and –78 cm^–1 from the all-trans electronic origin have unique alkyl CH stretch transitions that are fit by the local model to a g1g3g4 conformation in which the alkyl chain folds back over the aromatic ring π cloud. Its calculated energy is only 1.0 kJ mol^–1 above the all-trans global minimum. This fold is at an alkyl chain length less than half that of the pure alkanes (n = 18), consistent with a smaller energy cost for the g1 dihedral and the increased dispersive interaction of the chain with the π cloud. Local site frequencies for the entire set of conformers from the local mode model show ‘edge effects’ that raise the site frequencies of CH₂(1) and CH₂(2) due to the phenyl ring and CH₂(n – 1) due to the methyl group. The g1g3g4 conformer also shows local sites shifted up in frequency at CH₂(3) and CH₂(6) due to interaction with the π cloud.

To π or not to π – how does methanol dock onto anisole?

Supersonic jet spectroscopy reveals that methanol opts against aromatic docking onto anisole despite a very close competition.

Bracketing subtle conformational energy differences between self-solvated and stretched trifluoropropanol

The interconversion landscape between stretched and folded trifluoropropanol conformations is characterized by Raman jet spectroscopy and theory.

The elastic modulus of isolated polytetrafluoroethylene filaments

We report vibrational Raman spectra of small extended perfluoro-n-alkanes (C{n}F{2n+2} with n=6, 8-10, 12-14) isolated in supersonic jet expansions and use wavenumbers of longitudinal acoustic vibrations to extrapolate the elastic modulus of cold, isolated polytetrafluoroethylene filaments. The derived value E = 209(10) GPa defines an upper limit for the elastic modulus of the perfectly crystalline, non-interacting polymer at low temperatures and serves as a benchmark for quantum chemical predictions.

The elastic modulus of isolated polytetrafluoroethylene filaments

We report vibrational Raman spectra of small extended perfluoro-n-alkanes (C{n}F{2n+2} with n=6, 8-10, 12-14) isolated in supersonic jet expansions and use wavenumbers of longitudinal acoustic vibrations to extrapolate the elastic modulus of cold, isolated polytetrafluoroethylene filaments. The derived value E = 209(10) GPa defines an upper limit for the elastic modulus of the perfectly crystalline, non-interacting polymer at low temperatures and serves as a benchmark for quantum chemical predictions.