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Alikhani ME, Madebène B, Silvi B. Microsolvation of cobalt, nickel, and copper atoms with ammonia: a theoretical study of the solvated electron precursors. J Mol Model 2024; 30:220. [PMID: 38902588 DOI: 10.1007/s00894-024-06019-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 06/10/2024] [Indexed: 06/22/2024]
Abstract
CONTEXT The s-block metals dissolved in ammonia form metal-ammonia complexes with diffuse electrons which could be used for redox catalysis. In this theoretical paper, we investigated the possibility of the d-bloc transition metals (Mn, Fe, Co, Ni, and Cu) solvated by ammonia. It has been demonstrated that both Mn and Fe atoms undergo into an oxidative reaction with NH3 forming an inserted species, HMNH2. On the contrary, the Co, Ni, and Cu atoms can accommodate four NH3, via the coordination bond, to form the first solvation sphere within C2v, D2d, and Td point groups, respectively. Addition of a fifth NH3 constitute the second solvation shell by forming hydrogen bond with the other NH3s. Interestingly, M(NH3)4 (M = Co, Ni, and Cu) is a so-called solvated electron precursor and should be considered as a monocation M(NH3)4+ kernel in tight contact with one electron distributed over its periphery. This nearly free electron could be used to capture a CO2 molecule and engages in a reduction reaction. METHODS Geometry optimization of the stationary points on the potential energy surface was performed using density functional theory - CAM-B3LYP functional including the GD3BJ dispersion contribution - in combination with the 6-311 + + G(2d, 2p) basis set for all the atoms. All first-principles calculations were performed using the Gaussian 09 quantum chemical packages. The natural electron configuration of transition atom engaged in the compounds has been found using the natural bond orbital (NBO) method. We used the EDR (electron delocalization range) approach to analyze the structure of solvated electrons in real space. We also used the electron localization function (ELF) to measure the degree of electronic localization within a chemical compound. The EDR and ELF analyses are done using the TopMod and Multiwfn packages, respectively.
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Affiliation(s)
| | - Bruno Madebène
- Sorbonne Université CNRS, MONARIS, UMR8233, F-75005, Paris, France
| | - Bernard Silvi
- Sorbonne Université CNRS, LCT, UMR7616, F-75005, Paris, France
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2
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Alikhani ME, Janesko BG. A two-electron reducing reaction of CO 2 to an oxalate anion: a theoretical study of delocalized (presolvated) electrons in Al(CH 3) n(NH 3) m, n = 0-2 and m = 1-6, clusters. Phys Chem Chem Phys 2024; 26:7149-7156. [PMID: 38349025 DOI: 10.1039/d3cp06096a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Presolvated electron possibility in three oxidation states of aluminum - Al(0), Al(I), and Al(II) - has been theoretically investigated for the Al + 6NH3, Al(CH3) + 5NH3, and Al(CH3)2 + 4NH3 reactions. It has been shown that the metal center adopts a tetrahedral shape for its most stable geometric structure, irrespective of the degree of Al oxidation states. Using different analysis techniques (highest occupied molecular orbital shapes, spin density distributions, and electron delocalization ranges), we showed that presolvated (delocalized) electrons are only formed in the Al(CH3)2(NH3)p coordination complexes when 2 ≤ p ≤ 4. It has also been evidenced that these delocalized electrons being powerful reducing agents allowed two CO2 molecules to be captured and form an oxalate ion in close contact with the [Al2(CH3)2(CH2)2(NH3)4]2+ dication core.
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Affiliation(s)
| | - Benjamin G Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, 2800 S University Dr, Fort Worth, TX, USA.
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3
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Rumson AF, Johnson ER. Low thermal expansion of layered electrides predicted by density-functional theory. J Chem Phys 2023; 159:174701. [PMID: 37909456 DOI: 10.1063/5.0171959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 10/13/2023] [Indexed: 11/03/2023] Open
Abstract
Layered electrides are a unique class of materials with anionic electrons bound in interstitial regions between thin, positively charged atomic layers. While density-functional theory is the tool of choice for computational study of electrides, there has to date been no systematic comparison of density functionals or dispersion corrections for their accurate simulation. There has also been no research into the thermomechanical properties of layered electrides, with computational predictions considering only static lattices. In this work, we investigate the thermomechanical properties of five layered electrides using density-functional theory to evaluate the magnitude of thermal effects on their lattice constants and cell volumes. We also assess the accuracy of five popular dispersion corrections with both planewave and numerical atomic orbital calculations.
