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Bassanini I, Parapini S, Basilico N, Taramelli D, Romeo S. From DC18 to MR07: A Metabolically Stable 4,4'-Oxybisbenzoyl Amide as a Low-Nanomolar Growth Inhibitor of P. falciparum. ChemMedChem 2022; 17:e202200355. [PMID: 36089546 PMCID: PMC9827966 DOI: 10.1002/cmdc.202200355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 09/02/2022] [Indexed: 01/12/2023]
Abstract
To improve the metabolic stability of a 4,4'-oxybisbenzoyl-based novel and potent (nanomolar-range IC50 ) antiplasmodial agent previously described by us, in silico-guided structure-activity relationship (SAR) campaigns have been conducted to substitute its peptide decorations with more metabolically stable residues. The effects of the various structural modifications were then correlated with the antiplasmodial activity in vitro in phenotypic assays. Among the several derivatives synthetized and compared with the 3D-pharmacophoric map of the original lead, a novel compound, characterized by a western tert-butyl glycine residue and an eastern 1S,2S-aminoacyclohexanol, showed low-nanomolar-range antiplasmodial activity, no signs of cross-resistance and, most importantly, 47-fold improved Phase I metabolic stability when incubated with human liver microsomes. These results highlight the efficacy of in silico-guided SAR campaigns which will allow us to further optimize the structure of the new lead aiming at testing its efficacy in vivo using different routes of administration.
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Affiliation(s)
- Ivan Bassanini
- Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”Consiglio Nazionale delle RicercheVia Mario Bianco 920131MilanoItaly
- Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria NetworkVia Festa del Perdono 720122MilanoItaly
| | - Silvia Parapini
- Dipartimento di Scienze Biomediche per la SaluteUniversità degli Studi di MilanoVia Pascal 3620133MilanoItaly
- Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria NetworkVia Festa del Perdono 720122MilanoItaly
| | - Nicoletta Basilico
- Dipartimento di Scienze Biomediche, Chirurgiche e OdontoiatricheUniversità degli Studi di MilanoVia Pascal 3620133MilanoItaly
- Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria NetworkVia Festa del Perdono 720122MilanoItaly
| | - Donatella Taramelli
- Dipartimento di Scienze Farmacologiche e BiomolecolariUniversità degli Studi di MilanoVia Pascal 3620133MilanoItaly
- Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria NetworkVia Festa del Perdono 720122MilanoItaly
| | - Sergio Romeo
- Dipartimento di Scienze FarmaceuticheUniversità degli Studi di MilanoVia Mangiagalli 2520133MilanoItaly
- Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria NetworkVia Festa del Perdono 720122MilanoItaly
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Veale CGL. Into the Fray! A Beginner's Guide to Medicinal Chemistry. ChemMedChem 2021; 16:1199-1225. [PMID: 33591595 DOI: 10.1002/cmdc.202000929] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Indexed: 12/31/2022]
Abstract
Modern medicinal chemistry is a complex, multidimensional discipline that operates at the interface of the chemical and biological sciences. The medicinal chemistry contribution to drug discovery is typically described in the context of the well-recited linear progression of the drug discovery pipeline. However, compound optimization is idiosyncratic to each project, and clear definitions of hit and lead molecules and the subsequent progress along the pipeline becomes easily blurred. In addition, this description lacks insight into the entangled relationship between chemical and pharmacological properties, and thus provides limited guidance on how innovative medicinal chemistry strategies can be applied to solve optimization problems, regardless of the stage in the pipeline. Through discussion and illustrative examples, this article seeks to provide insights into the finesse of medicinal chemistry and the subtlety of balancing chemical properties pharmacology. In so doing, it aims to serve as an accessible and simple-to-digest guide for anyone who wishes to learn about the underlying principles of medicinal chemistry, in a context that has been decoupled from the pipeline description.
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Affiliation(s)
- Clinton G L Veale
- School of Chemistry and Physics, Pietermaritzburg Campus, University of KwaZulu-Natal, Private Bag X01, Pietermaritzburg, Scottsville, 3209, South Africa
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Bassanini I, Parapini S, Galli C, Vaiana N, Pancotti A, Basilico N, Taramelli D, Romeo S. Discovery and Pharmacophore Mapping of a Low-Nanomolar Inhibitor of P. falciparum Growth. ChemMedChem 2019; 14:1982-1994. [PMID: 31665565 DOI: 10.1002/cmdc.201900526] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 10/04/2019] [Indexed: 11/06/2022]
Abstract
The treatment of malaria, the most common parasitic disease worldwide and the third deadliest infection after HIV and tuberculosis, is currently compromised by the dramatic increase and diffusion of drug resistance among the various species of Plasmodium, especially P. falciparum (Pf). In this view, the development of new antiplasmodial agents that are able to act via innovative mechanisms of action, is crucial to ensure efficacious antimalarial treatments. In one of our previous communications, we described a novel class of compounds endowed with high antiplasmodial activity, characterized by a pharmacophore never described before as antiplasmodial and identified by their 4,4'-oxybisbenzoyl amide cores. Here, through a detailed structure-activity relationship (SAR) study, we thoroughly investigated the chemical features of the reported scaffolds and successfully built a novel antiplasmodial agent active on both chloroquine (CQ)-sensitive and CQ-resistant Pf strains in the low nanomolar range, without displaying cross-resistance. Moreover, we conducted an in silico pharmacophore mapping.
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Affiliation(s)
- Ivan Bassanini
- Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via Mangiagalli 25, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Silvia Parapini
- Dipartimento di Scienze Biomediche, Chirurgiche e Odontoiatriche, Università degli Studi di Milano, Via Pascal, 36, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Corinna Galli
- Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via Mangiagalli 25, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Nadia Vaiana
- Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via Mangiagalli 25, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Andrea Pancotti
- Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via Mangiagalli 25, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Nicoletta Basilico
- Dipartimento di Scienze Biomediche, Chirurgiche e Odontoiatriche, Università degli Studi di Milano, Via Pascal, 36, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Donatella Taramelli
- Dipartimento di Scienze Farmacologiche e Biomolecolari, Università degli Studi di Milano, Via Pascal 36, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
| | - Sergio Romeo
- Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via Mangiagalli 25, 20133, Milan, Italy.,Centro Interuniversitario di Ricerca sulla Malaria-Italian Malaria Network
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Li X, Li YL, Chen Y, Zou Y, Zhuo XB, Wu QY, Zhao QJ, Hu HG. A silver-promoted solid-phase guanidylation process enables the first total synthesis of stictamide A. RSC Adv 2015. [DOI: 10.1039/c5ra20976e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
First total synthesis of stictamide A, a structurally unique peptide with a statine motif and a N-prenyl modified arginine in the side chain, is disclosed with a novel silver-promoted solid-phase strategy for the first time.
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Affiliation(s)
- Xiang Li
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Yu-lei Li
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Yan Chen
- Department of Pharmacy
- General Hospital of Beijing Military Region
- Beijing 100700
- China
| | - Yan Zou
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Xiao-bin Zhuo
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Qiu-ye Wu
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Qing-jie Zhao
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
| | - Hong-gang Hu
- Department of Organic Chemistry
- School of Pharmacy
- Second Military Medical University
- Shanghai 200433
- China
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