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Gao C, Sun Y, Miao Z, Chen S, Xi Z, Sun Q, Han J, Guo R. Chiral Supramolecular Self-Assembly Catalysts with Enhanced Metal Ion Interaction for Higher Enantioselectivity. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:14555-14560. [PMID: 38940619 DOI: 10.1021/acs.langmuir.4c01415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
Understanding the interaction between metal ions as catalytic centers and supramolecular scaffolds as chiral substrates plays an important role in developing chiral supramolecular catalysts with high enantioselectivity. Herein, we found that compared with l-norleucine chiral amphiphile (l-NorC16), l-methionine chiral amphiphile (l-MetC16) with the only heteroatom of S site difference in the hydrophilic group can form a similar supramolecular chiral nanoribbon (NR) with the bilayer structure through the self-assembly approach; yet, the interaction between the Cu(II) ion catalytic centers and supramolecular scaffolds is reinforced, favoring the chirality transfer and therefore enhancing their catalytic enantioselectivity of Diels-Alder reaction from 23% [l-NorC16-NR-Cu(II)] to 78% [l-MetC16-NR-Cu(II)]. Our work demonstrates a new strategy from the perspective of strengthening the metal ion-supramolecular scaffold interaction for the preparation of chiral supramolecular catalysts with good catalytic enantioselectivity.
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Affiliation(s)
- Cong Gao
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
- Henan Institute of Chemistry, Henan Academy of Sciences, Zhengzhou, Henan 450003, China
| | - Yemeng Sun
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
| | - Zhengjie Miao
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
| | - Shipeng Chen
- Henan Institute of Chemistry, Henan Academy of Sciences, Zhengzhou, Henan 450003, China
- Ningbo Key Laboratory of Green Petrochemical Carbon Emission Reduction Technology and Equipment, Zhejiang Institute of Tianjin University, Ningbo, Zhejiang 315201, China
| | - Zheng Xi
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
| | - Qingqing Sun
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
| | - Jie Han
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
| | - Rong Guo
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou, Jiangsu 225002, China
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2
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Dey K, Koner K, Mukhopadhyay RD, Shetty D, Banerjee R. Porous Organic Nanotubes: Chemistry of One-Dimensional Space. Acc Chem Res 2024; 57:1839-1850. [PMID: 38886130 DOI: 10.1021/acs.accounts.4c00224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/20/2024]
Abstract
ConspectusOne-dimensional organic nanotubes feature unique properties, such as confined chemical environments and transport channels, which are highly desirable for many applications. Advances in synthetic methods have enabled the creation of different types of organic nanotubes, including supramolecular, hydrogen-bonded, and carbon nanotube analogues. However, challenges associated with chemical and mechanical stability along with difficulties in controlling aspect ratios remain a significant bottleneck. The fascination with structured porous materials has paved the way for the emergence of reticular solids such as metal-organic frameworks (MOFs), covalent organic frameworks (COFs), and organic cages. Reticular materials with tubular morphology promise architectural stability with the additional benefit of permeant porosity. Despite this, the current synthetic approaches to these reticular nanotubes focus more on structural design resulting in less reliable morphological uniformity. This Account, highlights the design motivation behind various classes of organic nanotubes, emphasizing their porous interior space. We explore the strategic assembly of organic nanotubes based on their bonding characteristics, from weak supramolecular to robust covalent interactions. Special attention is given to reticular nanotubes, which have gained prominence over the past two decades due to their distinctive micro and mesoporous structures. We examine the synergy of covalent and noncovalent interactions in constructing assembly of these nanotube structures.This Account furnishes a comprehensive overview of our efforts and advancements in developing porous covalent organic nanotubes (CONTs). We describe a general synthetic approach for creating robust imine-linked nanotubes based on the reticular chemistry principles. The use of spatially oriented tetratopic triptycene-based amine and linear ditopic aldehyde building blocks facilitates one-dimensional nanotube growth. The interplay between directional covalent bonds and solvophobic interactions is crucial for forming uniform, well-defined, and high aspect ratio nanotubes. The nanotubes derive their permeant porosity and thermal and chemical stability from their covalent architecture. We also highlight the adaptability of our synthetic methodology to guide the transformation of one-dimensional nanotubes to toroidal superstructures and two-dimensional thin fabrics. Such morphological transformation can be directed by tuning the reaction time or incorporating additional intermolecular interactions to control the intertwining behavior of individual nanotubes. The cohesion of covalent and noncovalent interactions in the tubular nanostructures manifests superior viscoelastic mechanical properties in the assembled CONT fabrics. We establish a strong correlation between structural framework design and nanostructures by translating reticular synthesis to morphological space and gaining insights into the assembly processes. We anticipate that the present Account will lay the foundation for exploring new designs and chemistry of organic nanotubes for many application platforms.
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Affiliation(s)
- Kaushik Dey
- Department of Chemical Sciences, Centre for Advanced Functional Materials, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Campus, Mohanpur 741246, India
| | - Kalipada Koner
- Department of Chemical Sciences, Centre for Advanced Functional Materials, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Campus, Mohanpur 741246, India
| | - Rahul Dev Mukhopadhyay
- Department of Chemistry, Faculty of Engineering & Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur 603203, Tamil Nadu India
| | - Dinesh Shetty
- Department of Chemistry, Khalifa University Science and Technology, Abu Dhabi, 127788 United Arab Emirates
- Center for Catalysis & Separations (CeCaS), Khalifa University Science and Technology, Abu Dhabi, 127788 United Arab Emirates
| | - Rahul Banerjee
- Department of Chemical Sciences, Centre for Advanced Functional Materials, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Campus, Mohanpur 741246, India
- College of Science, Korea University, 145 Anam-ro Seongbuk-gu, Seoul 02841, Korea
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3
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Abstract
As an active branch within the field of supramolecular polymers, chiral supramolecular polymers (SPs) are an excellent benchmark to generate helical structures that can clarify the origin of homochirality in Nature or help determine new exciting functionalities of organic materials. Herein, we highlight the most utilized strategies to build up chiral SPs by using chiral monomeric units or external stimuli. Selected examples of transfer of asymmetry, in which the point or axial chirality contained by the monomeric units is efficiently transferred to the supramolecular scaffold yielding enantioenriched helical structures, will be presented. The importance of the thermodynamics and kinetics associated with those processes is stressed, especially the influence that parameters such as the helix reversal and mismatch penalties exert on the achievement of amplification of asymmetry in co-assembled systems will also be considered. Remarkable examples of breaking symmetry, in which chiral supramolecular polymers can be attained from achiral self-assembling units by applying external stimuli like stirring, solvent or light, are highlighted. Finally, the specific and promising applications of chiral supramolecular polymers are presented with recent relevant examples.
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Affiliation(s)
- Fátima García
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain.
| | - Rafael Gómez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain.
| | - Luis Sánchez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain.
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Tan ML, Ángeles Gutiérrez López M, Sakai N, Matile S. Anion-(π) n -π Catalytic Micelles. Angew Chem Int Ed Engl 2023; 62:e202310393. [PMID: 37574867 DOI: 10.1002/anie.202310393] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 08/08/2023] [Accepted: 08/11/2023] [Indexed: 08/15/2023]
Abstract
Anion-π catalysis operates by stabilizing anionic transition states on π-acidic aromatic surfaces. In anion-(π)n -π catalysis, π stacks add polarizability to strengthen interactions. In search of synthetic methods to extend π stacks beyond the limits of foldamers, the self-assembly of micelles from amphiphilic naphthalenediimides (NDIs) is introduced. To interface substrates and catalysts, charge-transfer complexes with dialkoxynaphthalenes (DANs), a classic in supramolecular chemistry, are installed. In π-stacked micelles, the rates of bioinspired ether cyclizations exceed rates on monomers in organic solvents by far. This is particularly impressive considering that anion-π catalysis in water has been elusive so far. Increasing rates with increasing π acidity of the micelles evince operational anion-(π)n -π catalysis. At maximal π acidity, autocatalytic behavior emerges. Dependence on position and order in confined micellar space promises access to emergent properties. Anion-(π)n -π catalytic micelles in water thus expand supramolecular systems catalysis accessible with anion-π interactions with an inspiring topic of general interest and great perspectives.
