1
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Moid M, Finkelstein Y, Moreh R, Maiti PK. Anisotropy of the Proton Kinetic Energy as a Tool for Capturing Structural Transition in Water Confined in a Graphene Nanoslit Pore. J Phys Chem Lett 2022; 13:455-461. [PMID: 34995445 DOI: 10.1021/acs.jpclett.1c03086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The proton dynamics of a 2D water monolayer confined inside a graphene slit pore is studied in Cartesian and molecular frames of reference using molecular dynamics simulations. The vibrational density of states of the proton was calculated versus temperature and was further used to deduce the mean kinetic energy of the hydrogen atoms, Ke(H), in both frames of reference. The directional components of Ke(H) are in good agreement with experimental observations for bulk as well as nanoconfined water. Nonetheless, while in the molecular frame of reference the effect of temperature on the anisotropy ratios of Ke(H) (the ratio between its directional components) are practically invariant between the 2D and 3D cases, those in the Cartesian frame of reference reveal a rather notable reduction across 200 K, indicating the occurrence of an order-disorder transition. This result is further supported by the calculated entropy and enthalpy of the confined water molecules. Overall, it is shown that Ke(H) anisotropy ratios may serve as a valuable order parameter for detecting structural transformations in hydrogen bonds containing molecular systems.
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Affiliation(s)
- Mohd Moid
- Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India
| | | | - Raymond Moreh
- Physics Department, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Prabal K Maiti
- Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India
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2
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Drużbicki K, Gaboardi M, Fernandez-Alonso F. Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities. Polymers (Basel) 2021; 13:1440. [PMID: 33947108 PMCID: PMC8125526 DOI: 10.3390/polym13091440] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 04/27/2021] [Indexed: 12/19/2022] Open
Abstract
This work provides an up-to-date overview of recent developments in neutron spectroscopic techniques and associated computational tools to interrogate the structural properties and dynamical behavior of complex and disordered materials, with a focus on those of a soft and polymeric nature. These have and continue to pave the way for new scientific opportunities simply thought unthinkable not so long ago, and have particularly benefited from advances in high-resolution, broadband techniques spanning energy transfers from the meV to the eV. Topical areas include the identification and robust assignment of low-energy modes underpinning functionality in soft solids and supramolecular frameworks, or the quantification in the laboratory of hitherto unexplored nuclear quantum effects dictating thermodynamic properties. In addition to novel classes of materials, we also discuss recent discoveries around water and its phase diagram, which continue to surprise us. All throughout, emphasis is placed on linking these ongoing and exciting experimental and computational developments to specific scientific questions in the context of the discovery of new materials for sustainable technologies.
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Affiliation(s)
- Kacper Drużbicki
- Materials Physics Center, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, 20018 Donostia-San Sebastian, Spain;
- Polish Academy of Sciences, Center of Molecular and Macromolecular Studies, Sienkiewicza 112, 90-363 Lodz, Poland
| | - Mattia Gaboardi
- Elettra—Sincrotrone Trieste S.C.p.A., S.S. 14 km 163.5 in Area Science Park, 34149 Trieste, Italy;
| | - Felix Fernandez-Alonso
- Materials Physics Center, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, 20018 Donostia-San Sebastian, Spain;
- Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastian, Spain
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, UK
- IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, 48009 Bilbao, Spain
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3
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Ulpiani P, Romanelli G, Onorati D, Krzystyniak M, Andreani C, Senesi R. The effective isotropy of the hydrogen local potential in biphenyl and other hydrocarbons. J Chem Phys 2020; 153:234306. [PMID: 33353342 DOI: 10.1063/5.0029578] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present an experimental investigation of the hydrogen nuclear momentum distribution in biphenyl using deep inelastic neutron scattering. Our experimental results suggest that the local potential affecting hydrogen is both harmonic and isotropic within experimental uncertainties. This feature is interpreted as a consequence of the central limit theorem, whereby the three-dimensional momentum distribution is expected to become a purely Gaussian function as the number of independent vibrational modes in a system increases. We also performed ab initio phonon calculations on biphenyl and other saturated hydrocarbons, from methane to decane. From the results of the simulations, one can observe that the nuclear momentum distribution becomes more isotropic as the number of atoms and normal modes in the molecule increases. Moreover, the predicted theoretical anisotropy in biphenyl is clearly larger than in the experiment. The reason is that the total number of normal modes necessary to reproduce the experimental results is much larger than the number of normal modes encompassed by a single unit cell due to the presence of structural disorder and intermolecular interactions in the real crystal, as well as coupling of different normal modes. Finally, experimental data were collected, over a subset of detectors on the VESUVIO spectrometer at ISIS, with a novel setup to increase the count rate and signal-to-background ratio. We envision that such an optimized experimental setup can provide faster measurements and more stringent constraints for phonon calculations.
