1
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Bernard J, Martin S, Al-Mogeeth A, Joblin C, Ji M, Zettergren H, Cederquist H, Stockett MH, Indrajith S, Dontot L, Spiegelman F, Toublanc D, Rapacioli M. Near-infrared absorption and radiative cooling of naphthalene dimers (C 10H 8) 2. Phys Chem Chem Phys 2024; 26:18571-18583. [PMID: 38949429 DOI: 10.1039/d4cp01200c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
Abstract
The radiative cooling of naphthalene dimer cations, (C10H8)2+ was studied experimentally through action spectroscopy using two different electrostatic ion-beam storage rings, DESIREE in Stockholm and Mini-Ring in Lyon. The spectral characteristics of the charge resonance (CR) band were observed to vary significantly with a storage time of up to 30 seconds in DESIREE. In particular, the position of the CR band shifts to the blue, with specific times (inverse of rates) of 0.64 s and 8.0 s in the 0-5 s and 5-30 s storage time ranges, respectively. These long-time scales indicate that the internal energy distribution of the stored ions evolves by vibrational radiative cooling, which is consistent with the absence of fast radiative cooling via recurrent fluorescence for (C10H8)2+. Density functional based tight binding calculations with local excitations and configuration interactions (DFTB-EXCI) were used to simulate the absorption spectrum for ion temperatures between 10 and 500 K. The evolution of the bandwidth and position with temperature is in qualitative agreement with the experimental findings. Furthermore, these calculations yielded linear temperature dependencies for both the shift and the broadening. Combining the relationship between the CR band position and the ion temperature with the results of the statistical model, we demonstrate that the observed blue shift can be used to determine the radiative cooling rate of (C10H8)2+.
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Affiliation(s)
- Jérôme Bernard
- Institut Lumière Matière (iLM), UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne, France.
| | - Serge Martin
- Institut Lumière Matière (iLM), UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne, France.
| | - Abdulaziz Al-Mogeeth
- Institut Lumière Matière (iLM), UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne, France.
| | - Christine Joblin
- Institut de Recherche en Astrophysique et Planétologie (IRAP), UMR5277, Université Toulouse III - Paul Sabatier, CNRS, CNES, 9 Av. du Colonel Roche, 31028 Toulouse Cedex 4, France
| | - MingChao Ji
- Department of Physics, Stockholm University, Roslagstullsbacken 21, SE-106 91, Stockholm, Sweden
| | - Henning Zettergren
- Department of Physics, Stockholm University, Roslagstullsbacken 21, SE-106 91, Stockholm, Sweden
| | - Henrik Cederquist
- Department of Physics, Stockholm University, Roslagstullsbacken 21, SE-106 91, Stockholm, Sweden
| | - Mark H Stockett
- Department of Physics, Stockholm University, Roslagstullsbacken 21, SE-106 91, Stockholm, Sweden
| | - Suvasthika Indrajith
- Institut Lumière Matière (iLM), UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne, France.