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Affiliation(s)
- Mei-Ling Tan
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
| | | | - Naomi Sakai
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
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5
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Reardon TJ, Na B, Parquette JR. Dissipative self-assembly of a proline catalyst for temporal regulation of the aldol reaction. NANOSCALE 2022; 14:14711-14716. [PMID: 36169284 DOI: 10.1039/d2nr03991e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The spatiotemporal regulation of chemical reactivity in biological systems permits a network of metabolic reactions to take place within the same cellular environment. The exquisite control of reactivity is often mediated by out-of-equilibrium structures that remain functional only as long as fuel is present to maintain the higher energy, active state. An important goal in supramolecular chemistry aims to develop functional, energy dissipating systems that approach the sophistication of biological machinery. The challenge is to create strategies that couple the energy consumption needed to promote a molecule to a higher energy, assembled state to a functional property such as catalytic activity. In this work, we demonstrated that the assembly of a spiropyran (SP) dipeptide (1) transiently promoted the proline-catalyzed aldol reaction in water when visible light was present as fuel. The transient catalytic activity emerged from 1 under light illumination due to the photoisomerization of the monomeric, O-protonated (1-MCH+) merocyanine form to the spiropyran (1-SP) state, which rapidly assembled into nanosheets capable of catalyzing the aldol reaction in water. When the light source was removed, thermal isomerization to the more stable MCH+ form caused the nanosheets to dissociate into a catalytically inactive, monomeric state. Under these conditions, the aldol reaction could be repeatedly activated and deactivated by switching the light source on and off.
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Affiliation(s)
- Thomas J Reardon
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W. 18th Ave. Columbus, Ohio 43210, USA.
| | - Baichuan Na
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W. 18th Ave. Columbus, Ohio 43210, USA.
| | - Jon R Parquette
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W. 18th Ave. Columbus, Ohio 43210, USA.
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6
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Liang S, Wu XL, Zong MH, Lou WY. Construction of Zn-heptapeptide bionanozymes with intrinsic hydrolase-like activity for degradation of di(2-ethylhexyl) phthalate. J Colloid Interface Sci 2022; 622:860-870. [PMID: 35561606 DOI: 10.1016/j.jcis.2022.04.122] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 04/20/2022] [Accepted: 04/21/2022] [Indexed: 11/28/2022]
Abstract
Nanozyme with intrinsic enzyme-like activity has emerged as favorite artificial catalyst during recent years. However, current nanozymes are mainly limited to inorganic-derived nanomaterials, while biomolecule-sourced nanozyme (bionanozyme) are rarely reported. Herein, inspired by the basic structure of natural hydrolase family, we constructed 3 oligopeptide-based bionanozymes with intrinsic hydrolase-like activity by implementing zinc induced self-assembly of histidine-rich heptapeptides. Under mild condition, divalent zinc (Zn2+) impelled the spontaneous assembly of short peptides (i.e. Ac-IHIHIQI-CONH2, Ac-IHIHIYI-CONH2, and Ac-IHVHLQI-CONH2), forming hydrolase-mimicking bionanozymes with β-sheet secondary conformation and nanofibrous architecture. As expected, the resultant bionanozymes were able to hydrolyze a serious of p-nitrophenyl esters, including not only the simple substrate with short side-chain (p-NPA), but also more complicated ones (p-NPB, p-NPH, p-NPO, and p-NPS). Moreover, the self-assembled Zn-heptapeptide bionanozymes were also proven to be capable of degrading di(2-ethylhexyl) phthalate (DEHP), a typical plasticizer, showing great potential for environmental remediation. Based on this study, we aim to provide theoretical references and exemplify a specific case for directing the construction and application of bionanozyme.
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Affiliation(s)
- Shan Liang
- Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Xiao-Ling Wu
- Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Min-Hua Zong
- Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Wen-Yong Lou
- Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Province Key Laboratory for Green Processing of Natural Products and Product Safety, South China University of Technology, Guangzhou 510640, China.
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7
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Catalytic Peptides: the Challenge between Simplicity and Functionality. Isr J Chem 2022. [DOI: 10.1002/ijch.202200029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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8
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Lorenzetto T, Frigatti D, Fabris F, Scarso A. Nanoconfinement Effects of Micellar Media in Asymmetric Catalysis. Adv Synth Catal 2022. [DOI: 10.1002/adsc.202200225] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Tommaso Lorenzetto
- Dipartimento di Scienze Molecolari e Nanosistemi Università Ca' Foscari Venezia Via Torino 155 30172 Venezia Mestre Italy
| | - Davide Frigatti
- Dipartimento di Scienze Molecolari e Nanosistemi Università Ca' Foscari Venezia Via Torino 155 30172 Venezia Mestre Italy
| | - Fabrizio Fabris
- Dipartimento di Scienze Molecolari e Nanosistemi Università Ca' Foscari Venezia Via Torino 155 30172 Venezia Mestre Italy
| | - Alessandro Scarso
- Dipartimento di Scienze Molecolari e Nanosistemi Università Ca' Foscari Venezia Via Torino 155 30172 Venezia Mestre Italy
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9
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Chen Z, Zhou P, Guo Y, Anna, Bai J, Qiao R, Li C. Guanosine Borate Hydrogel and Self-Assembled Nanostructures Capable of Enantioselective Aldol Reaction in Water. J Org Chem 2022; 87:2624-2631. [PMID: 35104141 DOI: 10.1021/acs.joc.1c02573] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A guanosine-based hydrogel formed by the self-assembly of guanosine and 4-((l-prolinamide)methyl)phenylboronic acid was constructed. The G quartets were selectively stabilized by K+ ions to form a self-supporting transparent hydrogel. These guanosine-derived assemblies were used to catalyze the aldol reaction in water without any additives, affording desirable conversion and enantioselectivity of the product. The controlled assays of small-molecule components indicated that the stable assemblies were the definite species that achieved high enantioselective catalysis. The current catalytic system can be readily recovered by simple extraction and still acquired good performance of the reaction after four cycles.
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Affiliation(s)
- Zhaohang Chen
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Pengcheng Zhou
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Yuanxia Guo
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Anna
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Jiakun Bai
- Key Laboratory of Magnetic Molecules and Magnetic Information Material, Ministry of Education, College of Chemistry and Material, Shanxi Normal University, Linfen 041004, P. R. China
| | - Renzhong Qiao
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Chao Li
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
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10
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Zvaigzne M, Samokhvalov P, Gun'ko YK, Nabiev I. Anisotropic nanomaterials for asymmetric synthesis. NANOSCALE 2021; 13:20354-20373. [PMID: 34874394 DOI: 10.1039/d1nr05977g] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The production of enantiopure chemicals is an essential part of modern chemical industry. Hence, the emergence of asymmetric catalysis led to dramatic changes in the procedures of chemical synthesis, and now it provides the most advantageous and economically executable solution for large-scale production of chiral chemicals. In recent years, nanostructures have emerged as potential materials for asymmetric synthesis. Indeed, on the one hand, nanomaterials offer great opportunities as catalysts in asymmetric catalysis, due to their tunable absorption, chirality, and unique energy transfer properties; on the other hand, the advantages of the larger surface area, increased number of unsaturated coordination centres, and more accessible active sites open prospects for catalyst encapsulation, partial or complete, in a nanoscale cavity, pore, pocket, or channel leading to alteration of the chemical reactivity through spatial confinement. This review focuses on anisotropic nanomaterials and considers the state-of-the-art progress in asymmetric synthesis catalysed by 1D, 2D and 3D nanostructures. The discussion comprises three main sections according to the nanostructure dimensionality. We analyze recent advances in materials and structure development, discuss the functional role of the nanomaterials in asymmetric synthesis, chirality, confinement effects, and reported enantioselectivity. Finally, the new opportunities and challenges of anisotropic 1D, 2D, and 3D nanomaterials in asymmetric synthesis, as well as the future prospects and current trends of the design and applications of these materials are analyzed in the Conclusions and outlook section.
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Affiliation(s)
- Mariya Zvaigzne
- Laboratory of Nano-Bioengineering, National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), 115409 Moscow, Russia
| | - Pavel Samokhvalov
- Laboratory of Nano-Bioengineering, National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), 115409 Moscow, Russia
| | - Yurii K Gun'ko
- Laboratory of Nano-Bioengineering, National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), 115409 Moscow, Russia
- School of Chemistry, Trinity College, the University of Dublin, Dublin 2, Ireland.
