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Wang H, Liu Y, Su C, Schulz CE, Fan Y, Bian Y, Li J. Perspectives on Ligand Properties of N-Heterocyclic Carbenes in Iron Porphyrin Complexes. Inorg Chem 2021; 61:847-856. [PMID: 34962794 DOI: 10.1021/acs.inorgchem.1c02444] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
There has been considerable research interest in the ligand nature of N-heterocyclic carbenes (NHCs). In this work, two six-coordinate NHC iron porphyrin complexes [FeII(TTP)(1,3-Me2Imd)2] (TTP = tetratolylporphyrin, 1,3-Me2Imd = 1,3-dimethylimidazol-2-ylidene) and [FeIII(TDCPP)(1,3-Me2Imd)2]ClO4 (TDCPP = 5,10,15,20-tetrakis(2,6-dichlorophenyl)porphyrin) are reported. Single-crystal X-ray characterizations demonstrate that both complexes have strongly ruffled conformations and relatively perpendicular ligand orientations which are forced by the sterically bulky 1,3-Me2Imd NHC ligands. Multitemperature (4.2-300 K) and high magnetic field (0-9 T) Mössbauer and low-temperature (4.0 K) EPR spectroscopies definitely confirmed the low-spin states of [FeII(TTP)(1,3-Me2Imd)2] (S = 0) and [FeIII(TDCPP)(1,3-Me2Imd)2]ClO4 (S = 1/2). The similarity of 1,3-Me2Imd and imidazole, as well as the well-established correlations between the ligand nature and spectroscopic characteristics of [FeII,III(Porph)(L)2]0,+ (Porph: porphyrin; L: planar base ligand) species, allowed direct comparisons between the pair of ligands which revealed for the first time that NHC has a stronger π-acceptor ability than imidazoles, in addition to its very strong σ-donation.
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Affiliation(s)
- Haimang Wang
- College of Materials Science and Optoelectronic Technology & CAS Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
| | - Yulong Liu
- College of Materials Science and Optoelectronic Technology & CAS Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
| | - Chaorui Su
- Department of Chemistry, School of Chemistry and Biological Engineering, Beijing Key Laboratory for Science and Application of Functional Molecular and Crystalline Materials, and Daxing Research Institute, University of Science and Technology Beijing, Beijing 100083, China
| | - Charles E Schulz
- Department of Physics, Knox College, Galesburg, Illinois 61401, United States
| | - Yingying Fan
- College of Materials Science and Optoelectronic Technology & CAS Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
| | - Yongzhong Bian
- Department of Chemistry, School of Chemistry and Biological Engineering, Beijing Key Laboratory for Science and Application of Functional Molecular and Crystalline Materials, and Daxing Research Institute, University of Science and Technology Beijing, Beijing 100083, China
| | - Jianfeng Li
- Department of Chemistry, School of Chemistry and Biological Engineering, Beijing Key Laboratory for Science and Application of Functional Molecular and Crystalline Materials, and Daxing Research Institute, University of Science and Technology Beijing, Beijing 100083, China
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Fan Y, Li J. Bis(1-methylimidazole)[ meso-α,α,α,α-tetrakis( o-nicotinamidophenyl)porphinato]iron(II)–1-methylimidazole–tetrahydrofuran (1/1/1.5). IUCRDATA 2021; 6:0. [PMID: 36338266 PMCID: PMC9462339 DOI: 10.1107/s2414314621005319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 05/19/2021] [Indexed: 11/25/2022] Open
Abstract