- Department of Physics, Stockholm University, Roslagstullsbacken 21, SE-106 91, Stockholm, Sweden
| | - Léo Dontot
- CIMAP, Unité Mixte CEA-CNRS-ENSICAEN-UCBN 6252, BP 5133, F-14070 Caen, Cedex 05, France
| | - Fernand Spiegelman
- Laboratoire de Chimie et Physique Quantiques (LCPQ)/Institut FeRMI, UMR5626, Université Toulouse III - Paul Sabatier and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Dominique Toublanc
- Laboratoire Collisions Agrégats Réactivité (LCAR)/Institut FeRMI, UMR5589, Université Toulouse III - Paul Sabatier and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques (LCPQ)/Institut FeRMI, UMR5626, Université Toulouse III - Paul Sabatier and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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2
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Domingos SR, Tikhonov DS, Steber AL, Eschenbach P, Gruet S, Hrodmarsson HR, Martin K, Garcia GA, Nahon L, Neugebauer J, Avarvari N, Schnell M. Evolution of the ionisation energy with the stepwise growth of chiral clusters of [4]helicene. Nat Commun 2024; 15:4928. [PMID: 38858352 PMCID: PMC11164862 DOI: 10.1038/s41467-024-48778-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 05/13/2024] [Indexed: 06/12/2024] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are widely established as ubiquitous in the interstellar medium (ISM), but considering their prevalence in harsh vacuum environments, the role of ionisation in the formation of PAH clusters is poorly understood, particularly if a chirality-dependent aggregation route is considered. Here we report on photoelectron spectroscopy experiments on [4]helicene clusters performed with a vacuum ultraviolet synchrotron beamline. Aggregates (up to the heptamer) of [4]helicene, the smallest PAH with helical chirality, were produced and investigated with a combined experimental and theoretical approach using several state-of-the-art quantum-chemical methodologies. The ionisation onsets are extracted for each cluster size from the mass-selected photoelectron spectra and compared with calculations of vertical ionisation energies. We explore the complex aggregation topologies emerging from the multitude of isomers formed through clustering of P and M, the two enantiomers of [4]helicene. The very satisfactory benchmarking between experimental ionisation onsets vs. predicted ionisation energies allows the identification of theoretically predicted potential aggregation motifs and corresponding energetic ordering of chiral clusters. Our structural models suggest that a homochiral aggregation route is energetically favoured over heterochiral arrangements with increasing cluster size, hinting at potential symmetry breaking in PAH cluster formation at the scale of small grains.
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Affiliation(s)
- Sérgio R Domingos
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
- CFisUC, Department of Physics, University of Coimbra, 3004-516, Coimbra, Portugal.
| | - Denis S Tikhonov
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
| | - Amanda L Steber
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
- Department of Physical Chemistry, Faculty of Science, University of Valladolid, 47011, Valladolid, Spain.
| | - Patrick Eschenbach
- Organisch-Chemisches Institut, University of Münster, 48149, Münster, Germany
- Center for Multiscale Theory and Computation (CMTC), University of Münster, 48149, Münster, Germany
| | - Sebastien Gruet
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany
| | - Helgi R Hrodmarsson
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif sur Yvette, Cedex, France
- LISA UMR 7583 Université Paris-Est Créteil and Université de Paris, Institut Pierre et Simon Laplace, 61 Avenue du Général de Gaulle, 94010, Créteil, France
| | - Kévin Martin
- Univ Angers, CNRS, MOLTECH-Anjou, SFR MATRIX, 49000, Angers, France
| | - Gustavo A Garcia
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif sur Yvette, Cedex, France
| | - Laurent Nahon
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif sur Yvette, Cedex, France
| | - Johannes Neugebauer
- Organisch-Chemisches Institut, University of Münster, 48149, Münster, Germany
- Center for Multiscale Theory and Computation (CMTC), University of Münster, 48149, Münster, Germany
| | - Narcis Avarvari
- Univ Angers, CNRS, MOLTECH-Anjou, SFR MATRIX, 49000, Angers, France
| | - Melanie Schnell
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
- Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Max-Eyth-Str. 1, 24118, Kiel, Germany.
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3
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Rapacioli M, Buey MY, Spiegelman F. Addressing electronic and dynamical evolution of molecules and molecular clusters: DFTB simulations of energy relaxation in polycyclic aromatic hydrocarbons. Phys Chem Chem Phys 2024; 26:1499-1515. [PMID: 37933901 PMCID: PMC10793726 DOI: 10.1039/d3cp02852f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 10/17/2023] [Indexed: 11/08/2023]
Abstract
We present a review of the capabilities of the density functional based Tight Binding (DFTB) scheme to address the electronic relaxation and dynamical evolution of molecules and molecular clusters following energy deposition via either collision or photoabsorption. The basics and extensions of DFTB for addressing these systems and in particular their electronic states and their dynamical evolution are reviewed. Applications to PAH molecules and clusters, carbonaceous systems of major interest in astrochemical/astrophysical context, are reported. A variety of processes are examined and discussed such as collisional hydrogenation, fast collisional processes and induced electronic and charge dynamics, collision-induced fragmentation, photo-induced fragmentation, relaxation in high electronic states, electronic-to-vibrational energy conversion and statistical versus non-statistical fragmentation. This review illustrates how simulations may help to unravel different relaxation mechanisms depending on various factors such as the system size, specific electronic structure or excitation conditions, in close connection with experiments.