| | - Igor Nabiev
- Laboratory of Nano-Bioengineering, National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), 115409 Moscow, Russia
- Laboratoire de Recherche en Nanosciences, LRN-EA4682, 51 rue Cognacq Jay, Université de Reims Champagne-Ardenne, 51100 Reims, France
- Sechenov First Moscow State Medical University (Sechenov University), 8-2 Trubetskaya Str., 119991 Moscow, Russia
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11
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Shen Y, Wang Y, Hamley IW, Qi W, Su R, He Z. Chiral self-assembly of peptides: Toward the design of supramolecular polymers with enhanced chemical and biological functions. Prog Polym Sci 2021. [DOI: 10.1016/j.progpolymsci.2021.101469] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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12
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Sinibaldi A, Della Penna F, Ponzetti M, Fini F, Marchesan S, Baschieri A, Pesciaioli F, Carlone A. Asymmetric Organocatalysis Accelerated via Self‐Assembled Minimal Structures. European J Org Chem 2021. [DOI: 10.1002/ejoc.202101042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Arianna Sinibaldi
- Department of Physical and Chemical Sciences Università degli Studi dell'Aquila Via Vetoio 67100 L'Aquila Italy
| | - Francesca Della Penna
- Department of Physical and Chemical Sciences Università degli Studi dell'Aquila Via Vetoio 67100 L'Aquila Italy
| | - Marco Ponzetti
- Department of Biotechnological and Applied Clinical Sciences Università degli Studi dell'Aquila Via Vetoio 67100 L'Aquila Italy
| | - Francesco Fini
- Department of Life Sciences Università degli Studi di Modena e Reggio Emilia Via G. Campi 103 41125 Modena Italy
| | - Silvia Marchesan
- Department of Chemical and Pharmaceutical Sciences Università degli Studi di Trieste Via Giorgieri 1 34127 Trieste Italy
- Unit of Trieste National Interuniversity Consortium of Materials Science and Technology (INSTM) Via Giorgieri 1 34127 Trieste Italy
| | - Andrea Baschieri
- Department of Physical and Chemical Sciences Università degli Studi dell'Aquila Via Vetoio 67100 L'Aquila Italy
- Istituto per la Sintesi Organica e la Fotoreattività Consiglio Nazionale delle Ricerche Via P. Gobetti 101 40129 Bologna Italy
| | - Fabio Pesciaioli
- Department of Physical and Chemical Sciences Università degli Studi dell'Aquila Via Vetoio 67100 L'Aquila Italy
| | - Armando Carlone
- Department of Physical and Chemical Sciences Università degli Studi dell'Aquila Via Vetoio 67100 L'Aquila Italy
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Hamley IW. Biocatalysts Based on Peptide and Peptide Conjugate Nanostructures. Biomacromolecules 2021; 22:1835-1855. [PMID: 33843196 PMCID: PMC8154259 DOI: 10.1021/acs.biomac.1c00240] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 03/31/2021] [Indexed: 12/15/2022]
Abstract
Peptides and their conjugates (to lipids, bulky N-terminals, or other groups) can self-assemble into nanostructures such as fibrils, nanotubes, coiled coil bundles, and micelles, and these can be used as platforms to present functional residues in order to catalyze a diversity of reactions. Peptide structures can be used to template catalytic sites inspired by those present in natural enzymes as well as simpler constructs using individual catalytic amino acids, especially proline and histidine. The literature on the use of peptide (and peptide conjugate) α-helical and β-sheet structures as well as turn or disordered peptides in the biocatalysis of a range of organic reactions including hydrolysis and a variety of coupling reactions (e.g., aldol reactions) is reviewed. The simpler design rules for peptide structures compared to those of folded proteins permit ready ab initio design (minimalist approach) of effective catalytic structures that mimic the binding pockets of natural enzymes or which simply present catalytic motifs at high density on nanostructure scaffolds. Research on these topics is summarized, along with a discussion of metal nanoparticle catalysts templated by peptide nanostructures, especially fibrils. Research showing the high activities of different classes of peptides in catalyzing many reactions is highlighted. Advances in peptide design and synthesis methods mean they hold great potential for future developments of effective bioinspired and biocompatible catalysts.
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Affiliation(s)
- Ian W. Hamley
- Department of Chemistry, University of Reading, RG6 6AD Reading, United Kingdom
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14
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Distaffen HE, Jones CW, Abraham BL, Nilsson BL. Multivalent display of chemical signals on
self‐assembled
peptide scaffolds. Pept Sci (Hoboken) 2021. [DOI: 10.1002/pep2.24224] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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15
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Aster A, Rumble C, Bornhof AB, Huang HH, Sakai N, Šolomek T, Matile S, Vauthey E. Long-lived triplet charge-separated state in naphthalenediimide based donor-acceptor systems. Chem Sci 2021; 12:4908-4915. [PMID: 34168763 PMCID: PMC8179635 DOI: 10.1039/d1sc00285f] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
1,4,5,8-Naphthalenediimides (NDIs) are widely used motifs to design multichromophoric architectures due to their ease of functionalisation, their high oxidative power and the stability of their radical anion. The NDI building block can be incorporated in supramolecular systems by either core or imide functionalization. We report on the charge-transfer dynamics of a series of electron donor-acceptor dyads consisting of a NDI chromophore with one or two donors linked at the axial, imide position. Photo-population of the core-centred π-π* state is followed by ultrafast electron transfer from the electron donor to the NDI. Due to a solvent dependent singlet-triplet equilibrium inherent to the NDI core, both singlet and triplet charge-separated states are populated. We demonstrate that long-lived charge separation in the triplet state can be achieved by controlling the mutual orientation of the donor-acceptor sub-units. By extending this study to a supramolecular NDI-based cage, we also show that the triplet charge-separation yield can be increased by tuning the environment.
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Affiliation(s)
- Alexander Aster
- Department of Physical Chemistry, University of Geneva CH-1211 Geneva Switzerland
| | - Christopher Rumble
- Department of Physical Chemistry, University of Geneva CH-1211 Geneva Switzerland
| | - Anna-Bea Bornhof
- Department of Organic Chemistry, University of Geneva CH-1211 Geneva Switzerland
| | - Hsin-Hua Huang
- Department of Chemistry, University of Basel St. Johanns-Ring 19 Basel 4056 Switzerland
| | - Naomi Sakai
- Department of Organic Chemistry, University of Geneva CH-1211 Geneva Switzerland
| | - Tomáš Šolomek
- Department of Chemistry, University of Basel St. Johanns-Ring 19 Basel 4056 Switzerland
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva CH-1211 Geneva Switzerland
| | - Eric Vauthey
- Department of Physical Chemistry, University of Geneva CH-1211 Geneva Switzerland
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16
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Kabir AMR, Sada K, Kakugo A. Controlling the length of self-assembled microtubes through mechanical stress-induced scission. Chem Commun (Camb) 2021; 57:468-471. [PMID: 33367340 DOI: 10.1039/d0cc07327j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We demonstrate that mechanical stress-induced scission is an effective strategy to control the length of self-assembled microtubes. By applying mechanical stress with variable magnitude and mode, the length of microtubes can be tightly regulated. We have succeeded in reducing the average length of microtubes ∼twenty-fold through stretching and compression. The mechanical stress-induced scission of self-assembled, long microtubes into smaller fragments has no adverse effect on the functionality of the microtubes. This work will foster the applications of length-controlled, self-assembled microtubes in various fields.
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Yang X, Zhang L, Liang Y, Wang Y, Shen Y, Xing Q, Qi W, Wang P, Liu X, Yang M, Su R, He M, He Z. Self-Assembled Bio-Organometallic Nanocatalysts for Highly Enantioselective Direct Aldol Reactions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:13735-13742. [PMID: 33175547 DOI: 10.1021/acs.langmuir.0c01485] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Supramolecular nanocatalysts were designed for asymmetric reactions through the self-assembly process of a bio-organometallic molecule, ferrocene-l-prolinamide (Fc-CO-NH-P). Fc-CO-NH-P could self-assemble into versatile nanostructures in water, including nanospheres, nanosheets, nanoflowers, and pieces. In particular, the self-assembled nanoflowers exhibited a superior specific surface area, high stability, and delicate three-dimensional (3D) chiral catalytic active sites. The nanoflowers could serve as heterogeneous catalysts with an excellent catalytic performance toward direct aldol reactions in aqueous solution, achieving both high yield (>99%) and stereoselectivity (anti/syn = 97:3, ee% >99%). This study proposed a significant strategy to fabricate supramolecular chiral catalysts, serving as a favorable template for designing new asymmetric catalysts.
