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Dinu DF, Oenen K, Schlagin J, Podewitz M, Grothe H, Loerting T, Liedl KR. How Vibrational Notations Can Spoil Infrared Spectroscopy: A Case Study on Isolated Methanol. ACS PHYSICAL CHEMISTRY AU 2024; 4:679-695. [PMID: 39634648 PMCID: PMC11613289 DOI: 10.1021/acsphyschemau.4c00053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 09/12/2024] [Accepted: 09/12/2024] [Indexed: 12/07/2024]
Abstract
Unraveling methanol's infrared spectrum has challenged spectroscopists for a century, with numerous loose ends still to be explored. We engage in this exploration based on experiments of isolating single methanol molecules in solid argon and neon matrices. We report infrared spectra of methanol in its natural isotopic composition and with partial and full deuteration. These experiments are accompanied by calculating wavenumbers involving anharmonicity and mode-coupling based on the vibrational configuration interaction approach. This allows for an unambiguous assignment of all fundamentals and resonances in the mid-infrared spectrum. An increasing degree of deuteration lifts resonances and aids in assigning bands uniquely. It also becomes evident that different notations typically used in chemistry or physics to describe molecular vibration from spectroscopy fail to describe the spectra appropriately. We highlight the shortcomings and suggest a more elaborate analysis using Sankey diagrams to unambiguously identify spectral features. Consequently, we demystify debated resonances occurring from various stretches and deformations of the methyl group.
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Affiliation(s)
- Dennis F. Dinu
- Institute
of Materials Chemistry, TU Wien, Getreidemarkt 9/165, Vienna 1060, Austria
- Department
of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80, Innsbruck 6020, Austria
- Department
of Physical Chemistry, University of Innsbruck, Innrain 52, Innsbruck 6020, Austria
| | - Kemal Oenen
- Department
of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80, Innsbruck 6020, Austria
| | - Jonas Schlagin
- Department
of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80, Innsbruck 6020, Austria
| | - Maren Podewitz
- Institute
of Materials Chemistry, TU Wien, Getreidemarkt 9/165, Vienna 1060, Austria
| | - Hinrich Grothe
- Institute
of Materials Chemistry, TU Wien, Getreidemarkt 9/165, Vienna 1060, Austria
| | - Thomas Loerting
- Department
of Physical Chemistry, University of Innsbruck, Innrain 52, Innsbruck 6020, Austria
| | - Klaus R. Liedl
- Department
of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80, Innsbruck 6020, Austria
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Hafizi Yazdabadi S, Mihrin D, Feilberg KL, Wugt Larsen R. Spectroscopic and Quantum Chemical Evidence of Amine-CO 2 and Alcohol-CO 2 Interactions: Confirming an Intriguing Affinity of CO 2 to Monoethanolamine (MEA). Molecules 2024; 29:5521. [PMID: 39683680 DOI: 10.3390/molecules29235521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2024] [Revised: 11/14/2024] [Accepted: 11/19/2024] [Indexed: 12/18/2024] Open
Abstract
A recent broadband rotational spectroscopic investigation of the cross-association mechanisms of CO2 with monoethanolamine (MEA) in molecular beams [F. Xie et al., Angew. Chem. Int. Ed., 2023, 62, e202218539] revealed an intriguing affinity of CO2 to the hydroxy group. These findings have triggered the present systematic vibrational spectroscopic exploration of weakly bound amine··CO2 and alcohol··CO2 van der Waals cluster molecules embedded in inert "quantum" matrices of neon at 4.2 K complemented by high-level quantum chemical conformational analyses. The non-covalent interactions formed between the amino and hydroxy groups and the electron-deficient carbon atom of CO2 are demonstrated to lift the degeneracy of the doubly degenerate intramolecular CO2-bending fundamental significantly with characteristic observed spectral splittings for the amine··CO2 (≈35-45 cm-1) and alcohol··CO2 (≈20-25 cm-1) interactions, respectively, despite the almost identically predicted total association energies (≈12-14 kJ·mol-1) for these van der Waals contacts, as revealed by benchmark Domain-based Local Pair Natural Orbital Coupled Cluster DLPNO-CCSD(T) theory. These high-level theoretical predictions reveal significantly higher "geometry preparation energies" for the amine··CO2 systems leading to a more severe distortion of the CO2 linearity upon complexation in agreement with the infrared spectroscopic findings. The systematic combined spectroscopic and quantum chemical evidences for cross-association between CO2 and amines/alcohols in the present work unambiguously confirm an intriguing binding preference of CO2 to the hydroxy group of the important carbon capture agent MEA, with an accurate vibrational zero-point energy corrected association energy (D0) of 13.5 kJ·mol-1 at the benchmark DLPNO-CCSD(T)/aug-cc-pV5Z level of theory.