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Affiliation(s)
- Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantique (LCPQ/FERMI), UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France.
| | - Maysa Yusef Buey
- Laboratoire de Chimie et Physique Quantique (LCPQ/FERMI), UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France.
| | - Fernand Spiegelman
- Laboratoire de Chimie et Physique Quantique (LCPQ/FERMI), UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France.
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Leboucher H, Simon A, Rapacioli M. Structures and stabilities of PAH clusters solvated by water aggregates: The case of the pyrene dimer. J Chem Phys 2023; 158:114308. [PMID: 36948831 DOI: 10.1063/5.0139482] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023] Open
Abstract
Although clusters made of polycyclic aromatic hydrocarbon and water monomers are relevant objects in both atmospheric and astrophysical science, little is known about their energetic and structural properties. In this work, we perform global explorations of the potential energy landscapes of neutral clusters made of two pyrene units and one to ten water molecules using a density-functional-based tight-binding (DFTB) potential followed by local optimizations at the density-functional theory level. We discuss the binding energies with respect to various dissociation channels. It shows that cohesion energies of the water clusters interacting with a pyrene dimer are larger than those of the pure water clusters, reaching for the largest clusters an asymptotic limit similar to that of pure water clusters and that, although the hexamer and octamer can be considered magic numbers for isolated water clusters, it is not the case anymore when they are interacting with a pyrene dimer. Ionization potentials are also computed by making use of the configuration interaction extension of DFTB, and we show that in cations, the charge is mostly carried by the pyrene molecules.
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Affiliation(s)
- H Leboucher
- Laboratoire de Chimie et Physique Quantiques LCPQ/FERMI, UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - A Simon
- Laboratoire de Chimie et Physique Quantiques LCPQ/FERMI, UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - M Rapacioli
- Laboratoire de Chimie et Physique Quantiques LCPQ/FERMI, UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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5
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Garcia GA, Dontot L, Rapacioli M, Spiegelman F, Bréchignac P, Nahon L, Joblin C. Electronic effects in the dissociative ionisation of pyrene clusters. Phys Chem Chem Phys 2023; 25:4501-4510. [PMID: 36722859 DOI: 10.1039/d2cp05679h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We present a combined experimental and theoretical study on the dissociative ionisation of clusters of pyrene. We measured the experimental appearance energies in the photon energy range 7.2-12.0 eV of the fragments formed from neutral monomer loss for clusters up to the hexamer. The results obtained show a deviation from statistical dissociation. From electronic structure calculations, we suggest that the role of excited states must be considered in the interpretation of experimental results, even in these relatively large systems. Non-statistical effects in the dissociative ionization process of polycyclic aromatic hydrocarbon (PAH) clusters may have an impact on the assessment of mechanisms determining the stability of these clusters in astrophysical environments.
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Affiliation(s)
- Gustavo A Garcia
- Synchrotron SOLEIL, L'Orme des Merisiers, Départamentale 128, 91190 Saint Aubin, France.
| | - Léo Dontot
- Institut de Recherche en Astrophysique et Planétologie, Université de Toulouse III - Paul Sabatier, CNRS, CNES, 9 avenue du Colonel Roche, BP 44346, F-31028 Toulouse, France.,Laboratoire de Chimie et Physique Quantiques, FERMI, Université de Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques, FERMI, Université de Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Fernand Spiegelman
- Laboratoire de Chimie et Physique Quantiques, FERMI, Université de Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Philippe Bréchignac
- Institut des Sciences Moléculaires d'Orsay, CNRS, Université Paris-Saclay, F-91405 Orsay, France
| | - Laurent Nahon
- Synchrotron SOLEIL, L'Orme des Merisiers, Départamentale 128, 91190 Saint Aubin, France.