The crystal structure of the bis(1-methylimidazole)-ligated iron(II) picket-fence porphyrin derivative [FeII(C68H44N12O4)(C4H6N2)2]·C4H6N2·1.5C4H8O is investigated. In the title compound, [FeII(C68H44N12O4)(C4H6N2)2]·C4H6N2·1.5C4H8O, the central FeII ion is coordinated by four pyrrole N atoms of the porphyrin core and two N atoms of the 1-methylimidazole ligands in the axial sites. One 1-methylimidazole and one and a half tetrahydrofuran solvent molecules are also present in the asymmetric unit. The complex exhibits a near planar porphyrin core conformation, in which the iron centre is slightly displaced towards the hindered porphyrin side (0.01 Å). The average Fe—Np (Np refers to the pyrrole nitrogen atoms in the porphyrin) bond length is 1.990 (9) Å, and the axial Fe—NIm (NIm refers to the imidazole nitrogen atoms) bond lengths are 1.993 (3) and 2.004 (3) Å. The dihedral angle between the two coordinated 1-methylimidazole planes is 56.6 (2)°. The dihedral angles between the 1-methylimidazole planes and the planes of the closest Fe—Np vector are 16.8 (2) and 39.8 (2)°. N—H⋯N and N—H⋯O interactions are observed in the crystal structure.![]()
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Yao Z, Schulz CE, Yang J, Li X, Li J. Intermolecular Interactions and Intramolecular Couplings of Binuclear Porphyrin Models for Cytochrome c Oxidase. Inorg Chem 2020; 59:1242-1255. [PMID: 31910004 DOI: 10.1021/acs.inorgchem.9b02958] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cytochrome c oxidase (CcO) has a binuclear active site composed of a high-spin heme group and a tris-histidine-ligated copper ion (CuB). By using two different porphyrin models derived by Gunter (H2TPyPP) and us (H2TImPP), we have isolated several mono- and binuclear complexes including one carbonyl and three chloride derivatives which are determined by 100 K single-crystal X-ray. Low-temperature (4 K) EPR and multitemperature (295-25 K) Mössbauer investigations on the products not only confirmed the spin states of the two metal ions (S = 5/2 Fe3+ and S = 1/2 Cu2+) but also revealed the intermolecular interactions and intramolecular couplings which are in accordance with the crystal structural features.
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Affiliation(s)
| | - Charles E Schulz
- Department of Physics , Knox College , Galesburg , Illinois 61401 , United States
| | - Jiahui Yang
- Bruker (Beijing) Scientific Technology Company , Hechuan Road, Minhang District , Shanghai 200233 , China
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Coordination chemistry of mononuclear ruthenium complexes bearing versatile 1,8-naphthyridine units: Utilization of specific reaction sites constructed by the secondary coordination sphere. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2017.11.024] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Wang H, Wei X, Li J. Synthesis and characterization of six-coordinate iron(II/III) 5,10,15,20-tetrakis(pentafluorophenyl) porphyrinato complexes with non-hindered imidazole ligands. J PORPHYR PHTHALOCYA 2018. [DOI: 10.1142/s1088424618500530] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Four bis-imidazole iron(II/III) 5,10,15,20-tetrakis(pentafluorophenyl)porphyrinato (TFPP) complexes, [Fe(TFPP)(1-MeIm)[Formula: see text]], [Fe(TFPP)(1-VinylIm)[Formula: see text]], [Fe(TFPP)(4-MeHIm)[Formula: see text]]Cl and [Fe(TFPP)(1-EtIm)[Formula: see text]]BF[Formula: see text] (1-MeIm [Formula: see text] 1-methylimidazole, 1-VinylIm [Formula: see text] 1-vinylimidazole, 4-MeHIm [Formula: see text] 4-methylimidazole and 1-EtIm [Formula: see text] 1-ethylimidazole) were synthesized and characterized by single-crystal X-ray and UV-vis spectroscopy. A negative correlation is found between the absolute imidazole orientation ([Formula: see text] and the Fe–N[Formula: see text] distance for the [Fe(II)(Porph)(Im)[Formula: see text]] (Im [Formula: see text] 1-MeIm or 4-MeHIm) complexes where the smaller [Formula: see text] angle corresponds to a longer axial distance. Hydrogen bonding, which might affect the orientations of the axial imidazoles is found for Fe(TFPP)(4-MeHIm)[Formula: see text]]Cl (A and B). The autoreduction of [Fe(III)(TFPP)]Cl to [Fe(II)(TFPP)(1-MeIm)[Formula: see text]] with 1-methylimidazole has been monitored by UV-vis spectroscopic titration.
