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Aleksanyan DV, Churusova SG, Dubasova EV, Ananyev IV, Artyushin OI, Peregudov AS, Klemenkova ZS, Denisov GL, Kozlov VA. Experimental and computational insights into the direct cyclopalladation of different unsymmetrical, yet closely related pincer ligands with thione sulfur donors. Polyhedron 2023. [DOI: 10.1016/j.poly.2023.116303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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2
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Wysokiński R, Zierkiewicz W, Michalczyk M, Maris T, Scheiner S. The Role of Hydrogen Bonds in Interactions between [PdCl 4] 2- Dianions in Crystal. Molecules 2022; 27:2144. [PMID: 35408543 PMCID: PMC9000617 DOI: 10.3390/molecules27072144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 03/18/2022] [Accepted: 03/22/2022] [Indexed: 11/17/2022] Open
Abstract
[PdCl4]2- dianions are oriented within a crystal in such a way that a Cl of one unit approaches the Pd of another from directly above. Quantum calculations find this interaction to be highly repulsive with a large positive interaction energy. The placement of neutral ligands in their vicinity reduces the repulsion, but the interaction remains highly endothermic. When the ligands acquire a unit positive charge, the electrostatic component and the full interaction energy become quite negative, signalling an exothermic association. Raising the charge on these counterions to +2 has little further stabilizing effect, and in fact reduces the electrostatic attraction. The ability of the counterions to promote the interaction is attributed in part to the H-bonds which they form with both dianions, acting as a sort of glue.
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Affiliation(s)
- Rafał Wysokiński
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Wiktor Zierkiewicz
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Mariusz Michalczyk
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland
| | - Thierry Maris
- Département de Chimie, Université de Montréal, Montréal, QC H3C 3J7, Canada;
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA;
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3
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Martínez‐Prieto LM, Río D, Álvarez E, Palma P, Cámpora J. Nucleophilic Nickel and Palladium Pincer Hydroxides: A Study of Their Reactions with Dimethyl Carbonate and Other Non‐Alkylating Organic Electrophiles. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202100400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Luis M. Martínez‐Prieto
- Instituto de Investigaciones Químicas CSIC-Universidad de Sevilla C/Américo Vespucio, 49. 41092 Seville Spain
- Instituto de Tecnología Química CSIC-Universidad Politécnica de Valencia Avda. de Los Naranjos, s/n. 46022 Valencia Spain
| | - Diego Río
- Instituto de Investigaciones Químicas CSIC-Universidad de Sevilla C/Américo Vespucio, 49. 41092 Seville Spain
| | - Eleuterio Álvarez
- Instituto de Investigaciones Químicas CSIC-Universidad de Sevilla C/Américo Vespucio, 49. 41092 Seville Spain
| | - Pilar Palma
- Instituto de Investigaciones Químicas CSIC-Universidad de Sevilla C/Américo Vespucio, 49. 41092 Seville Spain
| | - Juan Cámpora
- Instituto de Investigaciones Químicas CSIC-Universidad de Sevilla C/Américo Vespucio, 49. 41092 Seville Spain
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4
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Regulating PdC3/PtC3···thiophene interaction by small molecule doping (AgOTf, CuBr, CuI, CuBr2, PdCl2). Struct Chem 2019. [DOI: 10.1007/s11224-019-01362-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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5
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Rodríguez-Rey JL, Esteban-Gómez D, Platas-Iglesias C, Sousa-Pedrares A. Electronic versus steric control in palladium complexes of carboranyl phosphine-iminophosphorane ligands. Dalton Trans 2019; 48:486-503. [PMID: 30520489 DOI: 10.1039/c8dt04006k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new family of carboranyl phosphine-iminophosphorane ligands was prepared and characterized. The new ligands present a carboranyl group directly attached to the iminophosphorane nitrogen atom through a cage carbon atom (C-carboranyl derivatives L1-L3) or through the B3 boron atom (B-carboranyl derivatives L4 and L5), and the phosphine group on a side chain derived from the diphosphine dppm, i.e. with a two-atom spacer between the P and N donor atoms. The non-carboranyl analogue L6, with a biphenyl group on the nitrogen atom, was also synthesized for comparison. These potential (P, N) ligands were used to obtain palladium complexes (Pd1-Pd6) and, thus, study how the different inductive effect of the carboranyl substituents can modify the coordinating ability of the nitrogen atom. The structural analysis of the complexes revealed two different coordination modes for the ligands: the (P, N) chelate coordination and the unexpected P-terminal coordination, which is not observed for non-carboranyl phosphine-iminophosphoranes. These unexpected structural differences led us to perform DFT calculations on the ligands and metal complexes. The calculations show that the final coordination modes depend on the balance between the electronic and steric properties of the particular carboranyl group.