| | - Christine Joblin
- Institut de Recherche en Astrophysique et Planétologie, Université de Toulouse III - Paul Sabatier, CNRS, CNES, 9 avenue du Colonel Roche, BP 44346, F-31028 Toulouse, France
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6
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Zamith S, Kassem A, L'Hermite JM, Joblin C. Water Attachment onto Size-Selected Cationic Pyrene Clusters. J Phys Chem A 2022; 126:3696-3707. [PMID: 35670699 DOI: 10.1021/acs.jpca.2c02195] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report measurements of the attachment rates of water molecules onto mass-selected cationic pyrene clusters for size from n = 4 to 13 pyrene units and for different collision energies. Comparison of the attachment rates with the collision rates measured in collision-induced dissociation experiments provides access to the values of the sticking coefficient. The strong dependence of the attachment rates on size and collision energy is rationalized through a model in which we use a Langevin-type collision rate and adjust on experimental data the statistical dissociation rate of the water molecule from the cluster after attachment. This allows us to extrapolate our results to the conditions of isolation and long time scales encountered in astrophysical environments.
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Affiliation(s)
- Sébastien Zamith
- Laboratoire Collision Agrégats Réactivité (LCAR/IRSAMC), UMR5589, Université de Toulouse III - Paul Sabatier and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Ali Kassem
- Laboratoire Collision Agrégats Réactivité (LCAR/IRSAMC), UMR5589, Université de Toulouse III - Paul Sabatier and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France.,Institut de Recherche en Astrophysique et Planétologie (IRAP), UMR5277, Université de Toulouse III - Paul Sabatier, CNRS, CNES, 9 avenue du Colonel Roche, F-31028 Toulouse, France
| | - Jean-Marc L'Hermite
- Laboratoire Collision Agrégats Réactivité (LCAR/IRSAMC), UMR5589, Université de Toulouse III - Paul Sabatier and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Christine Joblin
- Institut de Recherche en Astrophysique et Planétologie (IRAP), UMR5277, Université de Toulouse III - Paul Sabatier, CNRS, CNES, 9 avenue du Colonel Roche, F-31028 Toulouse, France
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7
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Preface to the special collection in honor of Fernand Spiegelman. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02826-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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8
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Bernard J, Al-Mogeeth A, Martin S, Montagne G, Joblin C, Dontot L, Spiegelman F, Rapacioli M. Experimental and theoretical study of photo-dissociation spectroscopy of pyrene dimer radical cations stored in a compact electrostatic ion storage ring. Phys Chem Chem Phys 2021; 23:6017-6028. [PMID: 33667290 DOI: 10.1039/d0cp05779g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper, we present an experimental and theoretical study of the photo-dissociation of free-flying dimer radical cations of pyrene (C16H10)2+. Experimentally, the dimers were produced in the plasma of an electron cyclotron resonance ion source and stored in an electrostatic ion storage ring, the Mini-Ring for times up to 10 ms and the photo-dissociation spectrum was recorded in the 400 to 2000 nm range. Two broad absorption bands were observed at 550 (2.25 eV) and 1560 nm (0.79 eV), respectively. Theoretical simulations of the absorption spectrum as a function of the temperature were performed using the Density Functional based Tight Binding approach within the Extended Configuration Interaction scheme (DFTB-EXCI) to determine the electronic structure. The simulation involved all excited electronic states correlated asymptotically with the five lowest excited states D1-D5 of the monomer cation and a Monte Carlo exploration of the electronic ground state potential energy surface. The simulations exhibit three major bands at 1.0, 2.1 and 2.8 eV respectively. They allow assigning the experimental band at 1560 nm to absorption by the charge resonance (CR) excited state correlated with the ground state of the monomer D0. The band at 550 nm is tentatively attributed to dimer states correlated with excited states D2-D4, in the monomer cation. Simulations also show that the CR band broadens and shifts towards longer wavelength with increasing temperature. It results from the dependence on the geometry of the energy gap between the ground state and the lowest excited state. The comparison of the experimental spectrum with theoretical spectra at various temperatures allows us to estimate the temperature of the stored (C16H10)2+ in the 300-400 K range, which is also in line with the expected temperatures of the ions deduced from the analysis of the natural decay curve.