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Affiliation(s)
- Xuejiao Yang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Liwei Zhang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Yaoyu Liang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Yuefei Wang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
- Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Yuhe Shen
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Qiguo Xing
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Wei Qi
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, P. R. China
- Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Pengfei Wang
- State Key Laboratory of Precision Measuring Technology and Instruments, Tianjin University, Tianjin 30072, P. R. China
| | - Xiao Liu
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Mengyao Yang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Rongxin Su
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, P. R. China
- Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Mingxia He
- State Key Laboratory of Precision Measuring Technology and Instruments, Tianjin University, Tianjin 30072, P. R. China
| | - Zhimin He
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, P. R. China
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18
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Mukherjee A, Sakurai T, Seki S, Ghosh S. Ultrathin Two Dimensional (2D) Supramolecular Assembly and Anisotropic Conductivity of an Amphiphilic Naphthalene-Diimide. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:13096-13103. [PMID: 33103440 DOI: 10.1021/acs.langmuir.0c02604] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Two-dimensional (2D)-supramolecular assemblies of π-conjugated chromophores are relatively less common compared to a large number of recent examples on their low dimensional (0D or 1D) assemblies or 3D architectures. This article reports a rational design for the 2D supramolecular assembly of an amphiphilic core-substituted naphthalene-diimide derivative (cNDI-1). The building block contains a naphthalene-diimide (NDI) chromophore, symmetrically substituted with two dodecyl chains from the aromatic core while the imide positions are functionalized with two hydrophilic wedges containing oligo-oxyethylene chains. In water, it exhibits entropically favorable self-assembly with a critical aggregation concentration of 1.5 × 10-5 M and a lower critical solution temperature of 55 °C. The UV/vis absorption spectrum in water shows bathochromically shifted absorption bands compared to that of the monomeric dye in THF, indicating offset π-stacking among the NDI chromophores. C-H symmetric and asymmetric stretching frequencies in the FT-IR spectrum support the presence of organized hydrocarbon chains in trans conformation in the self-assembled state, similar to that in the crystalline n-alkanes, which is further supported by studying the general polarization (GP) values of a noncovalently entrapped Laurdan dye. The atomic force microscopy (AFM) image shows the formation of ultrathin (height < 2.0 nm) ribbons for the spontaneously assembled sample which eventually produces a large-area 2D nanosheet by the lateral organization. The powder X-ray diffraction pattern of the drop-casted film, prepared from the preformed aggregates, reveals sharp peaks that indicate a crystalline lamellar packing along the direction of the 2D growth. Differential scanning calorimetry trace shows the melting of the crystalline alkyl chain domain at T > 75 °C, which destroys the 2D assembly. Local-scale photoconductivity of the ordered 2D assembly, studied by the flash-photolysis time-resolved microwave conductivity (FP-TRMC) technique, reveals an anisotropic conductivity with ∼3 times larger conductivity along the parallel direction compared to that along the perpendicular one.
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Affiliation(s)
- Anurag Mukherjee
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A and 2B Raja S. C. Mullick Road, Kolkata 700032, India
| | - Tsuneaki Sakurai
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Shu Seki
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Suhrit Ghosh
- School of Applied and Interdisciplinary Sciences, Indian Association for the Cultivation of Science, 2A and 2B Raja S. C. Mullick Road, Kolkata 700032, India
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19
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Li J, Zhu M, Wang M, Qi W, Su R, He Z. Molecularly imprinted peptide-based enzyme mimics with enhanced activity and specificity. SOFT MATTER 2020; 16:7033-7039. [PMID: 32667008 DOI: 10.1039/d0sm00635a] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We herein report the construction of peroxidase (POD)-mimicking catalysts based on the strategy of peptide assembly and molecular imprinting. Upon co-assembly of Fmoc-FFH and Hemin, we firstly fabricated CA-H/Hemin which displayed POD-like catalytic activity and showed a 21-fold rate acceleration in the oxidation of 2,2'-azinobis-(3-ethylbenzthiazoline-6-sulphonate) (ABTS) compared to the uncatalyzed reaction. Then, upon combining CA-H/Hemin with the ABTS-imprinted polymer, the obtained imprinted catalyst (MIP-H/Hemin) showed 52-fold acceleration due to the enhanced re-binding toward ABTS. Moreover, by introducing cationic monomers, a 137-fold rate enhancement was further achieved for the positively charged imprinted catalyst (MIP+-H/Hemin), from the synergistic effect of molecular imprinting and electrostatic attraction. Remarkably, by comparing the catalytic activity of these POD mimics towards ABTS and 3,3',5,5'-tetramethylbenzidine (TMB), we also highlighted the substrate specificity of MIP-H/Hemin and MIP+-H/Hemin toward ABTS. This study provides a promising approach to improve the catalytic activity and specificity of peptide-based enzyme mimics.
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Affiliation(s)
- Jingyi Li
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300350, P. R. China.
| | - Mingjie Zhu
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300350, P. R. China.
| | - Mengfan Wang
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300350, P. R. China. and Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin 300350, P. R. China
| | - Wei Qi
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300350, P. R. China. and Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin 300350, P. R. China and The Co-Innovation Centre of Chemistry and Chemical Engineering of Tianjin, Tianjin, 300350, P. R. China
| | - Rongxin Su
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300350, P. R. China. and Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin 300350, P. R. China and The Co-Innovation Centre of Chemistry and Chemical Engineering of Tianjin, Tianjin, 300350, P. R. China
| | - Zhimin He
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300350, P. R. China.
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20
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Rather IA, Wagay SA, Ali R. Emergence of anion-π interactions: The land of opportunity in supramolecular chemistry and beyond. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2020.213327] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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21
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Ghimire G, Moore MM, Leuschen R, Nagasaka S, Kameta N, Masuda M, Higgins DA, Ito T. Influences of Hydrogen Bonding-Based Stabilization of Bolaamphiphile Layers on Molecular Diffusion within Organic Nanotubes Having Inner Carboxyl Groups. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:6145-6153. [PMID: 32396729 DOI: 10.1021/acs.langmuir.0c00556] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
This paper reports molecular diffusion behavior in two bolaamphiphile-based organic nanotubes having inner carboxyl groups with different inner dimeters (10 and 20 nm) and wall structures, COOH-ONT10nm and COOH-ONT20nm, using imaging fluorescence correlation spectroscopy (imaging FCS). The results were compared to those previously obtained in a similar nanotube with inner amine groups (NH2-ONT10nm). COOH-ONT10nm, as with NH2-ONT10nm, were formed from a rolled bolaamphiphile layer incorporating triglycine moieties, whereas COOH-ONT20nm consisted of four stacks of triglycine-free bolaamphiphile layers. Imaging FCS measurements were carried out for anionic sulforhodamine B (SRB), zwitterionic/cationic rhodamine B (RB), and cationic rhodamine-123 (R123) diffusing within ONTs (1-9 μm long) at different pH (3.4-8.4) and ionic strengths (1.6-500 mM). Diffusion coefficients (D) of these dyes in the ONTs were very small (0.01-0.1 μm2/s), reflecting the significant contributions of molecule-nanotube interactions to diffusion. The D of SRB was larger at higher pH and ionic strength, indicating the essential role of electrostatic repulsion that was enhanced by the deprotonation of the inner carboxyl groups. Importantly, the D of SRB was virtually independent of nanotube inner diameter and wall structure, indicating the diffusion of the hydrophilic molecule was controlled by short time scale adsorption/desorption processes onto the inner surface. In contrast, pH effects on D were less clear for relatively hydrophobic R123 and RB, suggesting the significant contributions of non-Coulombic interactions. Interestingly, the diffusion of these molecules in COOH-ONT20nm was slower than in COOH-ONT10nm. Slower diffusion in COOH-ONT20nm was attributable to relatively efficient partitioning of the hydrophobic dyes into the bolaamphiphile layers, which was reduced in COOH-ONT10nm due to the stabilization of its layer by polyglycine-II-type hydrogen bonding networks. These results show that, by tuning the bolaamphiphile structures and their intermolecular interactions, unique environments can be created within the nanospaces for enhanced molecular separations and reactions.
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Affiliation(s)
- Govinda Ghimire
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506-0401, United States
| | - Mikaela M Moore
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506-0401, United States
| | - Rebecca Leuschen
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506-0401, United States
| | - Shinobu Nagasaka
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506-0401, United States
| | - Naohiro Kameta
- Nanomaterials Research Institute, Department of Materials and Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Mitsutoshi Masuda
- Research Institute for Sustainable Chemistry, Department of Materials and Chemistry, AIST, Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Daniel A Higgins
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506-0401, United States
| | - Takashi Ito
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506-0401, United States
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22
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Pham AT, Matile S. Peptide Stapling with Anion-π Catalysts. Chem Asian J 2020; 15:1562-1566. [PMID: 32311232 DOI: 10.1002/asia.202000309] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 04/01/2020] [Indexed: 12/12/2022]
Abstract
We report design, synthesis and evaluation of a series of naphthalenediimides (NDIs) that are bridged with short peptides. Reminiscent of peptide stapling technologies, the macrocycles are conveniently accessible by a chromogenic nucleophilic aromatic substitution of two bromides in the NDI core with two thiols from cysteine sidechains. The dimension of core-bridged NDIs matches that of one turn of an α helix. NDI-stapled peptides exist as two, often separable atropisomers. Introduction of tertiary amine bases in amino-acid sidechains above the π-acidic NDI surface affords operational anion-π catalysts. According to an enolate chemistry benchmark reaction, anion-π catalysis next to peptides occurs with record chemoselectivity but weak enantioselectivity. Catalytic activity drops with increasing distance of the amine base to the NDI surface, looser homocysteine bridges, mismatched, shortened and elongated α-helix turns, and acyclic peptide controls. Elongation of isolated turns into short α helices significantly increases activity. This increase is consistent with remote control of anion-π catalysis from the α-helix macrodipole.
