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Punithakumari G. Anthraquinone Based Sensors for the Selective Detection of Cyanide Ion with Turn on Fluorescence with Logic Gate & Real Sample Applications. J Fluoresc 2024; 34:2073-2083. [PMID: 37695499 DOI: 10.1007/s10895-023-03397-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 08/10/2023] [Indexed: 09/12/2023]
Abstract
In recent years, there is an increasing interest in finding better and more efficient ways to detect CN- ions. Most of the anthraquinone-based probes show less fluorescence This paper presents the design and synthesis of a new anthraquinone based imine probe with good colorimetric sensing property and fluorescent turn on behavior toward CN- ion. Herein, we report a receptor with both colorimetric and fluorescent enhancement of cyanide ion in DMSO medium is synthesized. The synthesized receptor shows an immediate color change from orange to pink when cyanide is added; and it can be readily observed visually due to the presence of diverse p-conjugated systems in the receptor. These studies were confirmed by UV-Visible, PL studies, DFT, HRMS and 1H NMR titration. Moreover, this receptor shows 1:1 stoichiometry and micromolar detection limit. Further the receptor was applied to a real sample in finger millet (Eleusine Coracana) to detect the presence of cyanide ion. Moreover, the receptor is applicable toward INHIBITION, IMPLICATION logic gates with two input systems.
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Affiliation(s)
- Ganesan Punithakumari
- Department of Chemistry, K.Ramakrishnan College of Engineering (A), Tiruchirappalli, 621112, Tamil Nadu, India.
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Serafim MSM, Kronenberger T, Rocha REO, Rosa ADRA, Mello TLG, Poso A, Ferreira RS, Abrahão JS, Kroon EG, Mota BEF, Maltarollo VG. Aminopyrimidine Derivatives as Multiflavivirus Antiviral Compounds Identified from a Consensus Virtual Screening Approach. J Chem Inf Model 2024; 64:393-411. [PMID: 38194508 DOI: 10.1021/acs.jcim.3c01505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
Around three billion people are at risk of infection by the dengue virus (DENV) and potentially other flaviviruses. Worldwide outbreaks of DENV, Zika virus (ZIKV), and yellow fever virus (YFV), the lack of antiviral drugs, and limitations on vaccine usage emphasize the need for novel antiviral research. Here, we propose a consensus virtual screening approach to discover potential protease inhibitors (NS3pro) against different flavivirus. We employed an in silico combination of a hologram quantitative structure-activity relationship (HQSAR) model and molecular docking on characterized binding sites followed by molecular dynamics (MD) simulations, which filtered a data set of 7.6 million compounds to 2,775 hits. Lastly, docking and MD simulations selected six final potential NS3pro inhibitors with stable interactions along the simulations. Five compounds had their antiviral activity confirmed against ZIKV, YFV, DENV-2, and DENV-3 (ranging from 4.21 ± 0.14 to 37.51 ± 0.8 μM), displaying aggregator characteristics for enzymatic inhibition against ZIKV NS3pro (ranging from 28 ± 7 to 70 ± 7 μM). Taken together, the compounds identified in this approach may contribute to the design of promising candidates to treat different flavivirus infections.