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Affiliation(s)
- J Bernard
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne cedex, France.
| | - A Al-Mogeeth
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne cedex, France.
| | - S Martin
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne cedex, France.
| | - G Montagne
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne cedex, France.
| | - C Joblin
- Institut de Recherche en Astrophysique et Planétologie, Université de Toulouse (UPS), CNRS, CNES, 9 Avenue du Colonel Roche, F-31028 Toulouse, France
| | - L Dontot
- Laboratoire de Chimie et de Physique Quantiques (LCPQ), IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - F Spiegelman
- Laboratoire de Chimie et de Physique Quantiques (LCPQ), IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - M Rapacioli
- Laboratoire de Chimie et de Physique Quantiques (LCPQ), IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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10
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Cuny J, Cerda Calatayud J, Ansari N, Hassanali AA, Rapacioli M, Simon A. Simulation of Liquids with the Tight-Binding Density-Functional Approach and Improved Atomic Charges. J Phys Chem B 2020; 124:7421-7432. [PMID: 32696649 DOI: 10.1021/acs.jpcb.0c04167] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Theoretical description of liquids, especially liquid water, is an ongoing subject with important implications in various domains such as homogeneous catalysis; solvation of molecular, ionic, and biomolecular species; and reactivity. Various formalisms exist to describe liquids, each one displaying its own balance between accuracy and computational cost that defines its range of applications. The present article revisits the ability of the density-functional-based tight-binding (SCC-DFTB) approach to model liquids by focusing on liquid water and liquid benzene under ambient conditions. To do so, we benchmark a recent correction for the SCC-DFTB atomic charges that allows for a drastic improvement of the pair radial distribution functions of liquid water as compared to both experimental data and density-functional theory results performed in the generalized-gradient approximation. We also report the coupling of the deMonNano and i-PI codes to perform path-integral molecular dynamics. This allows us to rationalize the impact of nuclear quantum effects on the SCC-DFTB description of liquid water. This study evidences the rather good ability of SCC-DFTB to describe liquid water and liquid benzene. As the first example of application, we also present results for a benzene molecule solvated in water with the perspectives of further studies devoted to solvent/water interfaces.
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Affiliation(s)
- Jérôme Cuny
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Jesus Cerda Calatayud
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Narjes Ansari
- The Abdus Salam International Center for Theoretical Physics, Condensed Matter and Statistical Physics Section, Strada Costiera 11, 34151 Trieste, Italy.,Department of Chemistry and Applied Biosciences, ETH Zurich, 3 c/o USI Campus, Via Giuseppe Buffi13, 6900 Lugano, Switzerland.,Facoltà di informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, CH-6900 Lugano, Switzerland
| | - Ali A Hassanali
- The Abdus Salam International Center for Theoretical Physics, Condensed Matter and Statistical Physics Section, Strada Costiera 11, 34151 Trieste, Italy
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Aude Simon
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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11
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Spiegelman F, Tarrat N, Cuny J, Dontot L, Posenitskiy E, Martí C, Simon A, Rapacioli M. Density-functional tight-binding: basic concepts and applications to molecules and clusters. ADVANCES IN PHYSICS: X 2020; 5:1710252. [PMID: 33154977 PMCID: PMC7116320 DOI: 10.1080/23746149.2019.1710252] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 12/19/2019] [Indexed: 06/10/2023] Open
Abstract
The scope of this article is to present an overview of the Density Functional based Tight Binding (DFTB) method and its applications. The paper introduces the basics of DFTB and its standard formulation up to second order. It also addresses methodological developments such as third order expansion, inclusion of non-covalent interactions, schemes to solve the self-interaction error, implementation of long-range short-range separation, treatment of excited states via the time-dependent DFTB scheme, inclusion of DFTB in hybrid high-level/low level schemes (DFT/DFTB or DFTB/MM), fragment decomposition of large systems, large scale potential energy landscape exploration with molecular dynamics in ground or excited states, non-adiabatic dynamics. A number of applications are reviewed, focusing on -(i)- the variety of systems that have been studied such as small molecules, large molecules and biomolecules, bare orfunctionalized clusters, supported or embedded systems, and -(ii)- properties and processes, such as vibrational spectroscopy, collisions, fragmentation, thermodynamics or non-adiabatic dynamics. Finally outlines and perspectives are given.