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Affiliation(s)
- José Luis Rodríguez-Rey
- Departamento de Química Inorgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain.
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Giron RGP, Ferguson GS. Tetrafluoroborate and Hexafluorophosphate Ions are not Interchangeable: A Density Functional Theory Comparison of Hydrogen Bonding. ChemistrySelect 2017. [DOI: 10.1002/slct.201702176] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Rachel Guia P. Giron
- Department of Chemistry; Lehigh University; 6 E. Packer Ave. Bethlehem PA 18015 USA
| | - Gregory S. Ferguson
- Departments of Chemistry and Materials Science & Engineering; Lehigh University; 6 E. Packer Ave. Bethlehem PA 18015 USA
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7
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Rauf W, Brown JM. Mechanisms for C(sp 2)-Si activation of aryltrimethylsilyl groups in palladium-catalysed couplings. Org Biomol Chem 2017; 15:8179-8185. [PMID: 28926074 DOI: 10.1039/c7ob01675a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Silyl-substituted aromatic compounds can participate as the electrophilic component in palladium-catalysed cross-couplings, and reactivity is enhanced by a neighbouring silyl-group. Products analogous to those obtained from C-H activation chemistry are accessible by this means with the additional benefit of regiochemistry defined by the site of silyl substitution. DFT studies described here show that the mechanism of C-Si cleavage is distinct from previously recognised mechanisms for C-H cleavage, with a cascade of silyl intermediates en route to a stable product. The amide directing-groups are involved only in the stabilisation of palladacyclic intermediates, and are never disposed to activate silicon directly. 5-Membered and 6-membered palladacycles are known to behave differently in coupling reactions and the calculations reveal underlying reasons in the cationic pathways studied here.
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Affiliation(s)
- Waqar Rauf
- Health Biotechnology Division, NIBGE, Faisalabad, Pakistan.
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Khan R, Boonseng S, Kemmitt PD, Felix R, Coles SJ, Tizzard GJ, Williams G, Simmonds O, Harvey J, Atack J, Cox H, Spencer J. Combining Sanford Arylations on Benzodiazepines with the Nuisance Effect. Adv Synth Catal 2017; 359:3261-3269. [PMID: 30100832 PMCID: PMC6079647 DOI: 10.1002/adsc.201700626] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 06/29/2017] [Indexed: 12/14/2022]
Abstract
5-Phenyl-1,3-dihydro-2H-1,4-benzodiazepin-2-ones react under palladium- and visible light photoredox catalysis, in refluxing methanol, with aryldiazonium salts to afford the respective 5-(2-arylphenyl) analogues. With 2- or 4-fluorobenzenediazonium derivatives, both fluoroaryl- and methoxyaryl- products were obtained, the latter resulting from a SNAr on the fluorobenzenediazonium salt ("nuisance effect"). A computational DFT analysis of the palladium-catalysed and the palladium/ruthenium-photocalysed mechanism for the functionalization of benzodiazepines indicated that, in the presence of the photocatalyst, the reaction proceeds via a low-energy SET pathway avoiding the high-energy oxidative addition step in the palladium-only catalysed reaction pathway.
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Affiliation(s)
- Raysa Khan
- Department of ChemistrySchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - Sarote Boonseng
- Department of ChemistrySchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - Paul D. Kemmitt
- OncologyAstraZeneca310 Cambridge Science ParkMilton RoadCambridgeCB4 0WGUK
| | - Robert Felix
- Tocris Bioscience, the Watkins BuildingAtlantic Road, AvonmouthBristolBS11 9QDUK
| | - Simon J. Coles
- UK National Crystallography ServiceSchool of ChemistryUniversity of SouthamptonHighfieldSouthamptonSO17 1BJU.K.
