Secondary Coordination Sphere Influences the Formation of Fe(III)-O or Fe(III)-OH in Nitrite Reduction: A Synthetic and Computational Study

The reduction of nitrite (NO₂^-) to generate nitric oxide (NO) is a significant area of research due to their roles in the global nitrogen cycle. Here, we describe various modifications of the tris(5-cyclohexyliminopyrrol-2-ylmethyl)amine H₃[N(pi^R)₃] ligand where the steric bulk and acidity of the secondary coordination sphere were explored in the non-heme iron system for nitrite reduction. The cyclohexyl and 2,4,6-trimethylphenyl variants of the ligand were used to probe the mechanism of nitrite reduction. While previously stoichiometric addition of nitrite to the iron(II)-species generated an iron(III)-oxo complex, changing the secondary coordination sphere to mesityl resulted in an iron(III)-hydroxo complex. Subsequent addition of an electron and two protons led to the release of water and regeneration of the starting iron(II) catalyst. This sequence mirrored the proposed mechanism of nitrite reduction in biological systems, where the distal histidine residue shuttles protons to the active site. Computational studies aimed at interrogating the dissimilar behavior of the cyclohexyl and mesityl ligand systems resulting in Fe(III)-oxo and Fe(III)-hydroxo complexes, respectively, shed light on the key role of H-bonds involving the secondary coordination sphere in the relative stability of these species.

Synthesis of a series of M(II) (M = Mn, Fe, Co) chloride complexes with both inter- and intra-ligand hydrogen bonding interactions

Hydrogen bonding networks are vital for metallo-enzymes to function; however, modeling these systems is non-trivial. We report the synthesis of metal chloride (M = Mn, Fe, Co) complexes with intra- and inter-ligand hydrogen bonding interactions. The intra-ligand hydrogen bonds are shown to have a profound effect on the geometry of the metal center.

Versatility of the bis(iminopyrrolylmethyl)amine ligand: tautomerism, protonation, helical chirality, and the secondary coordination sphere with halogen bonds in the formation of copper(II) and nickel(II) complexes

The reaction of N,N-di(2,6-bis(isopropyl)phenylimino-pyrrolyl-α-methyl)-N-methylamine H2L1 with copper(i) sources such as CuX (X = Cl (1), Br (2), and I (3)) afforded bis(chelated) ionic copper(ii) complexes of the type [CuL1H]X. A similar type of mononuclear structure was obtained with Cu(NO3)2·(H2O)3. Conversely, binuclear copper(ii) complexes [Cu2(μ-L1)(μ-OOCCH3)(μ-OH)](4) and [Cu2(μ-L1H)(μ-OOCPh)(μ-O)] (5) were obtained from the reaction of Cu(O2CR)2·H2O with H2L1. Notably, these reactions in the presence of a base yielded the neutral copper(ii) complex [CuL1] (6). This product was also obtained from the reaction of complex 2 or 4 with NaOH in methanol. All structures feature a dianionic imino-pyrrole motif and a protonated central amine function except 4. The reaction of H2L1 with NiCl2·DME gave the mononuclear complex [NiCl2(L1H2)], 7. In contrast to this, the reaction of the newly synthesized sterically less encumbered ligand N,N-di(phenylimino-pyrrolyl-α-methyl)-N-methylamine H2L2 with NiCl2·DME gave the binuclear complex [NiCl(L2H2)(HOMe)]2[Cl]2 (8). Both 7 and 8 show the amine-azafulvene ligand form and coordination of the central amine. The reaction of complex 7 with NaHBEt3 yielded a neutral complex [NiL1] (8) containing the imino-pyrrole form. In the molecular structures, interesting secondary coordination spheres incorporating guest molecules such as CHCl3 and MeOH in the crystal lattices and the presence of helical enantiomers were observed and analysed. In one case, CHCl3 was found inside an unusual cage-like structure supported by halogen bonds. Preliminary DFT calculations on the geometry of the nickel complex with H2L1 showed that the pentacoordinated tbp geometry is more stable than the square planar geometry.