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Affiliation(s)
- Fernand Spiegelman
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Nathalie Tarrat
- CEMES, Université de Toulouse (UPS), CNRS, UPR8011, Toulouse, Toulouse, France
| | - Jérôme Cuny
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Leo Dontot
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Evgeny Posenitskiy
- Laboratoire Collisions Agrégats et Réactivité LCAR/IRSAMC, UMR5589, Université de Toulouse (UPS) and CNRS, Toulouse, France
| | - Carles Martí
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
- Laboratoire de Chimie, UMR5182, Ecole Normale Supérieure de Lyon, Université de Lyon and CNRS, Lyon, France
| | - Aude Simon
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
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12
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Dontot L, Spiegelman F, Rapacioli M. Structures and Energetics of Neutral and Cationic Pyrene Clusters. J Phys Chem A 2019; 123:9531-9543. [PMID: 31589446 PMCID: PMC6917508 DOI: 10.1021/acs.jpca.9b07007] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The low energy structures of neutral and cationic pyrene clusters containing up to seven molecules are searched through a global exploration scheme combining parallel tempering Monte Carlo algorithm and local quenches. The potential energies are computed at the density functional based tight binding level for neutrals and configuration interaction density functional based tight binding for cations in order to treat properly the charge resonance. New simplified versions of these schemes are also presented and used during the global exploration. Neutral clusters are shown to be made of compact assemblies of sub-blocs containing up to three units whereas cations present a charged dimer or trimer core surrounded by neutral units. The structural features of the clusters are analyzed and correlated for the cation with the charge distribution. The stability of clusters is also discussed in terms of cohesive and evaporation energies. Adiabatic and vertical ionization potentials are also discussed.
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Affiliation(s)
- Léo Dontot
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Fernand Spiegelman
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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Bernard J, Al-Mogeeth A, Allouche AR, Chen L, Montagne G, Martin S. Photo-dissociation of naphthalene dimer cations stored in a compact electrostatic ion storage ring. J Chem Phys 2019; 150:054303. [PMID: 30736693 DOI: 10.1063/1.5055939] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Naphthalene dimer cations [C10H8]2 + have been produced by using an electron cyclotron resonance plasma ion source and stored in a compact electrostatic ion storage ring. We show that the radiative cooling of these cations is much slower than the isolated monomer naphthalene cations. We also report on photo-dissociation studies in the gas phase of naphthalene dimer cations at high internal energy. The dissociation energy is estimated to 0.5 eV in close agreement with previous measurements but a factor of 2 smaller than recent (density functional theory (DFT) and ab initio) theoretical studies. As uncertainties on theory as well as on the experiment cannot be as large as this difference, we conclude that this discrepancy may be due to temperature effects with possible isomerization. As an interpretation of the photo-dissociation spectrum of naphthalene dimer cations, we propose a tentative simple analytical model based on effective Morse potentials. These effective potentials are expected to "average" temperature effects that would apparently result in a smaller energy difference between the fundamental and dissociation states due to the twisting vibration modes of the naphthalene dimer cations.
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Affiliation(s)
- J Bernard
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex 69622, France
| | - A Al-Mogeeth
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex 69622, France
| | - A-R Allouche
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex 69622, France
| | - L Chen
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex 69622, France
| | - G Montagne
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex 69622, France
| | - S Martin
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, Villeurbanne Cedex 69622, France
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Cuny J, Tarrat N, Spiegelman F, Huguenot A, Rapacioli M. Density-functional tight-binding approach for metal clusters, nanoparticles, surfaces and bulk: application to silver and gold. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:303001. [PMID: 29916820 DOI: 10.1088/1361-648x/aacd6c] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Density-functional based tight-binding (DFTB) is an efficient quantum mechanical method that can describe a variety of systems, going from organic and inorganic compounds to metallic and hybrid materials. The present topical review addresses the ability and performance of DFTB to investigate energetic, structural, spectroscopic and dynamical properties of gold and silver materials. After a brief overview of the theoretical basis of DFTB, its parametrization and its transferability, we report its past and recent applications to gold and silver systems, including small clusters, nanoparticles, bulk and surfaces, bare and interacting with various organic and inorganic compounds. The range of applications covered by those studies goes from plasmonics and molecular electronics, to energy conversion and surface chemistry. Finally, perspectives of DFTB in the field of gold and silver surfaces and NPs are outlined.