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Affiliation(s)
- Pierfrancesco Ulpiani
- Università degli Studi di Roma "Tor Vergata," Dipartimento di Scienze e Tecnologie Chimiche, Via della Ricerca Scientifica 1, Rome 00133, Italy
| | - Giovanni Romanelli
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11OQX, United Kingdom
| | - Dalila Onorati
- Università degli Studi di Roma "Tor Vergata," Dipartimento di Fisica and NAST Center, Via della Ricerca Scientifica 1, Rome 00133, Italy
| | - Matthew Krzystyniak
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11OQX, United Kingdom
| | - Carla Andreani
- Università degli Studi di Roma "Tor Vergata," Dipartimento di Fisica and NAST Center, Via della Ricerca Scientifica 1, Rome 00133, Italy
| | - Roberto Senesi
- Università degli Studi di Roma "Tor Vergata," Dipartimento di Fisica and NAST Center, Via della Ricerca Scientifica 1, Rome 00133, Italy
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Scatigno C, Romanelli G, Preziosi E, Zanetti M, Parker SF, Rudić S, Andreani C, Senesi R. A Python Algorithm to Analyze Inelastic Neutron Scattering Spectra Based on the y-Scale Formalism. J Chem Theory Comput 2020; 16:7671-7680. [PMID: 33198462 DOI: 10.1021/acs.jctc.0c00790] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This paper presents a Python-based algorithm, named INSCorNorm, to correct the inelastic neutron scattering (INS) spectra for both sample and container self-shielding and to normalize the experimental spectral intensity to an absolute physical scale (barn/energy unit) facilitating the comparison with computer simulations and interpretation. The algorithm is benchmarked against INS measurements of ZrH2 performed on the TOSCA spectrometer at the ISIS Facility. We also apply the algorithm to the INS spectra from l-lysine, a system of broad interest in biology and medicine, and we discuss how corrected INS data provide an experimental benchmark for theoretical calculations of nuclear anisotropic displacement parameters in molecular systems. The total neutron sample cross section to use for the self-shielding corrections is discussed, as well as the best approach to derive experimentally the cross section at the VESUVIO spectrometer, together with the experimental value of the hydrogen nuclear mean kinetic energy, ⟨Ek⟩. The algorithm is made available to the neutron user community within the MANTID software.
