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Liu YQ, Kalita AJ, Zhang HY, Cui LJ, Yan B, Guha AK, Cui ZH, Pan S. BeM(CO)3- (M = Co, Rh, Ir) and BeM(CO)3 (M = Ni, Pd, Pt): Triply bonded terminal beryllium in zero oxidation state. J Chem Phys 2024; 160:184308. [PMID: 38738611 DOI: 10.1063/5.0181343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 04/25/2024] [Indexed: 05/14/2024] Open
Abstract
We perform detailed potential energy surface explorations of BeM(CO)3- (M = Co, Rh, Ir) and BeM(CO)3 (M = Ni, Pd, Pt) using both single-reference and multireference-based methods. The present results at the CASPT2(12,12)/def2-QZVPD//M06-D3/def2-TZVPPD level reveal that the global minimum of BeM(CO)3- (M = Co, Rh, Ir) and BePt(CO)3 is a C3v symmetric structure with an 1A1 electronic state, where Be is located in a terminal position bonded to M along the center axis. For other cases, the C3v symmetric structure is a low-lying local minimum. Although the present complexes are isoelectronic with the recently reported BFe(CO)3- complex having a B-Fe quadruple bond, radial orbital-energy slope (ROS) analysis reveals that the highest occupied molecular orbital (HOMO) in the title complexes is slightly antibonding in nature, which bars a quadruple bonding assignment. Similar weak antibonding nature of HOMO in the previously reported BeM(CO)4 (M = Ru, Os) complexes is also noted in ROS analysis. The bonding analysis through energy decomposition analysis in combination with the natural orbital for chemical valence shows that the bonding between Be and M(CO)3q (q = -1 for M = Co, Rh, Ir and q = 0 for M = Ni, Pd, Pt) can be best described as Be in the ground state (1S) interacting with M(CO)30/- via dative bonds. The Be(spσ) → M(CO)3q σ-donation and the complementary Be(spσ) ← M(CO)3q σ-back donation make the overall σ bond, which is accompanied by two weak Be(pπ) ← M(CO)3q π-bonds. These complexes represent triply bonded terminal beryllium in an unusual zero oxidation state.
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Affiliation(s)
- Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Amlan J Kalita
- Department of Chemistry, University of Science & Technology, Meghalaya, Ri-Bhoi, Meghalaya 793101, India
| | - Hui-Yu Zhang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Li-Juan Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Bing Yan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Ankur K Guha
- Advanced Computational Chemistry Centre, Department of Chemistry, Cotton University, Panbazar, Guwahati, Assam 781001, India
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
- Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University, Changchun 130023, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
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Cong F, Cai L, Cheng J, Pu Z, Wang X. Beryllium Dimer Reactions with Acetonitrile: Formation of Strong Be-Be Bonds. Molecules 2023; 29:177. [PMID: 38202759 PMCID: PMC10779904 DOI: 10.3390/molecules29010177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 12/25/2023] [Accepted: 12/26/2023] [Indexed: 01/12/2024] Open
Abstract
Laser ablated Be atoms have been reacted with acetonitrile molecules in 4 K solid neon matrix. The diberyllium products BeBeNCCH3 and CNBeBeCH3 have been identified by D and 13C isotopic substitutions and quantum chemical calculations. The stabilization of the diberyllium species is rationalized from the formation of the real Be-Be single bonds with bond distances as 2.077 and 2.058 Å and binding energies as -27.1 and -77.2 kcal/mol calculated at CCSD (T)/aug-cc-pVTZ level of theory for BeBeNCCH3 and CNBeBeCH3, respectively. EDA-NOCV analysis described the interaction between Be2 and NC···CH3 fragments as Lewis "acid-base" interactions. In the complexes, the Be2 moiety carries positive charges which transfer from antibonding orbital of Be2 to the bonding fragments significantly strengthen the Be-Be bonds that are corroborated by AIM, LOL and NBO analyses. In addition, mono beryllium products BeNCCH3, CNBeCH3, HBeCH2CN and HBeNCCH2 have also been observed in our experiments.