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Affiliation(s)
- Sahar Hafizi Yazdabadi
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
- DTU Offshore, Technical University of Denmark, Elektrovej 375, 2800 Kongens Lyngby, Denmark
| | - Dmytro Mihrin
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
- DTU Offshore, Technical University of Denmark, Elektrovej 375, 2800 Kongens Lyngby, Denmark
| | - Karen Louise Feilberg
- DTU Offshore, Technical University of Denmark, Elektrovej 375, 2800 Kongens Lyngby, Denmark
| | - René Wugt Larsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
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3
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Bödecker M, Mihrin D, Suhm MA, Wugt Larsen R. Regularities and Anomalies in Neon Matrix Shifts of Hydrogen-Bonded O-H Stretching Fundamentals. J Phys Chem A 2024; 128:7124-7136. [PMID: 39155731 PMCID: PMC11372756 DOI: 10.1021/acs.jpca.4c03468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/20/2024]
Abstract
O-H bond stretching vibrations in hydrogen-bonded complexes embedded into cryogenic neon matrices are subtly downshifted from cold gas phase reference wavenumbers. To the extent that this shift is systematic, it enables neon matrices as more universally applicable spectroscopic benchmark environments for quantum chemical predictions. Outliers are indicative of either an assignment problem in one of the two cryogenic experiments or they reveal interesting dynamics or structural effects on the complexes as a function of the environment. We compile 6 literature-known pairs of experimental data in jet and neon matrix expansions and realize a 6-fold expansion of that number through targeted matrix isolation and/or slit jet expansion spectroscopy presented in this work. In many cases, the neon matrix shift is less than the uncertainty of the currently best-performing blind quantum chemical predictions for the gas phase, but in specific cases, it may exceed the currently achievable theoretical accuracy. Some evidence for a positive correlation of the matrix shift with the hydrogen bond shift is found, similar to observations for helium nanodroplets. Outliers in particular for water acting as a donor are discussed, and in a few cases they call for a future reinvestigation. Substantial improvement in the correlation of the matrix shift with the hydrogen bond shift is achieved for ketone monohydrates by removing a vibrational resonance. New insights into nitrile hydration isomerism are obtained, and the linear OH stretching spectrum of the jet-cooled ammonia-water complex is presented for the first time. Vibrational spectroscopy in weakly perturbing solid rare gas quantum matrices for the benchmarking of gas phase theory and future explicit theoretical treatments of the quantum matrix environment to better understand the outliers are both encouraged.