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Affiliation(s)
- Adrian F Rumson
- Department of Chemistry, Dalhousie University, 6274 Coburg Rd., Halifax, Nova Scotia B3H 4R2, Canada
| | - Erin R Johnson
- Department of Chemistry, Dalhousie University, 6274 Coburg Rd., Halifax, Nova Scotia B3H 4R2, Canada
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4
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Janesko BG. Replacing hybrid density functional theory: motivation and recent advances. Chem Soc Rev 2021; 50:8470-8495. [PMID: 34060549 DOI: 10.1039/d0cs01074j] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Density functional theory (DFT) is the most widely-used electronic structure approximation across chemistry, physics, and materials science. Every year, thousands of papers report hybrid DFT simulations of chemical structures, mechanisms, and spectra. Unfortunately, hybrid DFT's accuracy is ultimately limited by tradeoffs between over-delocalization and under-binding. This review summarizes these tradeoffs, and introduces six modern attempts to go beyond them while maintaining hybrid DFT's relatively low computational cost: DFT+U, self-interaction corrections, localized orbital scaling corrections, local hybrid functionals, real-space nondynamical correlation, and our rung-3.5 approach. The review concludes with practical suggestions for DFT users to identify and mitigate these tradeoffs' impact on their simulations.
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Affiliation(s)
- Benjamin G Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, 2800 S. University Dr, Fort Worth, TX 76129, USA.
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5
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Structure and spectrum of the hydrated electron. A combined quantum chemical statistical mechanical simulation. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Peters BK, Rodriguez KX, Reisberg SH, Beil SB, Hickey DP, Kawamata Y, Collins M, Starr J, Chen L, Udyavara S, Klunder K, Gorey TJ, Anderson SL, Neurock M, Minteer SD, Baran PS. Scalable and safe synthetic organic electroreduction inspired by Li-ion battery chemistry. Science 2019; 363:838-845. [PMID: 30792297 PMCID: PMC7001862 DOI: 10.1126/science.aav5606] [Citation(s) in RCA: 223] [Impact Index Per Article: 44.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 01/23/2019] [Indexed: 12/31/2022]
Abstract
Reductive electrosynthesis has faced long-standing challenges in applications to complex organic substrates at scale. Here, we show how decades of research in lithium-ion battery materials, electrolytes, and additives can serve as an inspiration for achieving practically scalable reductive electrosynthetic conditions for the Birch reduction. Specifically, we demonstrate that using a sacrificial anode material (magnesium or aluminum), combined with a cheap, nontoxic, and water-soluble proton source (dimethylurea), and an overcharge protectant inspired by battery technology [tris(pyrrolidino)phosphoramide] can allow for multigram-scale synthesis of pharmaceutically relevant building blocks. We show how these conditions have a very high level of functional-group tolerance relative to classical electrochemical and chemical dissolving-metal reductions. Finally, we demonstrate that the same electrochemical conditions can be applied to other dissolving metal-type reductive transformations, including McMurry couplings, reductive ketone deoxygenations, and epoxide openings.
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Affiliation(s)
- Byron K Peters
- Department of Chemistry, Scripps Research, La Jolla, CA 92037, USA
| | | | | | - Sebastian B Beil
- Department of Chemistry, Scripps Research, La Jolla, CA 92037, USA
| | - David P Hickey
- Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA
| | - Yu Kawamata
- Department of Chemistry, Scripps Research, La Jolla, CA 92037, USA
| | - Michael Collins
- Discovery Sciences, Medicine Design, Pfizer Global Research and Development, Groton, CT 06340, USA
| | - Jeremy Starr
- Discovery Sciences, Medicine Design, Pfizer Global Research and Development, Groton, CT 06340, USA
| | - Longrui Chen
- Asymchem Life Science (Tianjin), Tianjin Economic-Technological Development Zone, Tianjin 300457, China
| | - Sagar Udyavara
- Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455, USA
| | - Kevin Klunder
- Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA
| | - Timothy J Gorey
- Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA
| | - Scott L Anderson
- Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA
| | - Matthew Neurock
- Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455, USA.
| | - Shelley D Minteer
- Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA.
| | - Phil S Baran
- Department of Chemistry, Scripps Research, La Jolla, CA 92037, USA.