Characterization of Terminal Iron(III)-Oxo and Iron(III)-Hydroxo Complexes Derived from O2 Activation

O₂ activation at nonheme iron centers is a common motif in biological systems. While synthetic models have provided numerous insights into the reactivity of high-valent iron-oxo complexes related to biological processes, the majority of these complexes are synthesized using alternative oxidants. This report describes O₂ activation by an iron(II)-triflate complex of the imino-functionalized tris(pyrrol-2-ylmethyl)amine ligand framework, H₃[N(pi^Cy)₃]. Initial reaction conditions result in the formation of a mixture of oxidation products including terminal iron(III)-oxo and iron(III)-hydroxo complexes. The relevance of these species to the O₂ activation process is demonstrated through reactivity studies and electrochemical analysis of the iron(III)-oxo complex.

Radical Rebound Hydroxylation Versus H-Atom Transfer in Non-Heme Iron(III)-Hydroxo Complexes: Reactivity and Structural Differentiation

The characterization of high-valent iron centers in enzymes has been aided by synthetic model systems that mimic their reactivity or structural and spectral features. For example, the cleavage of dioxygen often produces an iron(IV)-oxo that has been characterized in a number of enzymatic and synthetic systems. In non-heme 2-oxogluterate dependent (iron-2OG) enzymes, the ferryl species abstracts an H-atom from bound substrate to produce the proposed iron(III)-hydroxo and caged substrate radical. Most iron-2OG enzymes perform a radical rebound hydroxylation at the site of the H-atom abstraction (HAA); however, recent reports have shown that certain substrates can be desaturated through the loss of a second H atom at a site adjacent to a heteroatom (N or O) for most native desaturase substrates. One proposed mechanism for the removal of the second H-atom  involves a polar-cleavage mechanism (electron transfer-proton transfer) by the iron(III)-hydroxo, as opposed to a second HAA. Herein we report the synthesis and characterization of a series of iron complexes with hydrogen bonding interactions between bound aquo or hydroxo ligands and the secondary coordination sphere in ferrous and ferric complexes. Interconversion among the iron species is accomplished by stepwise proton or electron addition or subtraction, as well as H-atom transfer (HAT). The calculated bond dissociation free energies (BDFEs) of two ferric hydroxo complexes, differentiated by their noncovalent interactions and reactivity, suggest that neither complex is capable of activating even weak C-H bonds, lending further support to the proposed mechanism for desaturation in iron-2OG desaturase enzymes. Additionally, the ferric hydroxo species are differentiated by their reactivity toward performing a radical rebound hydroxylation of triphenylmethylradical. Our findings should encourage further study of the desaturase systems that may contain unique H-bonding motifs proximal to the active site that help bias substrate desaturation over hydroxylation.

Hydrogen Bonds Dictate O2 Capture and Release within a Zinc Tripod

Six directed hydrogen bonding (H-bonding) interactions allow for the reversible capture and reduction of dioxygen to a trans-1,2-peroxo within a tripodal zinc(II) framework. Spectroscopic studies of the dizinc peroxides, as well as on model zinc diazides, suggest H-bonding contributions serve a dominant role for the binding/activation of these small molecules.

A bioinspired iron catalyst for nitrate and perchlorate reduction

Nitrate and perchlorate have considerable use in technology, synthetic materials, and agriculture; as a result, they have become pervasive water pollutants. Industrial strategies to chemically reduce these oxyanions often require the use of harsh conditions, but microorganisms can efficiently reduce them enzymatically. We developed an iron catalyst inspired by the active sites of nitrate reductase and (per)chlorate reductase enzymes. The catalyst features a secondary coordination sphere that aids in oxyanion deoxygenation. Upon reduction of the oxyanions, an iron(III)-oxo is formed, which in the presence of protons and electrons regenerates the catalyst and releases water.

Structural and magnetic properties of heptacoordinated MnII complexes containing a 15-membered pyridine-based macrocycle and halido/pseudohalido axial coligands

Heptacoordinated Mn^II compounds with a pentadentate 15-membered pyridine-based macrocycle and two axially coordinated halido/pseudohalido coligands, having a monomeric or polymeric composition, were investigated.