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Affiliation(s)
- Claudia Scatigno
- Dipartimento di Scienze Fisiche e Tecnologie della Materia, CNR, Piazzale Aldo Moro 7, 00185 Roma, Italy.,Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Via Panisperna 89a, 00184 Rome, Italy
| | - Giovanni Romanelli
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, U.K
| | - Enrico Preziosi
- Dipartimento di Fisica e NAST Centre, Università degli Studi di Roma "Tor Vergata", Via della Ricerca Scientifica 1, 00133 Rome, Italy
| | - Matteo Zanetti
- Dipartimento di Scienze Fisiche e Tecnologie della Materia, CNR, Piazzale Aldo Moro 7, 00185 Roma, Italy.,Advanced Nuclear Systems, SCK-CEN, Boeretang 200, 2400 Mol, Belgium
| | - Stewart F Parker
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, U.K
| | - Svemir Rudić
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, U.K
| | - Carla Andreani
- Dipartimento di Fisica e NAST Centre, Università degli Studi di Roma "Tor Vergata", Via della Ricerca Scientifica 1, 00133 Rome, Italy
| | - Roberto Senesi
- Dipartimento di Fisica e NAST Centre, Università degli Studi di Roma "Tor Vergata", Via della Ricerca Scientifica 1, 00133 Rome, Italy.,CNR-IPCF, Viale Ferdinando Stagno D'Alcontres, 98158 Messina, Italy
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5
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Andreani C, Romanelli G, Parmentier A, Senesi R, Kolesnikov AI, Ko HY, Calegari Andrade MF, Car R. Hydrogen Dynamics in Supercritical Water Probed by Neutron Scattering and Computer Simulations. J Phys Chem Lett 2020; 11:9461-9467. [PMID: 33108193 DOI: 10.1021/acs.jpclett.0c02547] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In this work, an investigation of supercritical water is presented combining inelastic and deep inelastic neutron scattering experiments and molecular dynamics simulations based on a machine-learned potential of ab initio quality. The local hydrogen dynamics is investigated at 250 bar and in the temperature range of 553-823 K, covering the evolution from subcritical liquid to supercritical gas-like water. The evolution of libration, bending, and stretching motions in the vibrational density of states is studied, analyzing the spectral features by a mode decomposition. Moreover, the hydrogen nuclear momentum distribution is measured, and its anisotropy is probed experimentally. It is shown that hydrogen bonds survive up to the higher temperatures investigated, and we discuss our results in the framework of the coupling between intramolecular modes and intermolecular librations. Results show that the local potential affecting hydrogen becomes less anisotropic within the molecular plane in the supercritical phase, and we attribute this result to the presence of more distorted hydrogen bonds.
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Affiliation(s)
- Carla Andreani
- Dipartimento di Fisica and NAST Centre, Università degli Studi di Roma Tor Vergata, Via della Ricerca Scientifica 1, 00133 Roma, Italy
- CNR-IPCF, Istituto per i Processi Chimico-Fisici del CNR di Messina, Viale F. Stagno dAlcontres 37, 98158 Messina, Italy
| | - Giovanni Romanelli
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, United Kingdom
| | | | - Roberto Senesi
- Dipartimento di Fisica and NAST Centre, Università degli Studi di Roma Tor Vergata, Via della Ricerca Scientifica 1, 00133 Roma, Italy
- CNR-IPCF, Istituto per i Processi Chimico-Fisici del CNR di Messina, Viale F. Stagno dAlcontres 37, 98158 Messina, Italy
| | - Alexander I Kolesnikov
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Hsin-Yu Ko
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
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Bocedi A, Romanelli G, Andreani C, Senesi R. Hydrogen nuclear mean kinetic energy in water down the Mariana Trench: Competition of pressure and salinity. J Chem Phys 2020; 153:134306. [PMID: 33032407 DOI: 10.1063/5.0021926] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The Mariana Trench is one of the most famous and extreme environments on our planet. We report experimental values of the hydrogen nuclear mean kinetic energy in water samples at the same physical and chemical conditions than in the Challenger Deep within the Mariana Trench: a pressure of 1092 bars, a temperature of 1 °C, and a salinity of 35 g of salt per kg of water. Results were obtained by deep inelastic neutron scattering at the VESUVIO spectrometer at ISIS. We find that the effect of pressure is to increase the hydrogen nuclear mean kinetic energy with respect to ambient conditions, while ions in the solution have the opposite effect. These results confirm the recent state-of-the-art simulations of the nuclear hydrogen dynamics in water. The changes in the nuclear mean kinetic energy likely correspond to different isotopic fractionation values in the Challenger Deep compared to standard sea water.