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7
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Janesko BG, Scalmani G, Frisch MJ. Density functionals for nondynamical correlation constructed from an upper bound to the exact exchange energy density. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1535673] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX, USA
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Affiliation(s)
- Stephen G. Dale
- Department of Chemistry, Dalhousie University, 6274 Coburg Road, P.O. Box 15000, B3H 4R2 Halifax, Nova Scotia, Canada
| | - Erin R. Johnson
- Department of Chemistry, Dalhousie University, 6274 Coburg Road, P.O. Box 15000, B3H 4R2 Halifax, Nova Scotia, Canada
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Rincon L, Javier Torres F, Becerra M, Liu S, Fritsch A, Almeida R. On the separation of the information content of the Fermi and Coulomb holes and their influence on the electronic properties of molecular systems. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1530462] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Luis Rincon
- Grupo de Química Computacional y Teórica (QCT-USFQ) and Instituto de Simulación Computacional (ISC-USFQ), Dept. de Ingeniería Química, Colegio de Ciencias e Ingeniería, Universidad San Francisco de Quito, Quito, Ecuador
- Departamento de Química, Facultad de Ciencias, Universidad de Los Andes (ULA), Mérida, Venezuela
| | - F. Javier Torres
- Grupo de Química Computacional y Teórica (QCT-USFQ) and Instituto de Simulación Computacional (ISC-USFQ), Dept. de Ingeniería Química, Colegio de Ciencias e Ingeniería, Universidad San Francisco de Quito, Quito, Ecuador
| | - Marcos Becerra
- Grupo de Química Computacional y Teórica (QCT-USFQ) and Instituto de Simulación Computacional (ISC-USFQ), Dept. de Ingeniería Química, Colegio de Ciencias e Ingeniería, Universidad San Francisco de Quito, Quito, Ecuador
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC, USA
| | - Alain Fritsch
- Institut des Sciences Molèculaires, Theoretical Chemistry & Modeling Group, Universitè Bordeaux, Talance, France
| | - Rafael Almeida
- Departamento de Química, Facultad de Ciencias, Universidad de Los Andes (ULA), Mérida, Venezuela
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Mehmood A, Jones SI, Tao P, Janesko BG. An Orbital-Overlap Complement to Ligand and Binding Site Electrostatic Potential Maps. J Chem Inf Model 2018; 58:1836-1846. [DOI: 10.1021/acs.jcim.8b00370] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Arshad Mehmood
- Department of Chemistry and Biochemistry, Texas Christian University, 2800 South University Drive, Fort Worth, Texas 76129, United States
| | - Stephanie I. Jones
- Department of Chemistry and Biochemistry, Texas Christian University, 2800 South University Drive, Fort Worth, Texas 76129, United States
| | - Peng Tao
- Department of Chemistry, Southern Methodist University, P.O. Box 750314, Dallas, Texas 75275, United States
| | - Benjamin G. Janesko
- Department of Chemistry and Biochemistry, Texas Christian University, 2800 South University Drive, Fort Worth, Texas 76129, United States
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11
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Voora VK, Kairalapova A, Sommerfeld T, Jordan KD. Theoretical approaches for treating non-valence correlation-bound anions. J Chem Phys 2017; 147:214114. [DOI: 10.1063/1.4991497] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Vamsee K. Voora
- Department of Chemistry, University of California, Irvine, California 92697, USA
| | - Arailym Kairalapova
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Thomas Sommerfeld
- Department of Chemistry and Physics, Southeastern Louisiana University, Hammond, Louisiana 70402, USA
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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12
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Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX, USA
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13
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Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, 2800 S. University Dr., Fort Worth, Texas 76129, USA
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14
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Janesko BG. Topological analysis of the electron delocalization range. J Comput Chem 2016; 37:1993-2005. [DOI: 10.1002/jcc.24421] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Revised: 04/01/2016] [Accepted: 05/17/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry & BiochemistryTexas Christian University2800 S. University DrFort Worth Texas76129
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15
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Janesko BG, Wiberg KB, Scalmani G, Frisch MJ. Electron Delocalization Range in Atoms and on Molecular Surfaces. J Chem Theory Comput 2016; 12:3185-94. [DOI: 10.1021/acs.jctc.6b00343] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | - Giovanni Scalmani
- Gaussian, Inc., 340
Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492, United States
| | - Michael J. Frisch
- Gaussian, Inc., 340
Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492, United States
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17
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Dale SG, Johnson ER. The explicit examination of the magnetic states of electrides. Phys Chem Chem Phys 2016; 18:27326-27335. [DOI: 10.1039/c6cp05345a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electrides are a unique class of ionic solids in which the anions are stoichiometrically replaced by electrons localised within the crystal voids. We present the first all electron magnetic state calculations for electrides and show the magnetic properties of these materials come from the localised electrons.
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Affiliation(s)
- Stephen G. Dale
- Chemistry and Chemical Biology
- School of Natural Sciences
- University of California
- Merced
- USA
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18
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Janesko BG, Scalmani G, Frisch MJ. Quantifying Electron Delocalization in Electrides. J Chem Theory Comput 2015; 12:79-91. [DOI: 10.1021/acs.jctc.5b00993] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Benjamin G. Janesko
- Department
of Chemistry, Texas Christian University, Fort Worth, Texas 76129, United States
| | - Giovanni Scalmani
- Gaussian,
Inc., 340 Quinnipiac Street Building
40, Wallingford, Connecticut 06492, United States
| | - Michael J. Frisch
- Gaussian,
Inc., 340 Quinnipiac Street Building
40, Wallingford, Connecticut 06492, United States
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Dale SG, Johnson ER. Counterintuitive electron localisation from density-functional theory with polarisable solvent models. J Chem Phys 2015; 143:184112. [DOI: 10.1063/1.4935177] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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