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Affiliation(s)
- Fei Cong
- Shanghai Key Lab of Chemical Assessment and Sustainability, School of Chemical Science and Engineering, Tongji University, Shanghai 200092, China; (F.C.); (L.C.); (J.C.)
| | - Liyan Cai
- Shanghai Key Lab of Chemical Assessment and Sustainability, School of Chemical Science and Engineering, Tongji University, Shanghai 200092, China; (F.C.); (L.C.); (J.C.)
| | - Juanjuan Cheng
- Shanghai Key Lab of Chemical Assessment and Sustainability, School of Chemical Science and Engineering, Tongji University, Shanghai 200092, China; (F.C.); (L.C.); (J.C.)
| | - Zhen Pu
- China Academy of Engineering and Physics, Mianyang 621900, China
| | - Xuefeng Wang
- Shanghai Key Lab of Chemical Assessment and Sustainability, School of Chemical Science and Engineering, Tongji University, Shanghai 200092, China; (F.C.); (L.C.); (J.C.)
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Parambath S, Narayanan S J J, Parameswaran P. Five-membered N-heterocyclic beryllium(I) compounds: fluctuating electronic structures with ambiphilic reactivity. Dalton Trans 2023; 52:3378-3385. [PMID: 36810658 DOI: 10.1039/d2dt03263e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The structure, bonding, and reactivity of the five-membered N-heterocyclic beryllium compounds (NHBe), BeN2C2H4 (1) and BeN2(CH3)2C2H2 (2) were studied at the M06/def2-TZVPP//BP86/def2-TZVPP level of theory. The molecular orbital analysis indicates that NHBe is an aromatic 6π-electron system with an unoccupied σ-type spn-hybrid orbital on Be. Energy decomposition analysis combined with natural orbitals for chemical valence has been carried out with Be and L (L = N2C2H4 (1), N2(CH3)2C2H2 (2)) in their different electronic states as fragments at the BP86/TZ2P level of theory. The results indicate that the best bonding representation can be considered as an interaction between Be+ having the 2s02px12py02pz0 electronic configuration and L-. Accordingly, L- forms two donor-acceptor σ-bonds and one electron sharing π-bond with Be+. Compounds 1 and 2 show high proton and hydride affinity at beryllium, indicating its ambiphilic reactivity. The protonated structure results from adding a proton on the lone pair of electrons in the doubly excited state. On the other hand, the hydride adduct is formed by donating electrons from the hydride to an unoccupied σ-type spn-hybrid orbital on Be. These compounds show very high exothermic reaction energy for adduct formation with two electron donor ligands such as cAAC, CO, NHC, and PMe3.
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Affiliation(s)
- Sneha Parambath
- Department of Chemistry, National Institute of Technology, Calicut, Kerala, India.
| | - Jishnu Narayanan S J
- Department of Chemistry, National Institute of Technology, Calicut, Kerala, India.
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Liu X, Zhang M, Zhong R, Wu S, Liu Y, Geng Y, Su Z. Computational Study of sp x (x=1-3)-Hybridized Be-Be Bonds Stabilized by Amidinate Ligands. Chemistry 2020; 26:10891-10895. [PMID: 32297691 DOI: 10.1002/chem.201905230] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Revised: 03/30/2020] [Indexed: 11/10/2022]
Abstract
Complexes containing odd-electron Be-Be bonds are still rare until now. Hereby, a series of neutral di-beryllium amidinate complexes containing a Be-Be bond were explored theoretically. The complexes with direct chelation with the Be2 dimer by the bidentate amidinate (AMD) ligands are always corresponding to their global minimum structures. The detailed bonding analyses reveal that the localized electrons of the Be-Be fragment can be adjusted by the amount of AMD ligands because each AMD ligand only takes one electron from the Be2 fragment. Meanwhile, the hybridization of the central Be atom also changes as the number of AMD ligands increases. In particular, the sp3 -hybridized single-electron Be-Be bond is firstly identified in the tri-AMD-ligands-chelated neutral D3h -Be2 (AMD)3 complex, which also possesses the higher stability compared to its monoanionic D3h -Be2 (AMD)3 - and monocationic C3 -Be2 (AMD)3 + analogues. Importantly, our study provides a new approach to obtain a neutral odd-electron Be-Be bond, namely by the use of radical ligands through side-on chelation.