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Affiliation(s)
- Anh-Tuan Pham
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva, Geneva, Switzerland
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23
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Shimizu T, Ding W, Kameta N. Soft-Matter Nanotubes: A Platform for Diverse Functions and Applications. Chem Rev 2020; 120:2347-2407. [PMID: 32013405 DOI: 10.1021/acs.chemrev.9b00509] [Citation(s) in RCA: 106] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Self-assembled organic nanotubes made of single or multiple molecular components can be classified into soft-matter nanotubes (SMNTs) by contrast with hard-matter nanotubes, such as carbon and other inorganic nanotubes. To date, diverse self-assembly processes and elaborate template procedures using rationally designed organic molecules have produced suitable tubular architectures with definite dimensions, structural complexity, and hierarchy for expected functions and applications. Herein, we comprehensively discuss every functions and possible applications of a wide range of SMNTs as bulk materials or single components. This Review highlights valuable contributions mainly in the past decade. Fifteen different families of SMNTs are discussed from the viewpoints of chemical, physical, biological, and medical applications, as well as action fields (e.g., interior, wall, exterior, whole structure, and ensemble of nanotubes). Chemical applications of the SMNTs are associated with encapsulating materials and sensors. SMNTs also behave, while sometimes undergoing morphological transformation, as a catalyst, template, liquid crystal, hydro-/organogel, superhydrophobic surface, and micron size engine. Physical functions pertain to ferro-/piezoelectricity and energy migration/storage, leading to the applications to electrodes or supercapacitors, and mechanical reinforcement. Biological functions involve artificial chaperone, transmembrane transport, nanochannels, and channel reactors. Finally, medical functions range over drug delivery, nonviral gene transfer vector, and virus trap.
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Affiliation(s)
- Toshimi Shimizu
- Nanomaterials Research Institute, Department of Materials and Chemistry , National Institute of Advanced Industrial Science and Technology , Tsukuba Central 5, 1-1-1 Higashi , Tsukuba , Ibaraki 305-8565 , Japan
| | - Wuxiao Ding
- Nanomaterials Research Institute, Department of Materials and Chemistry , National Institute of Advanced Industrial Science and Technology , Tsukuba Central 5, 1-1-1 Higashi , Tsukuba , Ibaraki 305-8565 , Japan
| | - Naohiro Kameta
- Nanomaterials Research Institute, Department of Materials and Chemistry , National Institute of Advanced Industrial Science and Technology , Tsukuba Central 5, 1-1-1 Higashi , Tsukuba , Ibaraki 305-8565 , Japan
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24
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Hoang M, Kumar RA, Buisson DA, Ling WL, Gravel E, Doris E. Self‐assembled Polydiacetylene Nanoribbons for Semi‐heterogeneous and Enantioselective Organocatalysis of Aldol Reactions in Water. ChemCatChem 2019. [DOI: 10.1002/cctc.201901960] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Minh‐Duc Hoang
- Service de Chimie Bioorganique et de Marquage (SCBM) CEAUniversité Paris-Saclay 91191 Gif-sur-Yvette France
| | - Ramar Arun Kumar
- Service de Chimie Bioorganique et de Marquage (SCBM) CEAUniversité Paris-Saclay 91191 Gif-sur-Yvette France
- SRM Research Institute, Department of ChemistrySRM Institute of Science and Technology Kattankulathur 603203 Chennai India
| | - David A. Buisson
- Service de Chimie Bioorganique et de Marquage (SCBM) CEAUniversité Paris-Saclay 91191 Gif-sur-Yvette France
| | - Wai Li Ling
- Univ. Grenoble Alpes, CEA, CNRS, IBS 38000 Grenoble France
| | - Edmond Gravel
- Service de Chimie Bioorganique et de Marquage (SCBM) CEAUniversité Paris-Saclay 91191 Gif-sur-Yvette France
| | - Eric Doris
- Service de Chimie Bioorganique et de Marquage (SCBM) CEAUniversité Paris-Saclay 91191 Gif-sur-Yvette France
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25
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Ji M, Mason ML, Modarelli DA, Parquette JR. Threading carbon nanotubes through a self-assembled nanotube. Chem Sci 2019; 10:7868-7877. [PMID: 31853346 PMCID: PMC6844271 DOI: 10.1039/c9sc02313e] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 07/31/2019] [Indexed: 12/21/2022] Open
Abstract
Achieving the co-assembly of more than one component represents an important challenge in the drive to create functional self-assembled nanomaterials. Multicomponent nanomaterials comprised of several discrete, spatially sorted domains of components with high degrees of internal order are particularly important for applications such as optoelectronics. In this work, single-walled carbon nanotubes (SWNTs) were threaded through the inner channel of nanotubes formed by the bolaamphiphilic self-assembly of a naphthalenediimide-lysine (NDI-Bola) monomer. The self-assembly process was driven by electrostatic interactions, as indicated by ζ-potential measurements, and cation-π interactions between the surface of the SWNT and the positively charged, NDI-Bola nanotube interior. To increase the threading efficiency, the NDI-Bola nanotubes were fragmented into shortened segments with lengths of <100 nm via sonication-induced shear, prior to co-assembly with the SWNTs. The threading process created an initial composite nanostructure in which the SWNTs were threaded by multiple, shortened segments of the NDI-Bola nanotube that progressively re-elongated along the SWNT surface into a continuous radial coating around the SWNT. The resultant composite structure displayed NDI-Bola wall thicknesses twice that of the parent nanotube, reflecting a bilayer wall structure, as compared to the monolayer structure of the parent NDI-Bola nanotube. As a final, co-axial outer layer, poly(p-phenyleneethynylene) (PPE-SO3Na, M W = 5.76 × 104, PDI - 1.11) was wrapped around the SWNT/NDI-Bola composite resulting in a three-component (SWNT/NDI-Bola/PPE-SO3Na) composite nanostructure.
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Affiliation(s)
- Mingyang Ji
- Department of Chemistry , The Ohio State University , 100 W. 18th Ave. , Columbus , Ohio 43210 , USA .
| | - McKensie L Mason
- Department of Chemistry , The Ohio State University , 100 W. 18th Ave. , Columbus , Ohio 43210 , USA .
| | - David A Modarelli
- Department of Chemistry , Center for Laser and Optical Spectroscopy , Knight Chemical Laboratory , The University of Akron , Akron , Ohio 44325-3601 , USA
| | - Jon R Parquette
- Department of Chemistry , The Ohio State University , 100 W. 18th Ave. , Columbus , Ohio 43210 , USA .
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26
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Tosi F, Stuart MCA, Smit H, Chen J, Feringa BL. Reorganization from Kinetically Stable Aggregation States to Thermodynamically Stable Nanotubes of BINOL-Derived Amphiphiles in Water. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:11821-11828. [PMID: 31424218 PMCID: PMC6740276 DOI: 10.1021/acs.langmuir.9b01989] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 08/14/2019] [Indexed: 06/10/2023]
Abstract
The synthesis and self-assembly behavior of newly designed BINOL-based amphiphiles is presented. With minor structural modifications, the aggregation of these amphiphiles could be successfully tuned to form different types of assemblies in water, ranging from vesicles to cubic structures. Simple sonication induced the rearrangement of different kinetically stable aggregates into thermodynamically stable self-assembled nanotubes, as observed by cryo-TEM.
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Affiliation(s)
- Filippo Tosi
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Marc C. A. Stuart
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Groningen
Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Hans Smit
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Jiawen Chen
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Ben L. Feringa
- Stratingh
Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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27
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Li X, Zhao Y. Chiral Gating for Size- and Shape-Selective Asymmetric Catalysis. J Am Chem Soc 2019; 141:13749-13752. [PMID: 31368701 DOI: 10.1021/jacs.9b06619] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A poor or mediocre stereoselectivity is a key roadblock for a chiral catalyst to find practical adoptions. We report a facile method to create a tunable chiral space near a chiral catalyst to augment its selectivity. The space was created rationally through templated polymerization within cross-linked micelles, using readily available amino acid derivatives. It provided gated entrance of reactants to the catalyst, enabling a mediocre prolinamide to catalyze aldol condensation in water with excellent yields and ee, in a size- and shape-selective manner.