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Affiliation(s)
- Jérôme Cuny
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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15
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Joblin C, Dontot L, Garcia GA, Spiegelman F, Rapacioli M, Nahon L, Parneix P, Pino T, Bréchignac P. Size Effect in the Ionization Energy of PAH Clusters. J Phys Chem Lett 2017; 8:3697-3702. [PMID: 28742357 PMCID: PMC5545758 DOI: 10.1021/acs.jpclett.7b01546] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2017] [Accepted: 07/25/2017] [Indexed: 05/12/2023]
Abstract
We report the first experimental measurement of the near-threshold photoionization spectra of polycyclic aromatic hydrocarbon clusters made of pyrene C16H10 and coronene C24H12, obtained using imaging photoelectron-photoion coincidence spectrometry with a VUV synchrotron beamline. The experimental results of the ionization energy are compared to calculated ones obtained from simulations using dedicated electronic structure treatment for large ionized molecular clusters. Experiment and theory consistently find a decrease of the ionization energy with cluster size. The inclusion of temperature effects in the simulations leads to a lowering of this energy and to quantitative agreement with the experiment. In the case of pyrene, both theory and experiment show a discontinuity in the IE trend for the hexamer. This work demonstrates the ability of the models to describe the electronic structure of PAH clusters and suggests that these species are ionized in astronomical environments where they are thought to be present.
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Affiliation(s)
- C. Joblin
- IRAP, Université de
Toulouse, CNRS, UPS, CNES, 9 Av. du Colonel Roche, 31028 Toulouse Cedex 4, France
| | - L. Dontot
- IRAP, Université de
Toulouse, CNRS, UPS, CNES, 9 Av. du Colonel Roche, 31028 Toulouse Cedex 4, France
| | - G. A. Garcia
- Synchrotron
SOLEIL, L’Orme
des Merisiers, 91192 Gif sur Yvette Cedex, France
| | - F. Spiegelman
- Laboratoire
de Chimie et Physique Quantiques LCPQ/IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, 31062 Toulouse, France
| | - M. Rapacioli
- Laboratoire
de Chimie et Physique Quantiques LCPQ/IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, 31062 Toulouse, France
| | - L. Nahon
- Synchrotron
SOLEIL, L’Orme
des Merisiers, 91192 Gif sur Yvette Cedex, France
| | - P. Parneix
- Institut
des Sciences Moléculaires d’Orsay, CNRS, Univ Paris
Sud, Université Paris-Saclay, F-91405 Orsay, France
| | - T. Pino
- Institut
des Sciences Moléculaires d’Orsay, CNRS, Univ Paris
Sud, Université Paris-Saclay, F-91405 Orsay, France
| | - P. Bréchignac
- Institut
des Sciences Moléculaires d’Orsay, CNRS, Univ Paris
Sud, Université Paris-Saclay, F-91405 Orsay, France
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Tarrat N, Rapacioli M, Cuny J, Morillo J, Heully JL, Spiegelman F. Global optimization of neutral and charged 20- and 55-atom silver and gold clusters at the DFTB level. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2017.01.022] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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17
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Oliveira LFL, Tarrat N, Cuny J, Morillo J, Lemoine D, Spiegelman F, Rapacioli M. Benchmarking Density Functional Based Tight-Binding for Silver and Gold Materials: From Small Clusters to Bulk. J Phys Chem A 2016; 120:8469-8483. [DOI: 10.1021/acs.jpca.6b09292] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Nathalie Tarrat
- CEMES CNRS UPR 8011, 29 rue Jeanne Marvig, BP 94347, 31055 Toulouse Cedex 4, France
| | | | - Joseph Morillo
- CEMES CNRS UPR 8011, 29 rue Jeanne Marvig, BP 94347, 31055 Toulouse Cedex 4, France
- Université de Toulouse (UPS), 118
Route de Narbonne, F-31062 Toulouse Cedex 9, France
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