Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br)

1-(Chloromethyl)-3-nitrobenzene, C₇H₆NClO₂, and 1-(bromomethyl)-3-nitrobenzene, C₇H₆NBrO₂, were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomorphous, and theory predicted similar ADPs for both. In-house diffraction experiments with Mo Kα radiation were in apparent contradiction to this theoretical result, with experimentally observed ADPs significantly larger for the bromo derivative. In contrast, the experimental and theoretical ADPs for the lighter congener matched reasonably well. As all usual quality indicators for both sets of experimental data were satisfactory, complementary diffraction experiments were performed at a synchrotron beamline with shorter wavelength. Refinements based on these intensity data gave very similar ADPs for both compounds and were thus in agreement with the earlier in-house results for the chloro derivative and the predictions of theory. We speculate that strong absorption by the heavy halogen may be the reason for the observed discrepancy.

A new tool for validating theoretically derived anisotropic displacement parameters with experiment: directionality of prolate displacement ellipsoids

How well do anisotropic displacement parameters from theory match experiment? The orientation of prolate ellipsoids contributes to the answer!

Computational Predictions and Microwave Plasma Synthesis of Superhard Boron-Carbon Materials

Superhard boron-carbon materials are of prime interest due to their non-oxidizing properties at high temperatures compared to diamond-based materials and their non-reactivity with ferrous metals under extreme conditions. In this work, evolutionary algorithms combined with density functional theory have been utilized to predict stable structures and properties for the boron-carbon system, including the elusive superhard BC₅ compound. We report on the microwave plasma chemical vapor deposition on a silicon substrate of a series of composite materials containing amorphous boron-doped graphitic carbon, boron-doped diamond, and a cubic hard-phase with a boron-content as high as 7.7 at%. The nanoindentation hardness of these composite materials can be tailored from 8 GPa to as high as 62 GPa depending on the growth conditions. These materials have been characterized by electron microscopy, X-ray photoelectron spectroscopy, Raman spectroscopy, X-ray diffraction, and nanoindentation hardness, and the experimental results are compared with theoretical predictions. Our studies show that a significant amount of boron up to 7.7 at% can be accommodated in the cubic phase of diamond and its phonon modes and mechanical properties can be accurately modeled by theory. This cubic hard-phase can be incorporated into amorphous boron-carbon matrices to yield superhard materials with tunable hardness values.

Lattice thermal expansion and anisotropic displacements in urea, bromomalonic aldehyde, pentachloropyridine, and naphthalene

Anisotropic displacement parameters (ADPs) are commonly used in crystallography, chemistry, and related fields to describe and quantify thermal motion of atoms. Within the very recent years, these ADPs have become predictable by lattice dynamics in combination with first-principles theory. Here, we study four very different molecular crystals, namely, urea, bromomalonic aldehyde, pentachloropyridine, and naphthalene, by first-principles theory to assess the quality of ADPs calculated in the quasi-harmonic approximation. In addition, we predict both the thermal expansion and thermal motion within the quasi-harmonic approximation and compare the predictions with the experimental data. Very reliable ADPs are calculated within the quasi-harmonic approximation for all four cases up to at least 200 K, and they turn out to be in better agreement with the experiment than those calculated within the harmonic approximation. In one particular case, ADPs can even reliably be predicted up to room temperature. Our results also hint at the importance of normal-mode anharmonicity in the calculation of ADPs.

Vibrational spectroscopy of hydrogens in diamond: a quantum mechanical treatment

The electronic and vibrational features of the VH_n (n = 1 to 4) family of defects in diamond (hydrogen atoms saturating the dangling bonds of the atoms surrounding a vacancy) are investigated at the quantum mechanical level by using the periodic supercell approach, an all electron Gaussian type basis set, hybrid functionals, and the Crystal code. Most of the results have been collected for supercells containing 64 atoms; however, in order to explore the effect of the defect concentration on both the IR and Raman spectra, supercells containing 216, 512 and 1000 atoms have also been considered in the VH₄ case. For each system, all the possible spin states are considered; their relative stability, band structure, charge and spin density distributions are thoroughly described. All the investigated systems present specific IR and Raman spectra, with vibrational spectroscopic features that can in principle be used as fingerprints for their characterization. This is particularly true for the C-H stretching, that ranges between 2500 and 4400 cm^-1. The stretching modes are strongly affected by anharmonicity that has been evaluated in this work; it turns out to be extremely sensitive to the H load and spin state of the system, and ranges from -335 cm^-1 for VH₁ to +85 cm^-1 for VH₄. All of the investigated defects have very low C-H stretching IR intensity, so that they essentially appear as silent, the exception being VH₁. The situation is different for the Raman spectra: the stretching modes of all defects do have similar large intensity; unfortunately here it is the experimental evidence that is lacking.

Large-Scale Condensed Matter DFT Simulations: Performance and Capabilities of the CRYSTAL Code

Nowadays, the efficient exploitation of high-performance computing resources is crucial to extend the applicability of first-principles theoretical methods to the description of large, progressively more realistic molecular and condensed matter systems. This can be achieved only by devising effective parallelization strategies for the most time-consuming steps of a calculation, which requires some effort given the usual complexity of quantum-mechanical algorithms, particularly so if parallelization is to be extended to all properties and not just to the basic functionalities of the code. In this Article, the performance and capabilities of the massively parallel version of the Crystal17 package for first-principles calculations on solids are discussed. In particular, we present: (i) recent developments allowing for a further improvement of the code scalability (up to 32 768 cores); (ii) a quantitative analysis of the scaling and memory requirements of the code when running calculations with several thousands (up to about 14 000) of atoms per cell; (iii) a documentation of the high numerical size consistency of the code; and (iv) an overview of recent ab initio studies of several physical properties (structural, energetic, electronic, vibrational, spectroscopic, thermodynamic, elastic, piezoelectric, topological) of large systems investigated with the code.

The A-center defect in diamond: quantum mechanical characterization through the infrared spectrum

The A-center in diamond, which consists of two nitrogen atoms substituting two neighboring carbon atoms, has been investigated at the quantum mechanical level using an all-electron Gaussian type basis set, hybrid functionals and the periodic supercell approach.

The VN3H defect in diamond: a quantum-mechanical characterization

The structural, electronic, energetic and vibrational spectroscopic (IR and Raman) properties of the VN₃H defect in diamond are investigated with quantum mechanical simulations.

Structural peculiarities of single crystal diamond needles of nanometer thickness

Diamond is attractive for various applications due to its unique mechanical and optical properties. In particular, single crystal diamond needles with high aspect ratios and sharp apexes of nanometer size are demanded for different types of optical sensors including optically sensing tip probes for scanning microscopy. This paper reports on electron microscopy and Raman spectroscopy characterization of the diamond needles having geometrically perfect pyramidal shapes with rectangular atomically flat bases with (001) crystallography orientation, 2-200 nm sharp apexes, and with lengths from about 10-160 μm. The needles were produced by selective oxidation of (001) textured polycrystalline diamond films grown by chemical vapor deposition. Here we study the types and distribution of defects inside and on the surface of the single crystal diamond needles. We show that sp3 type point defects are incorporated into the volume of the diamond crystal during growth, while the surface of the lateral facets is enriched by multiple extended defects. Nitrogen addition to the reaction mixture results in increase of the growth rate on {001} facets correlated with the rise in the concentration of sp3 type defects.

Infrared and Raman spectroscopic features of the self-interstitial defect in diamond from exact-exchange hybrid DFT calculations

Raman and infrared spectroscopic features of the self-interstitial defect in diamond are investigated with ab initio simulations by using a hybrid functional.