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Affiliation(s)
- Xiaowei Li
- Department of Chemistry , Iowa State University , Ames , Iowa 50011-3111 , United States
| | - Yan Zhao
- Department of Chemistry , Iowa State University , Ames , Iowa 50011-3111 , United States
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28
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Singappuli-Arachchige D, Kobayashi T, Wang Z, Burkhow SJ, Smith EA, Pruski M, Slowing II. Interfacial Control of Catalytic Activity in the Aldol Condensation: Combining the Effects of Hydrophobic Environments and Water. ACS Catal 2019. [DOI: 10.1021/acscatal.9b00195] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Dilini Singappuli-Arachchige
- US DOE Ames Laboratory, Ames Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | | | - Zhuoran Wang
- US DOE Ames Laboratory, Ames Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Sadie J. Burkhow
- US DOE Ames Laboratory, Ames Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Emily A. Smith
- US DOE Ames Laboratory, Ames Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Marek Pruski
- US DOE Ames Laboratory, Ames Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Igor I. Slowing
- US DOE Ames Laboratory, Ames Iowa 50011, United States
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
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29
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Dorca Y, Greciano EE, Valera JS, Gómez R, Sánchez L. Hierarchy of Asymmetry in Chiral Supramolecular Polymers: Toward Functional, Helical Supramolecular Structures. Chemistry 2019; 25:5848-5864. [PMID: 30561853 DOI: 10.1002/chem.201805577] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 12/13/2018] [Indexed: 12/15/2022]
Abstract
The formation of helical structures through the supramolecular polymerization of a variety of self-assembling units is reviewed. These scaffolds are usually obtained by efficient transfer or amplification of chirality phenomena, in which the starting self-assembling molecules possess different elements of asymmetry, such as point or axial chirality. Relevant examples of helical supramolecular structures investigated under thermodynamic control are reviewed, and the helical outcome of remarkable examples of chiral entities obtained through kinetic control are also highlighted. Finally, selected examples of flexible macroscopic chirality and catalysis are described to illustrate the applicability of helical aggregates.
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Affiliation(s)
- Yeray Dorca
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria, s/n, 28040, Madrid, Spain
| | - Elisa E Greciano
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria, s/n, 28040, Madrid, Spain
| | - Jorge S Valera
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria, s/n, 28040, Madrid, Spain
| | - Rafael Gómez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria, s/n, 28040, Madrid, Spain
| | - Luis Sánchez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria, s/n, 28040, Madrid, Spain
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Zhao Y, Cotelle Y, Liu L, López-Andarias J, Bornhof AB, Akamatsu M, Sakai N, Matile S. The Emergence of Anion-π Catalysis. Acc Chem Res 2018; 51:2255-2263. [PMID: 30188692 DOI: 10.1021/acs.accounts.8b00223] [Citation(s) in RCA: 132] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The objective of this Account is to summarize the first five years of anion-π catalysis. The general idea of anion-π catalysis is to stabilize anionic transition states on aromatic surfaces. This is complementary to the stabilization of cationic transition states on aromatic surfaces, a mode of action that occurs in nature and is increasingly used in chemistry. Anion-π catalysis, however, rarely occurs in nature and has been unexplored in chemistry. Probably because the attraction of anions to π surfaces as such is counterintuitive, anion-π interactions in general are much younger than cation-π interactions and remain under-recognized until today. Anion-π catalysis has emerged from early findings that anion-π interactions can mediate the transport of anions across lipid bilayer membranes. With this evidence for stabilization in the ground state secured, there was no reason to believe that anion-π interactions could not also stabilize anionic transition states. As an attractive reaction to develop anion-π catalysis, the addition of malonic acid half thioesters to enolate acceptors was selected. This choice was also made because without enzymes decarboxylation is preferred and anion-π interactions promised to catalyze selectively the disfavored but relevant enolate addition. Concerning anion-π catalysts, we started with naphthalene diimides (NDIs) because their intrinsic quadrupole moment is highly positive. The NDI scaffold was used to address questions such as the positioning of substrates on the catalytic π surface or the dependence of activity on the π acidity of this π surface. With the basics in place, the next milestone was the creation of anion-π enzymes, that is, enzymes that operate with an interaction rarely used in biology, at least on intrinsically π-acidic or highly polarizable aromatic amino-acid side chains. Electric-field-assisted anion-π catalysis addresses topics such as heterogeneous catalysis on electrodes and remote control of activity by voltage. On π-stacked foldamers, anion-(π) n-π catalysis was discovered. Fullerenes emerged as the scaffold of choice to explore contributions from polarizability. On fullerenes, anionic transition states are stabilized by large macrodipoles that appear only in response to their presence. With this growing collection of anion-π catalysts, several reactions beyond enolate addition have been explored so far. Initial efforts focused on asymmetric anion-π catalysis. Increasing enantioselectivity with increasing π acidity of the active π surface has been exemplified for enamine and iminium chemistry and for anion-π transaminase mimics. However, the delocalized nature of anion-π interactions calls for the stabilization of charge displacements over longer distances. The first step in this direction was the formation of cyclohexane rings with five stereogenic centers from achiral acyclic substrates on π-acidic surfaces. Moreover, the intrinsically disfavored exo transition state of anionic Diels-Alder reactions is stabilized selectively on π-acidic surfaces; endo products and otherwise preferred Michael addition products are completely suppressed. Taken together, we hope that these results on catalyst design and reaction scope will establish anion-π catalysis as a general principle in catalysis in the broadest sense.
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Affiliation(s)
- Yingjie Zhao
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Yoann Cotelle
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Le Liu
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | | | - Anna-Bea Bornhof
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Masaaki Akamatsu
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Naomi Sakai
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
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31
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Bhowmick S, Zhang L, Ouyang G, Liu M. Self-Assembly of Amphiphilic Dipeptide with Homo- and Heterochiral Centers and Their Application in Asymmetric Aldol Reaction. ACS OMEGA 2018; 3:8329-8336. [PMID: 31458965 PMCID: PMC6644911 DOI: 10.1021/acsomega.8b00852] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2018] [Accepted: 07/13/2018] [Indexed: 06/09/2023]
Abstract
Chiral self-assembly has drawn increasing interest in supramolecular chemistry. Here, we have designed amphiphilic l-Pro-l-Glu and l-Pro-d-Glu dipeptides and investigated their chiral self-assembly as well as asymmetric catalytic performance to disclose the synergistic effect of two stereogenic centers in the self-assembly and catalysis. It was found that both of the diastereomeric dipeptides can easily self-assemble into organogels with nanofibers. When these nanofibers were used as a catalyst for the asymmetric aldol reactions, enhanced enantioselectivity was obtained compared with their molecular state. Moreover, the L-L isomer assemblies showed higher enantioselectivity than the L-D isomer. It was revealed that both the supramolecular chirality of the nanofiber and the chiral catalytic site of l-proline played important roles in the asymmetric catalysis. In addition, the synergistic effect of two homochiral centers led to more efficient supramolecular catalysis that the L-L assemblies showed high yields (up to 97%), anti-diastereoselectivity (up to 99%), and excellent enantioselectivity (up to >99%).
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Affiliation(s)
- Sudipto Bhowmick
- Beijing
National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory
of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun Beiyijie No. 2, Haidian, Beijing 100190, P. R.
China
| | - Li Zhang
- Beijing
National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory
of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun Beiyijie No. 2, Haidian, Beijing 100190, P. R.
China
| | - Guanghui Ouyang
- Beijing
National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory
of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun Beiyijie No. 2, Haidian, Beijing 100190, P. R.
China
| | - Minghua Liu
- Beijing
National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory
of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun Beiyijie No. 2, Haidian, Beijing 100190, P. R.
China
- National
Center for Nanoscience and Technology, Zhongguancun Beiyitiao No. 11,
Haidian, Beijing 100190, P. R. China
- Collaborative
Innovation Center of Chemical Science and Engineering, Tianjin 300072, P. R. China
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32
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Abstract
Self-assembly of molecules often results in new emerging properties. Even very short peptides can self-assemble into structures with a variety of physical and structural characteristics. Remarkably, many peptide assemblies show high catalytic activity in model reactions reaching efficiencies comparable to those found in natural enzymes by weight. In this review, we discuss different strategies used to rationally develop self-assembled peptide catalysts with natural and unnatural backbones as well as with metal-containing cofactors.
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Affiliation(s)
- O Zozulia
- Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY 13244, USA.