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Affiliation(s)
- Haimang Wang
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, P. R. China
- College of Materials Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing, 101408, P. R. China
| | - Xuehong Wei
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, P. R. China
- Scientific Instrument Center, Shanxi University, Taiyuan, 030006, P. R. China
| | - Jianfeng Li
- College of Materials Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing, 101408, P. R. China
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Nye DB, Preimesberger MR, Majumdar A, Lecomte JTJ. Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates. Biochemistry 2018; 57:631-644. [PMID: 29271191 DOI: 10.1021/acs.biochem.7b01155] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The hemoglobin of Synechococcus sp. PCC 7002, GlbN, is a monomeric group I truncated protein (TrHb1) that coordinates the heme iron with two histidine ligands at neutral pH. One of these is the distal histidine (His46), a residue that can be displaced by dioxygen and other small molecules. Here, we show with mutagenesis, electronic absorption spectroscopy, and nuclear magnetic resonance (NMR) spectroscopy that at high pH and exclusively in the ferrous state, Lys42 competes with His46 for the iron coordination site. When b heme is originally present, the population of the lysine-bound species remains too small for detailed characterization; however, the population can be increased significantly by using dimethyl-esterified heme. Electronic absorption and NMR spectroscopies showed that the reversible ligand switching process occurs with an apparent pKa of 9.3 and a Lys-ligated population of ∼60% at the basic pH limit in the modified holoprotein. The switching rate, which is slow on the chemical shift time scale, was estimated to be 20-30 s-1 by NMR exchange spectroscopy. Lys42-His46 competition and attendant conformational rearrangement appeared to be related to weakened bis-histidine ligation and enhanced backbone dynamics in the ferrous protein. The pH- and redox-dependent ligand exchange process observed in GlbN illustrates the structural plasticity allowed by the TrHb1 fold and demonstrates the importance of electrostatic interactions at the heme periphery for achieving axial ligand selection. An analogy is drawn to the alkaline transition of cytochrome c, in which Lys-Met competition is detected at alkaline pH, but, in contrast to GlbN, in the ferric state only.
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Affiliation(s)
- Dillon B Nye
- T. C. Jenkins Department of Biophysics, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Matthew R Preimesberger
- T. C. Jenkins Department of Biophysics, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Ananya Majumdar
- Biomolecular NMR Center, Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Juliette T J Lecomte
- T. C. Jenkins Department of Biophysics, Johns Hopkins University , Baltimore, Maryland 21218, United States
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Yao Z, Schulz CE, Zhan N, Li J. Iron(II) Bis(imidazole) Derivatives of a Binuclear Porphyrin Model: Crystal Structures and Mössbauer Properties. Inorg Chem 2017; 56:12615-12624. [DOI: 10.1021/acs.inorgchem.7b02092] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Zhen Yao
- College of Materials
Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi
Lake, Huairou District, Beijing 101408, China
| | - Charles E. Schulz
- Department of Physics, Knox College, Galesburg, Illinois 61401, United States
| | - Nana Zhan
- College of Materials
Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi
Lake, Huairou District, Beijing 101408, China
| | - Jianfeng Li
- College of Materials
Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi
Lake, Huairou District, Beijing 101408, China
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Ngo TH, Labuta J, Lim GN, Webre WA, D'Souza F, Karr PA, Lewis JEM, Hill JP, Ariga K, Goldup SM. Porphyrinoid rotaxanes: building a mechanical picket fence. Chem Sci 2017; 8:6679-6685. [PMID: 30155230 PMCID: PMC6103255 DOI: 10.1039/c7sc03165c] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 08/03/2017] [Indexed: 12/02/2022] Open
Abstract
Building on recent progress in the synthesis of functional porphyrins for a range of applications using the Cu-mediated azide-alkyne cycloaddition (CuAAC) reaction, we describe the active template CuAAC synthesis of interlocked triazole functionalised porphyrinoids in excellent yield. By synthesising interlocked analogues of previously studied porphyrin-corrole conjugates, we demonstrate that this approach gives access to rotaxanes in which the detailed electronic properties of the axle component are unchanged but whose steric properties are transformed by the mechanical "picket fence" provided by the threaded rings. Our results suggest that interlocked functionalised porphyrins, readily available using the AT-CuAAC approach, are sterically hindered scaffolds for the development of new catalysts and materials.