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Affiliation(s)
- Margarethe Bödecker
- Institute of Physical Chemistry, University of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Dmytro Mihrin
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark
| | - Martin A Suhm
- Institute of Physical Chemistry, University of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - René Wugt Larsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark
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4
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Mihrin D, Voute A, Jakobsen PW, Feilberg KL, Wugt Larsen R. The effect of alkylation on the micro-solvation of ethers revealed by highly localized water librational motion. J Chem Phys 2022; 156:084305. [DOI: 10.1063/5.0081161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The specific far-infrared spectral signatures associated with highly localized large-amplitude out-of-plane librational motion of water molecules have recently been demonstrated to provide sensitive spectroscopic probes for the micro-solvation of organic molecules [Mihrin et al., Phys. Chem. Chem. Phys. 21(4), 1717 (2019)]. The present work employs this direct far-infrared spectroscopic approach to investigate the non-covalent intermolecular forces involved in the micro-solvation of a selection of seven ether molecules with systematically varied alkyl substituents: dimethyl ether, diethyl ether, diisopropyl ether, ethyl methyl ether, t-butyl methyl ether, and t-butyl ethyl ether. The ranking of the observed out-of-plane water librational band signatures for this selected series of ether–water complexes embedded in inert neon matrices at 4 K reveals information about the interplay of directional intermolecular hydrogen bond motifs and non-directional and long-range dispersion interactions for the micro-solvated structures. These far-infrared observables differentiate minor subtle effects introduced by specific alkyl substituents and serve as rigorous experimental benchmarks for modern quantum chemical methodologies of various levels of scalability, which often fail to accurately predict the structural variations and corresponding vibrational signatures of the closely related systems. The accurate interaction energies of the series of ether–water complexes have been predicted by the domain based local pair natural orbital coupled cluster theory with single-, double-, and perturbative triple excitations, followed by a local energy decomposition analysis of the energy components. In some cases, the secondary dispersion forces are in direct competition with the primary intermolecular hydrogen bonds as witnessed by the specific out-of-plane librational signatures.
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Affiliation(s)
- D. Mihrin
- Danish Hydrocarbon Research and Technology Centre, Technical University of Denmark, Elektrovej 375, 2800 Kgs. Lyngby, Denmark
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark
| | - A. Voute
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark
| | - P. W. Jakobsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark
| | - K. L. Feilberg
- Danish Hydrocarbon Research and Technology Centre, Technical University of Denmark, Elektrovej 375, 2800 Kgs. Lyngby, Denmark
| | - R. Wugt Larsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark
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Gaseous hetero dimers of perfluoro tert-butyl alcohol with hydrogenated alcohols by infrared spectroscopy and quantum DFT calculations. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111110] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Oswald S, Suhm MA. Soft experimental constraints for soft interactions: a spectroscopic benchmark data set for weak and strong hydrogen bonds. Phys Chem Chem Phys 2019; 21:18799-18810. [PMID: 31453998 DOI: 10.1039/c9cp03651b] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
An experimental benchmark data base on rotational constants, vibrational properties and energy differences for weakly and more strongly hydrogen-bonded complexes and their constituents from the spectroscopic literature is assembled. It is characterized in detail and finally contracted to a more compact, discriminatory set (ENCH-51, for Experimental Non-Covalent Harmonic with 51 entries). The meeting points between theory and experiment consist of equilibrium rotational constants and harmonic frequencies and energies, which are back-corrected from experimental observables and are very easily accessible by quantum chemical calculations. The relative performance of B3LYP-D3, PBE0-D3 and M06-2X density functional theory predictions with a quadruple-zeta basis set is used to illustrate systematic errors, error compensation and selective performance for structural, vibrational and energetical observables. The current focus is on perspectives and different benchmarking methodologies, rather than on a specific theoretical method or a specific class of compounds. Extension of the data base in chemical, observable and quantum chemical method space is encouraged.
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Affiliation(s)
- Sönke Oswald
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstr. 6, 37077 Göttingen, Germany.
| | - Martin A Suhm
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstr. 6, 37077 Göttingen, Germany.