| | - Graham J. Tizzard
- UK National Crystallography ServiceSchool of ChemistryUniversity of SouthamptonHighfieldSouthamptonSO17 1BJU.K.
| | - Gareth Williams
- Sussex Drug Discovery CentreSchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - Olivia Simmonds
- Sussex Drug Discovery CentreSchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - Jessica‐Lily Harvey
- Sussex Drug Discovery CentreSchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - John Atack
- Sussex Drug Discovery CentreSchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - Hazel Cox
- Department of ChemistrySchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
| | - John Spencer
- Department of ChemistrySchool of Life SciencesUniversity of SussexFalmerBN1 9QJUK
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Boonseng S, Roffe GW, Targema M, Spencer J, Cox H. Rationalization of the mechanism of in situ Pd(0) formation for cross-coupling reactions from novel unsymmetrical pincer palladacycles using DFT calculations. J Organomet Chem 2017. [DOI: 10.1016/j.jorganchem.2017.02.040] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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10
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A comprehensive theoretical study of structural optimization, interaction energies calculations and solvent effects between ractopamine and functional monomers in molecular imprinting polymers. Polym Bull (Berl) 2017. [DOI: 10.1007/s00289-017-2140-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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The Trans Influence in Unsymmetrical Pincer Palladacycles: An Experimental and Computational Study. INORGANICS 2016. [DOI: 10.3390/inorganics4030025] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Cherry SDT, Kaminsky W, Heinekey DM. Structure of a Novel Rhodium Phosphinite Compound: Agostic Interactions as a Model for an Oxidative Addition Intermediate. Organometallics 2016. [DOI: 10.1021/acs.organomet.6b00418] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sophia D. T. Cherry
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Werner Kaminsky
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - D. Michael Heinekey
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
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Roffe GW, Boonseng S, Baltus CB, Coles SJ, Day IJ, Jones RN, Press NJ, Ruiz M, Tizzard GJ, Cox H, Spencer J. A synthetic, catalytic and theoretical investigation of an unsymmetrical SCN pincer palladacycle. ROYAL SOCIETY OPEN SCIENCE 2016; 3:150656. [PMID: 27152207 PMCID: PMC4852630 DOI: 10.1098/rsos.150656] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Accepted: 03/02/2016] [Indexed: 06/05/2023]
Abstract
The SCN ligand 2-{3-[(methylsulfanyl)methyl]phenyl}pyridine, 1, has been synthesized starting from an initial Suzuki-Miyaura (SM) coupling between 3-((hydroxymethyl)phenyl)boronic acid and 2-bromopyridine. The C-H activation of 1 with in situ formed Pd(MeCN)4(BF4)2 has been studied and leads to a mixture of palladacycles, which were characterized by X-ray crystallography. The monomeric palladacycle LPdCl 6, where L-H = 1, has been synthesized, and tested in SM couplings of aryl bromides, where it showed moderate activity. Density functional theory and the atoms in molecules (AIM) method have been used to investigate the formation and bonding of 6, revealing a difference in the nature of the Pd-S and Pd-N bonds. It was found that S-coordination to the metal in the rate determining C-H bond activation step leads to better stabilization of the Pd(II) centre (by 13-28 kJ mol(-1)) than with N-coordination. This is attributed to the electron donating ability of the donor atoms determined by Bader charges. The AIM analysis also revealed that the Pd-N bonds are stronger than the Pd-S bonds influencing the stability of key intermediates in the palladacycle formation reaction pathway.
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Affiliation(s)
- Gavin W. Roffe
- Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK
| | - Sarote Boonseng
- Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK
| | - Christine B. Baltus
- School of Science, University of Greenwich at Medway, University of Greenwich, Chatham ME4 4TB, UK
| | - Simon J. Coles
- UK National Crystallography Service, School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK
| | - Iain J. Day
- Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK
| | - Rhiannon N. Jones
- Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK
| | - Neil J. Press
- Novartis Pharmaceuticals UK Ltd, Horsham RH12 5AB, UK
| | - Mario Ruiz
- School of Science, University of Greenwich at Medway, University of Greenwich, Chatham ME4 4TB, UK
| | - Graham J. Tizzard
- UK National Crystallography Service, School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK
| | - Hazel Cox
- Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK
| | - John Spencer
- Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK
- School of Science, University of Greenwich at Medway, University of Greenwich, Chatham ME4 4TB, UK
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