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Affiliation(s)
- T H Ngo
- International Center for Young Scientists (ICYS) , WPI Center for Materials Nanoarchitectonics (WPI-MANA) , National Institute for Materials Science , Namiki 1-1 , Tsukuba , Ibaraki 305-0044 , Japan .
- WPI Center for Materials Nanoarchitectonics , National Institute for Materials Science , Namiki 1-1 , Tsukuba , Ibaraki 305-0044 , Japan
| | - J Labuta
- WPI Center for Materials Nanoarchitectonics , National Institute for Materials Science , Namiki 1-1 , Tsukuba , Ibaraki 305-0044 , Japan
- International Center for Young Scientists (ICYS-SENGEN) , National Institute for Materials Science , Sengen 1-2-1 , Tsukuba , Ibaraki 305-0047 , Japan
| | - G N Lim
- Department of Chemistry , University of North Texas , 1155 Union Circle , 305070 , Denton , TX 76203 , USA .
| | - W A Webre
- Department of Chemistry , University of North Texas , 1155 Union Circle , 305070 , Denton , TX 76203 , USA .
| | - F D'Souza
- Department of Chemistry , University of North Texas , 1155 Union Circle , 305070 , Denton , TX 76203 , USA .
| | - P A Karr
- Department of Physical Sciences and Mathematics , Wayne State College , 111 Main Street , Wayne , Nebraska 68787 , USA
| | - J E M Lewis
- Department of Chemistry , University of Southampton , University Road , Highfield , Southampton , SO17 1BJ , UK .
| | - J P Hill
- WPI Center for Materials Nanoarchitectonics , National Institute for Materials Science , Namiki 1-1 , Tsukuba , Ibaraki 305-0044 , Japan
| | - K Ariga
- WPI Center for Materials Nanoarchitectonics , National Institute for Materials Science , Namiki 1-1 , Tsukuba , Ibaraki 305-0044 , Japan
| | - S M Goldup
- Department of Chemistry , University of Southampton , University Road , Highfield , Southampton , SO17 1BJ , UK .
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Oyama D, Yamanaka T, Abe R, Takase T. Ruthenium complexes bearing a tridentate polypyridyl ligand with non-coordinating donor atoms: Construction of a specific coordination environment involving noncovalent interactions. J Organomet Chem 2017. [DOI: 10.1016/j.jorganchem.2016.12.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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10
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Hu B, He M, Yao Z, Schulz CE, Li J. Unique Axial Imidazole Geometries of Fully Halogenated Iron(II) Porphyrin Complexes: Crystal Structures and Mössbauer Spectroscopic Studies. Inorg Chem 2016; 55:9632-9643. [DOI: 10.1021/acs.inorgchem.6b01364] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Bin Hu
- College
of Materials Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
| | - Mingrui He
- College
of Materials Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
| | - Zhen Yao
- College
of Materials Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
| | - Charles E. Schulz
- Department
of Physics, Knox College, Galesburg, Illinois 61401, United States
| | - Jianfeng Li
- College
of Materials Science and Optoelectronic Technology, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing 101408, China
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He B, Li X, Li J. Carbonyl ligands in modified “picket fence” iron porphyrin complexes: Order and disorder. J Organomet Chem 2016. [DOI: 10.1016/j.jorganchem.2016.02.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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