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33
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Chen A, Okafor IS, Garcia C, Wang G. Synthesis and self-assembling properties of 4,6−O-benzylidene acetal protected D-glucose and D-glucosamine β−1,2,3−triazole derivatives. Carbohydr Res 2018; 461:60-75. [DOI: 10.1016/j.carres.2018.02.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 02/17/2018] [Accepted: 02/17/2018] [Indexed: 12/17/2022]
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34
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Shimizu T. Self-Assembly of Discrete Organic Nanotubes. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20170424] [Citation(s) in RCA: 80] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Toshimi Shimizu
- AIST Fellow, National Institute of Advanced Industrial Science and Technology, Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
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35
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Bornhof AB, Bauzá A, Aster A, Pupier M, Frontera A, Vauthey E, Sakai N, Matile S. Synergistic Anion–(π)n–π Catalysis on π-Stacked Foldamers. J Am Chem Soc 2018; 140:4884-4892. [DOI: 10.1021/jacs.8b00809] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
| | - Antonio Bauzá
- Department de Química, Universitat de les Illes Balears, Carretera de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain
| | | | | | - Antonio Frontera
- Department de Química, Universitat de les Illes Balears, Carretera de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain
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36
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Kameta N, Dong J, Yui H. Thermoresponsive PEG-Coated Nanotubes as Chiral Selectors of Amino Acids and Peptides. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2018; 14:e1800030. [PMID: 29532990 DOI: 10.1002/smll.201800030] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Revised: 02/13/2018] [Indexed: 08/23/2024]
Abstract
A series of nanotubes with a dense layer of short poly(ethylene glycol) (PEG) chains on the inner surface are prepared by means of a coassembly process using glycolipids and PEG derivatives. Dehydration of the PEG chains by heating increases the hydrophobicity of the nanotube channel and fluorescent-dye-labeled amino acids are extracted from bulk solution. Rehydration of the PEG chains by cooling results in back-extraction of the amino acids into the bulk solution. Because of the supramolecular chirality of the nanotubes, amino acid enantiomers can be separated in the back-extraction procedure, which is detectable with the naked eye as a change in fluorescence as the amino acids are released from the nanotubes. The efficiency and selectivity of the chiral separation are enhanced by tuning the chemical features and inner diameter of the nanotube channels. For example, compared with wide nanotube channels (8 nm), narrow nanotube channels (4 nm) provide more effective electrostatic attraction and hydrogen bond interaction environments for the transporting amino acids. Introduction of branched alkyl chains to the inner surface of the nanotubes enables chiral separation of peptides containing hydrophobic amino acids. The system described here provides a simple, quick, and on-site chiral separation in biological and medical fields.
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Affiliation(s)
- Naohiro Kameta
- Nanomaterials Research Institute, Department of Materials and Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki, 305-8565, Japan
| | - Jiuchao Dong
- Nanomaterials Research Institute, Department of Materials and Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, 1-1-1 Higashi, Tsukuba, Ibaraki, 305-8565, Japan
| | - Hiroharu Yui
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
- Water Frontier Science and Technology Research Center, Research Institute for Science and Technology, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
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37
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Harraz DM, Davis JT. A self-assembled peroxidase from 5'-GMP and heme. Chem Commun (Camb) 2018; 54:1587-1590. [PMID: 29368765 DOI: 10.1039/c7cc09900b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Guanosine 5'-monophosphate (5'-GMP) and Fe(iii)-heme form a supramolecular catalyst with peroxidase activity. Catalysis, which depends on self-assembly of 5'-GMP into a G-quadruplex that binds hemin, can be modulated by nucleotide concentration, temperature and the identity of the nucleotide's sugar.
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Affiliation(s)
- Deiaa M Harraz
- Department of Chemistry & Biochemistry, University of Maryland College Park, MD 20742, USA.
| | - Jeffery T Davis
- Department of Chemistry & Biochemistry, University of Maryland College Park, MD 20742, USA.
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38
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Yamashita Y, Yasukawa T, Yoo WJ, Kitanosono T, Kobayashi S. Catalytic enantioselective aldol reactions. Chem Soc Rev 2018; 47:4388-4480. [DOI: 10.1039/c7cs00824d] [Citation(s) in RCA: 165] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Recent developments in catalytic asymmetric aldol reactions have been summarized.
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Affiliation(s)
- Yasuhiro Yamashita
- Department of Chemistry
- School of Science
- The University of Tokyo
- Bunkyo-ku
- Japan
| | - Tomohiro Yasukawa
- Department of Chemistry
- School of Science
- The University of Tokyo
- Bunkyo-ku
- Japan
| | - Woo-Jin Yoo
- Department of Chemistry
- School of Science
- The University of Tokyo
- Bunkyo-ku
- Japan
| | - Taku Kitanosono
- Department of Chemistry
- School of Science
- The University of Tokyo
- Bunkyo-ku
- Japan
| | - Shū Kobayashi
- Department of Chemistry
- School of Science
- The University of Tokyo
- Bunkyo-ku
- Japan
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39
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Wang C, Matile S. Anion-π Catalysts with Axial Chirality. Chemistry 2017; 23:11955-11960. [DOI: 10.1002/chem.201702672] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Indexed: 12/23/2022]
Affiliation(s)
- Chao Wang
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Stefan Matile
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
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40
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Jiang J, Ouyang G, Zhang L, Liu M. Self‐Assembled Chiral Nanostructures as Scaffolds for Asymmetric Reactions. Chemistry 2017; 23:9439-9450. [DOI: 10.1002/chem.201700727] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Jian Jiang
- Key Laboratory of Nanosystem and Hierarchical FabricationCAS Center for Excellence in NanoscienceNational Center for Nanoscience and Technology No. 11 ZhongGuanCun BeiYiTiao 100190 Beijing P. R. China
| | - Guanghui Ouyang
- Key Laboratory of Colloid, Interface and Chemical ThermodynamicsInstitute of Chemistry, Chinese Academy of ScienceBeijing National Laboratory for Molecular Science (BNLMS) Zhongguancun North First Street 2 100190 Beijing P. R. China
| | - Li Zhang
- Key Laboratory of Colloid, Interface and Chemical ThermodynamicsInstitute of Chemistry, Chinese Academy of ScienceBeijing National Laboratory for Molecular Science (BNLMS) Zhongguancun North First Street 2 100190 Beijing P. R. China
| | - Minghua Liu
- Key Laboratory of Nanosystem and Hierarchical FabricationCAS Center for Excellence in NanoscienceNational Center for Nanoscience and Technology No. 11 ZhongGuanCun BeiYiTiao 100190 Beijing P. R. China
- Key Laboratory of Colloid, Interface and Chemical ThermodynamicsInstitute of Chemistry, Chinese Academy of ScienceBeijing National Laboratory for Molecular Science (BNLMS) Zhongguancun North First Street 2 100190 Beijing P. R. China
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41
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Liu L, Cotelle Y, Klehr J, Sakai N, Ward TR, Matile S. Anion-π catalysis: bicyclic products with four contiguous stereogenic centers from otherwise elusive diastereospecific domino reactions on π-acidic surfaces. Chem Sci 2017; 8:3770-3774. [PMID: 28580108 PMCID: PMC5436548 DOI: 10.1039/c7sc00525c] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 02/16/2017] [Indexed: 11/28/2022] Open
Abstract
Anion-π interactions have been introduced recently to catalysis. The idea of stabilizing anionic intermediates and transition states on π-acidic surfaces is a new fundamental concept. By now, examples exist for asymmetric enolate, enamine, iminium and transamination chemistry, and the first anion-π enzyme has been created. Delocalized over large aromatic planes, anion-π interactions appear particularly attractive to stabilize extensive long-distance charge displacements during domino processes. Moving on from the formation of cyclohexane rings with five stereogenic centers in one step on a π-acidic surface, we here focus on asymmetric anion-π catalysis of domino reactions that afford bicyclic products with quaternary stereogenic centers. Catalyst screening includes a newly synthesized, better performing anion-π version of classical organocatalysts from cinchona alkaloids, and anion-π enzymes. We find stereoselectivities that are clearly better than the best ones reported with conventional catalysts, culminating in unprecedented diastereospecificity. Moreover, we describe achiral salts as supramolecular chirality enhancers and report the first artificial enzyme that operates in neutral water with anion-π interactions, i.e., interactions that are essentially new to enzymes. Evidence in support of contributions of anion-π interactions to asymmetric catalysis include increasing diastereo- and enantioselectivity with increasing rates, i.e., asymmetric transition-state stabilization in the presence of π-acidic surfaces and inhibition with the anion selectivity sequence NO3- > Br- > BF4- > PF6-.
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Affiliation(s)
- Le Liu
- Department of Organic Chemistry , University of Geneva , Geneva , Switzerland . ; www.unige.ch/sciences/chiorg/matile/ ; Tel: +41 22 379 6523
| | - Yoann Cotelle
- Department of Organic Chemistry , University of Geneva , Geneva , Switzerland . ; www.unige.ch/sciences/chiorg/matile/ ; Tel: +41 22 379 6523
- National Centre of Competence in Research (NCCR) Molecular Systems Engineering , Switzerland . www.nccr-mse.ch
| | - Juliane Klehr
- National Centre of Competence in Research (NCCR) Molecular Systems Engineering , Switzerland . www.nccr-mse.ch
- Department of Chemistry , University of Basel , Basel , Switzerland
| | - Naomi Sakai
- Department of Organic Chemistry , University of Geneva , Geneva , Switzerland . ; www.unige.ch/sciences/chiorg/matile/ ; Tel: +41 22 379 6523
| | - Thomas R Ward
- National Centre of Competence in Research (NCCR) Molecular Systems Engineering , Switzerland . www.nccr-mse.ch
- Department of Chemistry , University of Basel , Basel , Switzerland
| | - Stefan Matile
- Department of Organic Chemistry , University of Geneva , Geneva , Switzerland . ; www.unige.ch/sciences/chiorg/matile/ ; Tel: +41 22 379 6523
- National Centre of Competence in Research (NCCR) Molecular Systems Engineering , Switzerland . www.nccr-mse.ch
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42
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Ji M, Daniels B, Shieh A, Modarelli DA, Parquette JR. Controlling the length of self-assembled nanotubes by sonication followed by polymer wrapping. Chem Commun (Camb) 2017; 53:12806-12809. [PMID: 29143056 DOI: 10.1039/c7cc07418b] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
In this work, we report that sonication, followed by polymer-wrapping, is an effective strategy to reduce the length of self-assembled nanotubes and suspend their propensity to self-heal into their elongated precursors.