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Affiliation(s)
- Xingman Liu
- Institute of Functional Material Chemistry, Faculty of, Chemistry, National & Local United Engineering Laboratory for, Power Battery, Northeast Normal University, Changchun, 130024, P. R. China
| | - Min Zhang
- Institute of Functional Material Chemistry, Faculty of, Chemistry, National & Local United Engineering Laboratory for, Power Battery, Northeast Normal University, Changchun, 130024, P. R. China
| | - Ronglin Zhong
- Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun, 130023, P. R. China
| | - Shuixing Wu
- Key Laboratory of Electrochemical Energy Storage and, Energy Conversion of Hainan Province, School of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, P. R. China
| | - Yingying Liu
- Institute of Functional Material Chemistry, Faculty of, Chemistry, National & Local United Engineering Laboratory for, Power Battery, Northeast Normal University, Changchun, 130024, P. R. China
| | - Yun Geng
- Institute of Functional Material Chemistry, Faculty of, Chemistry, National & Local United Engineering Laboratory for, Power Battery, Northeast Normal University, Changchun, 130024, P. R. China
| | - Zhongmin Su
- Institute of Functional Material Chemistry, Faculty of, Chemistry, National & Local United Engineering Laboratory for, Power Battery, Northeast Normal University, Changchun, 130024, P. R. China
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Kalita AJ, Rohman SS, Kashyap C, Ullah SS, Mazumder LJ, Guha AK. Theoretical Prediction of a Neutral Zero‐Valent Beryllium Compound Isoelectronic with Singlet Carbenes. ChemistrySelect 2020. [DOI: 10.1002/slct.202002415] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Amlan J. Kalita
- Advanced Computational Chemistry CentreDepartment of ChemistryCotton University, Panbazar, Guwahati Assam INDIA- 781001
| | - Shahnaz S. Rohman
- Advanced Computational Chemistry CentreDepartment of ChemistryCotton University, Panbazar, Guwahati Assam INDIA- 781001
| | - Chayanika Kashyap
- Advanced Computational Chemistry CentreDepartment of ChemistryCotton University, Panbazar, Guwahati Assam INDIA- 781001
| | - Sabnam S. Ullah
- Advanced Computational Chemistry CentreDepartment of ChemistryCotton University, Panbazar, Guwahati Assam INDIA- 781001
| | - Lakhya J. Mazumder
- Advanced Computational Chemistry CentreDepartment of ChemistryCotton University, Panbazar, Guwahati Assam INDIA- 781001
| | - Ankur K. Guha
- Advanced Computational Chemistry CentreDepartment of ChemistryCotton University, Panbazar, Guwahati Assam INDIA- 781001
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Kalita AJ, Rohman SS, Kashyap C, Ullah SS, Chakraborty A, Guha AK. In Silico Search for Boron‐Beryllium Dative Bond. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000205] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Amlan Jyoti Kalita
- Advanced Computational Chemistry Centre Department of Chemistry Cotton University ‐781001 Guwahati Assam India
| | - Shahnaz S. Rohman
- Advanced Computational Chemistry Centre Department of Chemistry Cotton University ‐781001 Guwahati Assam India
| | - Chayanika Kashyap
- Advanced Computational Chemistry Centre Department of Chemistry Cotton University ‐781001 Guwahati Assam India
| | - Sabnam S. Ullah
- Advanced Computational Chemistry Centre Department of Chemistry Cotton University ‐781001 Guwahati Assam India
| | - Antara Chakraborty
- Department of Chemical Sciences Tezpur University 784028 Napaam Assam India
| | - Ankur K. Guha
- Advanced Computational Chemistry Centre Department of Chemistry Cotton University ‐781001 Guwahati Assam India
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De S, Sabu G, Zacharias M. Molecular mechanism of Be2+-ion binding to HLA-DP2: tetrahedral coordination, conformational changes and multi-ion binding. Phys Chem Chem Phys 2020; 22:799-810. [DOI: 10.1039/c9cp05695e] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Be small and positive: the smaller size and higher charge of the Be2+-ion results in strong binding between the M2 peptide and the β-chain of HLA-DP2, which induces conformational changes at the periphery suitable for TCR binding.