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Hansen AS, Vogt E, Kjaergaard HG. Gibbs energy of complex formation – combining infrared spectroscopy and vibrational theory. INT REV PHYS CHEM 2019. [DOI: 10.1080/0144235x.2019.1608689] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | - Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
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Mihrin D, Jakobsen PW, Voute A, Manceron L, Wugt Larsen R. High-resolution synchrotron terahertz investigation of the large-amplitude hydrogen bond librational band of (HCN) 2. Phys Chem Chem Phys 2018. [PMID: 29528052 DOI: 10.1039/c7cp08412a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The high-resolution terahertz absorption spectrum of the large-amplitude intermolecular donor librational band ν of the homodimer (HCN)2 has been recorded by means of long-path static gas-phase Fourier transform spectroscopy at 207 K employing a highly brilliant electron storage ring source. The rovibrational structure of the ν band has the typical appearance of a perpendicular type band of a Σ-Π transition for a linear polyatomic molecule. The generated terahertz spectrum is analyzed employing a standard semi-rigid linear molecule Hamiltonian, yielding a band origin ν0 of 119.11526(60) cm-1 together with values for the excited state rotational constant B', the excited state quartic centrifugal distortion constant DJ' and the l-type doubling constant q for the degenerate state associated with the ν mode. The until now missing donor librational band origin enables the determination of an accurate experimental value for the vibrational zero-point energy of 2.50 ± 0.05 kJ mol-1 arising from the entire class of large-amplitude intermolecular modes. The spectroscopic findings are complemented by CCSD(T)-F12b/aug-cc-pV5Z (electronic energies) and CCSD(T)-F12b/aug-cc-pVQZ (force fields) electronic structure calculations, providing a (semi)-experimental value of 17.20 ± 0.20 kJ mol-1 for the dissociation energy D0 of this strictly linear weak intermolecular CHN hydrogen bond.
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Affiliation(s)
- D Mihrin
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark.
| | - P W Jakobsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark.
| | - A Voute
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark.
| | - L Manceron
- Synchrotron SOLEIL, L'orme des Merisiers, Saint-Aubin-BP 48, 91192 Gif-sur-Yvette Cedex, France and Lab. MONARIS, CNRS-UPMC UMR8233, 4 Place Jussieu, 75230 Paris Cedex, France
| | - R Wugt Larsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark.
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Andersen J, Voute A, Mihrin D, Heimdal J, Berg RW, Torsson M, Wugt Larsen R. Probing the global potential energy minimum of (CH2O)2: THz absorption spectrum of (CH2O)2 in solid neon and para-hydrogen. J Chem Phys 2017; 146:244311. [DOI: 10.1063/1.4990042] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J. Andersen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - A. Voute
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - D. Mihrin
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - J. Heimdal
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - R. W. Berg
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - M. Torsson
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - R. Wugt Larsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
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Andersen J, Heimdal J, Nelander B, Wugt Larsen R. Competition between weak OH⋯π and CH⋯O hydrogen bonds: THz spectroscopy of the C2H2—H2O and C2H4—H2O complexes. J Chem Phys 2017; 146:194302. [PMID: 28527443 DOI: 10.1063/1.4983293] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- J Andersen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - J Heimdal
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
| | - B Nelander
- MAX-IV Laboratory, Lund University, P.O. Box 118, 22100 Lund, Sweden
| | - R Wugt Larsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kongens Lyngby, Denmark
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Oswald S, Wallrabe M, Suhm MA. Cooperativity in Alcohol-Nitrogen Complexes: Understanding Cryomatrices through Slit Jet Expansions. J Phys Chem A 2017; 121:3411-3422. [PMID: 28443670 DOI: 10.1021/acs.jpca.7b01265] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
FTIR spectroscopy of supersonic expansions is used to characterize alcohol dimers with one, two, and several nitrogen molecules attached to them. The nitrogen coating causes progressive spectral downshifts of the OH stretching fundamentals which are related to and explain matrix isolation shifts. Comparison of methanol, tert-butyl alcohol and ethanol as well as deuteration of methanol assist in the assignment. Alcohol monomers and trimers are significantly more resistant to nitrogen coating due to a lack of cooperativity and dangling bonds, respectively. In the case of ethanol, the role of conformational isomerism and combination bands is further elucidated. The experimental findings help rationalize the anomalously small OH stretching dimerization shift of methanol in the gas phase, in comparison to that of tert-butyl alcohol.
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Affiliation(s)
- Sönke Oswald
- Institut für Physikalische Chemie, Georg-August-Universität Göttingen , Tammannstraße 6, 37077 Göttingen, Germany
| | - Mareike Wallrabe
- Institut für Physikalische Chemie, Georg-August-Universität Göttingen , Tammannstraße 6, 37077 Göttingen, Germany
| | - Martin A Suhm
- Institut für Physikalische Chemie, Georg-August-Universität Göttingen , Tammannstraße 6, 37077 Göttingen, Germany
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