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Affiliation(s)
- Alessio Bocedi
- Università degli Studi di Roma "Tor Vergata", Dipartimento di Scienze e Tecnologie Chimiche, Via della Ricerca Scientifica 1, Rome 00133, Italy
| | - Giovanni Romanelli
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11OQX, United Kingdom
| | - Carla Andreani
- Università degli Studi di Roma "Tor Vergata", Dipartimento di Fisica and NAST Center, Via della Ricerca Scientifica 1, Rome 00133, Italy
| | - Roberto Senesi
- Università degli Studi di Roma "Tor Vergata", Dipartimento di Fisica and NAST Center, Via della Ricerca Scientifica 1, Rome 00133, Italy
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Moid M, Finkelstein Y, Moreh R, Maiti PK. Microscopic Study of Proton Kinetic Energy Anomaly for Nanoconfined Water. J Phys Chem B 2019; 124:190-198. [DOI: 10.1021/acs.jpcb.9b08667] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mohd Moid
- Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India
| | | | - Raymond Moreh
- Physics Department, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Prabal K. Maiti
- Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore 560012, India
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Krzystyniak M, Romanelli G, Fernandez-Alonso F. Non-destructive quantitation of hydrogen via mass-resolved neutron spectroscopy. Analyst 2019; 144:3936-3941. [PMID: 31041932 DOI: 10.1039/c8an01729h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This work introduces the use of mass-selective neutron spectroscopy as an analytical tool for the quantitative and non-destructive detection of hydrogen in bulk media. To this end, systematic measurements have been performed on a series of polyethylene standards of known thickness and density, in order to establish optimal data-acquisition protocols as well as associated limits of detection and quantitation. From this analysis, we conclude that state-of-the-art epithermal-neutron instrumentation enables the detection of aeral molar densities of bulk hydrogen in the μmol cm-2 range. We also discuss potential improvements on the horizon, with a view to broadening the scope of the technique across chemistry, materials science, and engineering.
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Affiliation(s)
- Maciej Krzystyniak
- ISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, UK.
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9
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Kundu A, Verma PK, Cho M. Water Structure and Dynamics in the Stern Layer of Micelles: Femtosecond Mid-Infrared Pump-Probe Spectroscopy Study. J Phys Chem B 2019; 123:5238-5245. [PMID: 31145621 DOI: 10.1021/acs.jpcb.9b03183] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Molecular-level understanding of the water structure and dynamics in the Stern layer of micelles is important to elucidate the active role of water in biological processes on membrane surfaces. Micelles and reverse micelles are considered to be excellent membrane model systems. Here, to address the question of whether or not the spatial confinement effect on water in reverse micelles and nanometric water pool systems plays a role in modulating water dynamics, we consider four different aqueous micelle solutions and study the water dynamics in the Stern layer of micelles using a femtosecond mid-infrared pump-probe spectroscopy technique. Vibrational energy relaxation and rotational dynamics of the O?D stretch mode of HDO and the azido stretch mode of hydrazoic acid are critically dependent on the charge, polarity, and chemical structure of the surfactant head group. In particular, water molecules in the Stern layer of micelles, which are not in spatially confined environments, are notably different from those in bulk water. This finding clearly indicates that changes in the vibrational and rotational dynamics of water molecules, even in spatially confined systems, are mainly induced by surface effects instead of spatial confinement effects. We believe that the present experimental results are of importance for understanding water-involved biochemical processes on biological membranes.
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Affiliation(s)
- Achintya Kundu
- Center for Molecular Spectroscopy and Dynamics , Institute for Basic Science (IBS) , Seoul 02841 , Republic of Korea.,Department of Chemistry , Korea University , Seoul 02841 , Republic of Korea
| | - Pramod Kumar Verma
- Center for Molecular Spectroscopy and Dynamics , Institute for Basic Science (IBS) , Seoul 02841 , Republic of Korea.,Department of Chemistry , Korea University , Seoul 02841 , Republic of Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics , Institute for Basic Science (IBS) , Seoul 02841 , Republic of Korea.,Department of Chemistry , Korea University , Seoul 02841 , Republic of Korea
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10
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Atomic Quantum Dynamics in Materials Research. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/b978-0-12-805324-9.00007-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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