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Affiliation(s)
- Mingyang Ji
- Department of Chemistry
- The Ohio State University
- Ohio 43210
- USA
| | - Brian Daniels
- Department of Chemistry
- The Ohio State University
- Ohio 43210
- USA
| | - Aileen Shieh
- Department of Chemistry
- The Ohio State University
- Ohio 43210
- USA
| | - David A. Modarelli
- Department of Chemistry and The Center for Laser and Optical Spectroscopy
- Knight Chemical Laboratory
- The University of Akron
- Akron
- USA
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43
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Ziganshin MA, Safiullina AS, Ziganshina SA, Gerasimov AV, Gorbatchuk VV. Non-zeolitic properties of the dipeptide l-leucyl–l-leucine as a result of the specific nanostructure formation. Phys Chem Chem Phys 2017; 19:13788-13797. [DOI: 10.1039/c7cp01393k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Non-zeolitic sorption properties of l-leucyl–l-leucine which results from a specific self-organization of the dipeptide into different micro- and nanostructures may be used for the separation of mixtures of organic compounds.
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Affiliation(s)
- Marat A. Ziganshin
- A. M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan, 420008
- Russia
| | - Aisylu S. Safiullina
- A. M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan, 420008
- Russia
| | - Sufia A. Ziganshina
- Kazan Zavoisky Physical-Technical Institute of the Kazan Scientific Center of the Russian Academy of Sciences
- Kazan, 420029
- Russia
| | | | - Valery V. Gorbatchuk
- A. M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan, 420008
- Russia
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44
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Wang C, Miros FN, Mareda J, Sakai N, Matile S. Asymmetric Anion-π Catalysis on Perylenediimides. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201608842] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Chao Wang
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - François N. Miros
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Jiri Mareda
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Naomi Sakai
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Stefan Matile
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
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45
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Wang C, Miros FN, Mareda J, Sakai N, Matile S. Asymmetric Anion-π Catalysis on Perylenediimides. Angew Chem Int Ed Engl 2016; 55:14422-14426. [DOI: 10.1002/anie.201608842] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Indexed: 01/21/2023]
Affiliation(s)
- Chao Wang
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - François N. Miros
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Jiri Mareda
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Naomi Sakai
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Stefan Matile
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
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46
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Al Kobaisi M, Bhosale SV, Latham K, Raynor AM, Bhosale SV. Functional Naphthalene Diimides: Synthesis, Properties, and Applications. Chem Rev 2016; 116:11685-11796. [DOI: 10.1021/acs.chemrev.6b00160] [Citation(s) in RCA: 557] [Impact Index Per Article: 69.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Mohammad Al Kobaisi
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
| | - Sidhanath V. Bhosale
- Polymers
and Functional Materials Division, CSIR-Indian Institute of Chemical Technology
, Hyderabad, Telangana-500007, India
| | - Kay Latham
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
| | - Aaron M. Raynor
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
| | - Sheshanath V. Bhosale
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
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47
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Singh N, Zhang K, Angulo-Pachón CA, Mendes E, van Esch JH, Escuder B. Tandem reactions in self-sorted catalytic molecular hydrogels. Chem Sci 2016; 7:5568-5572. [PMID: 30034697 PMCID: PMC6021788 DOI: 10.1039/c6sc01268j] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Accepted: 05/06/2016] [Indexed: 12/14/2022] Open
Abstract
By equipping mutually incompatible carboxylic acid and proline catalytic groups with different self-assembling motives we have achieved self-sorting of the resulting catalytic gelators, namely SucVal8 and ProValDoc, into different supramolecular fibers, thus preventing the acidic and basic catalytic groups from interfering with each other. The resulting spatial separation of the incompatible catalytic functions is found to be essential to achieve one-pot deacetalization-aldol tandem reactions with up to 85% efficiency and 90% enantioselectivity. On the contrary, when SucVal8 was co-assembled with a structurally similar catalytically active hydrogelator (ProVal8), self-sorting was precluded and no tandem catalysis was observed.
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Affiliation(s)
- Nishant Singh
- Departament de Química Inorgànica i Orgànica , Universitat Jaume I , E-12071 Castelló , Spain .
| | - Kai Zhang
- Department of Chemical Engineering , Delft University of Technology , Julianalaan 136 , 2628 BL Delft , The Netherlands .
| | - César A Angulo-Pachón
- Departament de Química Inorgànica i Orgànica , Universitat Jaume I , E-12071 Castelló , Spain .
| | - Eduardo Mendes
- Department of Chemical Engineering , Delft University of Technology , Julianalaan 136 , 2628 BL Delft , The Netherlands .
| | - Jan H van Esch
- Department of Chemical Engineering , Delft University of Technology , Julianalaan 136 , 2628 BL Delft , The Netherlands .
| | - Beatriu Escuder
- Departament de Química Inorgànica i Orgànica , Universitat Jaume I , E-12071 Castelló , Spain .
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48
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Abstract
Asymmetric organocatalysis often operates under near ambient conditions, which means it is air and moisture compatible. However, in many examples water is indeed necessary for achieving excellent catalytic results. Ranging from the addition of small amounts of water to a reaction, to complex catalytic systems in the presence of water as the only reaction medium, this review offers an illustrative classification of the uses of water in asymmetric organocatalysis.
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Affiliation(s)
- Ciril Jimeno
- Institute of Advanced Chemistry of Catalonia (IQAC-CSIC), Department of Biological Chemistry and Molecular Modelling, c/Jordi Girona 18-26, E08034 Barcelona, Spain.
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49
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Bolag A, Sakai N, Matile S. Dipolar Photosystems: Engineering Oriented Push-Pull Components into Double- and Triple-Channel Surface Architectures. Chemistry 2016; 22:9006-14. [DOI: 10.1002/chem.201600213] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2016] [Indexed: 01/19/2023]
Affiliation(s)
- Altan Bolag
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
- Inner Mongolia Key Laboratory for Physics and Chemistry of Functional Materials; Inner Mongolia Normal University; Hohhot P. R. China
| | - Naomi Sakai
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
| | - Stefan Matile
- Department of Organic Chemistry; University of Geneva; Geneva Switzerland
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Tena-Solsona M, Nanda J, Díaz-Oltra S, Chotera A, Ashkenasy G, Escuder B. Emergent Catalytic Behavior of Self-Assembled Low Molecular Weight Peptide-Based Aggregates and Hydrogels. Chemistry 2016; 22:6687-94. [PMID: 27004623 DOI: 10.1002/chem.201600344] [Citation(s) in RCA: 101] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2016] [Indexed: 01/19/2023]
Abstract
We report a series of short peptides possessing the sequence (FE)n or (EF)n and bearing l-proline at their N-terminus that self-assemble into high aspect ratio aggregates and hydrogels. We show that these aggregates are able to catalyze the aldol reaction, whereas non-aggregated analogues are catalytically inactive. We have undertaken an analysis of the results, considering the accessibility of catalytic sites, pKa value shifts, and the presence of hydrophobic pockets. We conclude that the presence of hydrophobic regions is indeed relevant for substrate solubilization, but that the active site accessibility is the key factor for the observed differences in reaction rates. The results presented here provide an example of the emergence of a new chemical property caused by self-assembly, and support the relevant role played by self-assembled peptides in prebiotic scenarios. In this sense, the reported systems can be seen as primitive aldolase I mimics, and have been successfully tested for the synthesis of simple carbohydrate precursors.
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Affiliation(s)
- Marta Tena-Solsona
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I, 12071, Castelló, Spain
| | - Jayanta Nanda
- Department of Chemistry, Ben-Gurion University of the Negev, Be'er Sheva, Israel
| | - Santiago Díaz-Oltra
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I, 12071, Castelló, Spain
| | - Agata Chotera
- Department of Chemistry, Ben-Gurion University of the Negev, Be'er Sheva, Israel
| | - Gonen Ashkenasy
- Department of Chemistry, Ben-Gurion University of the Negev, Be'er Sheva, Israel.
| | - Beatriu Escuder
- Departament de Química Inorgànica i Orgànica, Universitat Jaume I, 12071, Castelló, Spain.
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