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Affiliation(s)
- Mateus Sá Magalhães Serafim
- Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Thales Kronenberger
- Institute of Pharmacy, Pharmaceutical/Medicinal Chemistry and Tübingen Center for Academic Drug Discovery (TüCAD2), Eberhard Karls University Tübingen, Auf der Morgenstelle 8, Tübingen 72076, Germany
- Excellence Cluster "Controlling Microbes to Fight Infections" (CMFI), Tübingen 72076, Germany
- School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, Kuopio 70211, Finland
| | - Rafael Eduardo Oliveira Rocha
- Departamento de Bioquímica e Imunologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Amanda Del Rio Abreu Rosa
- Departamento de Bioquímica e Imunologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Thaysa Lara Gonçalves Mello
- Departamento de Produtos Farmacêuticos, Faculdade de Farmácia, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Antti Poso
- Institute of Pharmacy, Pharmaceutical/Medicinal Chemistry and Tübingen Center for Academic Drug Discovery (TüCAD2), Eberhard Karls University Tübingen, Auf der Morgenstelle 8, Tübingen 72076, Germany
- School of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, Kuopio 70211, Finland
- Department of Medical Oncology and Pneumology, University Hospital of Tübingen, Tübingen 70211, Germany
| | - Rafaela Salgado Ferreira
- Departamento de Bioquímica e Imunologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Jonatas Santos Abrahão
- Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Erna Geessien Kroon
- Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Bruno Eduardo Fernandes Mota
- Departamento de Análises Clínicas e Toxicológicas, Faculdade de Farmácia, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
| | - Vinícius Gonçalves Maltarollo
- Departamento de Produtos Farmacêuticos, Faculdade de Farmácia, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG 31270-901, Brazil
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Takayanagi N, Jindo T, Kim BS, Son YA, Kim SH, Matsumoto S. Interpretation of Absorption Spectra of Some Bisazomethine Dyes in a Crystalline State in Terms of Conformational Change and Exciton Interaction. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20180097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Naho Takayanagi
- Graduate School of Environmental and Information Sciences, Yokohama National University, 79-7 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa 240-8501, Japan
| | - Takumi Jindo
- Graduate School of Environmental and Information Sciences, Yokohama National University, 79-7 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa 240-8501, Japan
| | - Byung-Soon Kim
- Graduate School of Environmental and Information Sciences, Yokohama National University, 79-7 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa 240-8501, Japan
| | - Young-A Son
- School of Chemical and Biological Engineering, Chungnam National University, Daejeon 305-764, Korea
| | - Sung-Hoon Kim
- Department of Textile System Engineering, Kyungpook National University, Daegu 702-701, Korea
- School of Chemical Science & Technology, Zhanjiang National University, Zhanjiang 524048, P. R. China
| | - Shinya Matsumoto
- Graduate School of Environmental and Information Sciences, Yokohama National University, 79-7 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa 240-8501, Japan
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Jindo T, Kim BS, Akune Y, Horiguchi-Babamoto E, Lee KP, Kinashi K, Ueda Y, Matsumoto S. Effects of terminal alkyl substituents on the low-dimensional arrangement of π-stacked molecules in the crystal structures of bisazomethine dyes. Z KRIST-CRYST MATER 2016. [DOI: 10.1515/zkri-2016-1944] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Crystal structures of three bisazomethine dyes with dipropyl, dibutyl, and dihexyl substituents on their terminal amino groups are reported. To systematically interpret the effects of the terminal dialkyl substituents on the low-dimensional arrangements of the π–π stacked molecules, the structural features of the molecular geometries and the low-dimensional arrangements were compared with those in the reported crystal structure of two bisazomethine dyes, i.e. with terminal dimethylamino and diethylamino groups. Lattice energy calculations were also carried out to interpret the substitution effects from an energetic perspective. In the crystal structures of all five dyes, one-dimensional arrangements of the π–π stacked molecules were found. The slip angles between the π–π stacked molecules constituting the characteristic one-dimensional arrangements of the five bisazomethine dyes were distributed in the range of 24.66(4)–79.34(7)°. The lengths of the alkyl chains and projections of the terminal dialkyl substituents from the molecular planes in the five bisazomethine dyes were found to play significant roles in determining the slip angles between the π–π stacked molecules and the distances between the molecules aligned along the long molecular axes.
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Affiliation(s)
- Takumi Jindo
- Department of Environment and Natural Sciences , Graduate School of Environment and Information Sciences, Yokohama National University , 79-7, Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Byung-Soon Kim
- Department of Environment and Natural Sciences , Graduate School of Environment and Information Sciences, Yokohama National University , 79-7, Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Yoko Akune
- Department of Environment and Natural Sciences , Graduate School of Environment and Information Sciences, Yokohama National University , 79-7, Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Emi Horiguchi-Babamoto
- Department of Pharmaceutical Sciences , Faculty of Pharmaceutics, Musashino University , 1-1-20 Shinmachi, Nishitokyo-shi, Tokyo 202-8585, Japan
| | - Kyun-Phyo Lee
- Department of Chemical Science and Engineering , Graduate School of Engineering, Kobe University , Rokko, Nada, Kobe 657-8501, Japan
| | - Kenji Kinashi
- Department of Macromolecular Science and Engineering , Graduate School of Science and Technology, Kyoto Institute of Technology , Matsugasaki, Sakyo, Kyoto 606-8585, Japan
| | - Yasukiyo Ueda
- Department of Chemical Science and Engineering , Graduate School of Engineering, Kobe University , Rokko, Nada, Kobe 657-8501, Japan
| | - Shinya Matsumoto
- Department of Environment and Natural Sciences , Graduate School of Environment and Information Sciences, Yokohama National University , 79-7, Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
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