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Affiliation(s)
- Susmita De
- Department of Applied Chemistry
- Cochin University of Science and Technology
- Kochi 682 022
- India
- Inter University Centre for Nanomaterials and Devices (IUCND)
| | - Gopika Sabu
- Department of Applied Chemistry
- Cochin University of Science and Technology
- Kochi 682 022
- India
| | - Martin Zacharias
- Physics Department
- Technical University of Munich
- Garching 85747
- Germany
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Rohman SS, Kashyap C, Ullah SS, Guha AK, Mazumder LJ, Sharma PK. Ultra-Weak Metal−Metal Bonding: Is There a Beryllium-Beryllium Triple Bond? Chemphyschem 2019; 20:516-518. [DOI: 10.1002/cphc.201900051] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 01/23/2019] [Indexed: 11/07/2022]
Affiliation(s)
- Shahnaz S. Rohman
- Department of Chemistry; Cotton University; Panbazar, Guwahati, Assam INDIA- 781001
| | - Chayanika Kashyap
- Department of Chemistry; Cotton University; Panbazar, Guwahati, Assam INDIA- 781001
| | - Sabnam S. Ullah
- Department of Chemistry; Cotton University; Panbazar, Guwahati, Assam INDIA- 781001
| | - Ankur K. Guha
- Department of Chemistry; Cotton University; Panbazar, Guwahati, Assam INDIA- 781001
| | - Lakhya J. Mazumder
- Department of Chemistry; Cotton University; Panbazar, Guwahati, Assam INDIA- 781001
| | - Pankaz. K. Sharma
- Department of Chemistry; Cotton University; Panbazar, Guwahati, Assam INDIA- 781001
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Liu X, Zhang M, Yu S, Geng Y, Zhang X, Ding Y, Su Z. Beryllium–beryllium double-π bonds in the octahedral cluster of Be2(μ2-X)4 (X = Li, Cu, BeF). Phys Chem Chem Phys 2018; 20:23898-23902. [DOI: 10.1039/c8cp04600j] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Double πBe–Be bonds formed by the help of s1-type electron donating ligand.
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Affiliation(s)
- Xingman Liu
- Institute of Functional Material Chemistry
- Faculty of Chemistry & National & Local United Engineering Laboratory for Power Battery
- Northeast Normal University
- Changchun 130024
- P. R. China
| | - Min Zhang
- Institute of Functional Material Chemistry
- Faculty of Chemistry & National & Local United Engineering Laboratory for Power Battery
- Northeast Normal University
- Changchun 130024
- P. R. China
| | - Shuang Yu
- Laboratory of Theoretical and Computational Chemistry
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Yun Geng
- Institute of Functional Material Chemistry
- Faculty of Chemistry & National & Local United Engineering Laboratory for Power Battery
- Northeast Normal University
- Changchun 130024
- P. R. China
| | - Xingxing Zhang
- Institute of Functional Material Chemistry
- Faculty of Chemistry & National & Local United Engineering Laboratory for Power Battery
- Northeast Normal University
- Changchun 130024
- P. R. China
| | - Yihong Ding
- Laboratory of Theoretical and Computational Chemistry
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Zhongmin Su
- Institute of Functional Material Chemistry
- Faculty of Chemistry & National & Local United Engineering Laboratory for Power Battery
- Northeast Normal University
- Changchun 130024
- P. R. China
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Bayram M, Naglav D, Wölper C, Schulz S. Syntheses and Structures of Homo- and Heteroleptic Beryllium Complexes Containing N,N′-Chelating Ligands. Organometallics 2017. [DOI: 10.1021/acs.organomet.6b00865] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Melike Bayram
- Institute of Inorganic Chemistry
and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, 45117 Essen, Germany
| | - Dominik Naglav
- Institute of Inorganic Chemistry
and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, 45117 Essen, Germany
| | - Christoph Wölper
- Institute of Inorganic Chemistry
and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, 45117 Essen, Germany
| | - Stephan Schulz
- Institute of Inorganic Chemistry
and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, 45117 Essen, Germany
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Bayram M, Naglav D, Wölper C, Schulz S. Synthesis and Structure of Bis(diphenylphosphinimino)methanide and Bis(diphenylphosphinimino)methanediide Beryllium Complexes. Organometallics 2016. [DOI: 10.1021/acs.organomet.6b00380] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Melike Bayram
- Institute
of Inorganic Chemistry, University of Duisburg-Essen, 45117 Essen, Germany
| | - Dominik Naglav
- Institute
of Inorganic Chemistry, University of Duisburg-Essen, 45117 Essen, Germany
| | - Christoph Wölper
- Institute
of Inorganic Chemistry, University of Duisburg-Essen, 45117 Essen, Germany
| | - Stephan Schulz
- Institute
of Inorganic Chemistry, University of Duisburg-Essen, 45117 Essen, Germany
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