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Sestito JM, Harris TAL, Wang Y. Structural descriptor and surrogate modeling for design of biodegradable scaffolds. J Mech Behav Biomed Mater 2024; 152:106415. [PMID: 38301521 DOI: 10.1016/j.jmbbm.2024.106415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 12/29/2023] [Accepted: 01/20/2024] [Indexed: 02/03/2024]
Abstract
Biodegradable scaffolds are important to regenerative medicine in that they provide an amicable environment for tissue regrowth. However, establishing structure-property (SP) relationships for scaffold design is challenging due to the complexity of the three-dimensional porous scaffold geometry. The complexity requires high-dimensional geometric descriptors. The training of such a SP surrogate model will need a large amount of experimental or simulation data. In this work, a schema of constructing SP relationship surrogates is developed to predict the degraded mechanical properties from the initial scaffold geometry. A new structure descriptor, the extended surfacelet transform (EST), is proposed to capture important details of pores associated with the degradation of scaffolds. The efficiency is further enhanced with principal component analysis to reduce the high-dimensional EST data into a low-dimensional representation. The schema also includes a kinetic Monte Carlo biodegradation model to simulate the biodegradation of polymer scaffolds and to generate the training data for the formation of SP relationships. The schema is demonstrated with the design of polycaprolactone biodegradable scaffolds by connecting the initial scaffold geometry to the degraded compressive modulus.
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Affiliation(s)
- Jesse M Sestito
- College of Engineering, Valparaiso University, Valparaiso, IN, 46383, USA.
| | - Tequila A L Harris
- George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Yan Wang
- George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA, 30332, USA
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2
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Mao S, Wang Z, Luo Q, Lu B, Wang Y. Geometric and Electronic Effects in Hydrogenation Reactions. ACS Catal 2022. [DOI: 10.1021/acscatal.2c05141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Shanjun Mao
- Advanced Materials and Catalysis Group, Center of Chemistry for Frontier Technologies, State Key Laboratory of Clean Energy Utilization, Institute of Catalysis, Department of Chemistry, Zhejiang University, Hangzhou310028, People’s Republic of China
| | - Zhe Wang
- Advanced Materials and Catalysis Group, Center of Chemistry for Frontier Technologies, State Key Laboratory of Clean Energy Utilization, Institute of Catalysis, Department of Chemistry, Zhejiang University, Hangzhou310028, People’s Republic of China
| | - Qian Luo
- Advanced Materials and Catalysis Group, Center of Chemistry for Frontier Technologies, State Key Laboratory of Clean Energy Utilization, Institute of Catalysis, Department of Chemistry, Zhejiang University, Hangzhou310028, People’s Republic of China
| | - Bing Lu
- Advanced Materials and Catalysis Group, Center of Chemistry for Frontier Technologies, State Key Laboratory of Clean Energy Utilization, Institute of Catalysis, Department of Chemistry, Zhejiang University, Hangzhou310028, People’s Republic of China
| | - Yong Wang
- Advanced Materials and Catalysis Group, Center of Chemistry for Frontier Technologies, State Key Laboratory of Clean Energy Utilization, Institute of Catalysis, Department of Chemistry, Zhejiang University, Hangzhou310028, People’s Republic of China
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3
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Shi L, Qi W, Liu W, Yan P, Li F, Sun J, Su D. Carbon nitride modified nanocarbon materials as efficient non-metallic catalysts for alkane dehydrogenation. Catal Today 2018. [DOI: 10.1016/j.cattod.2017.03.047] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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4
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Sun X, Han P, Li B, Mao S, Liu T, Ali S, Lian Z, Su D. Oxidative dehydrogenation reaction of short alkanes on nanostructured carbon catalysts: a computational account. Chem Commun (Camb) 2018; 54:864-875. [DOI: 10.1039/c7cc06941c] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
We aim to provide an overview of the current status and recent achievements of computational studies of the ODH reaction on nanostructured carbon catalysts.
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Affiliation(s)
- XiaoYing Sun
- Institute of Catalysis for Energy and Environment
- College of Chemistry and Chemical Engineering
- Shenyang Normal University
- Shenyang 110034
- China
| | - Peng Han
- Institute of Catalysis for Energy and Environment
- College of Chemistry and Chemical Engineering
- Shenyang Normal University
- Shenyang 110034
- China
| | - Bo Li
- Shenyang National Laboratory for Materials Science
- Institute of Metal Research
- Chinese Academy of Sciences
- Shenyang 110016
- China
| | - ShanJun Mao
- Shenyang National Laboratory for Materials Science
- Institute of Metal Research
- Chinese Academy of Sciences
- Shenyang 110016
- China
| | - TianFu Liu
- Shenyang National Laboratory for Materials Science
- Institute of Metal Research
- Chinese Academy of Sciences
- Shenyang 110016
- China
| | - Sajjad Ali
- Shenyang National Laboratory for Materials Science
- Institute of Metal Research
- Chinese Academy of Sciences
- Shenyang 110016
- China
| | - Zan Lian
- Shenyang National Laboratory for Materials Science
- Institute of Metal Research
- Chinese Academy of Sciences
- Shenyang 110016
- China
| | - DangSheng Su
- Shenyang National Laboratory for Materials Science
- Institute of Metal Research
- Chinese Academy of Sciences
- Shenyang 110016
- China
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5
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Liu W, Chen B, Duan X, Wu KH, Qi W, Guo X, Zhang B, Su D. Molybdenum Carbide Modified Nanocarbon Catalysts for Alkane Dehydrogenation Reactions. ACS Catal 2017. [DOI: 10.1021/acscatal.7b01905] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Wei Liu
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, 72 Wenhua Road, Shenyang 110016, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Bingxu Chen
- State
Key Laboratory of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China
| | - Xuezhi Duan
- State
Key Laboratory of Chemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R. China
| | - Kuang-Hsu Wu
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, 72 Wenhua Road, Shenyang 110016, P. R. China
- School
of Chemical Engineering, The University of New South Wales, Sydney, NSW 2052, Australia
| | - Wei Qi
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, 72 Wenhua Road, Shenyang 110016, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Xiaoling Guo
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, 72 Wenhua Road, Shenyang 110016, P. R. China
| | - Bingsen Zhang
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, 72 Wenhua Road, Shenyang 110016, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Dangsheng Su
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, 72 Wenhua Road, Shenyang 110016, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
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6
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Liu T, Ali S, Li B, Su DS. Revealing the Role of sp2@sp3 Structure of Nanodiamond in Direct Dehydrogenation: Insight from DFT study. ACS Catal 2017. [DOI: 10.1021/acscatal.6b03619] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- TianFu Liu
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016, Liaoning, People’s Republic of China
- School
of Materials Science and Engineering, University of Science and Technology of China, Hefei 230026, Anhui, People’s Republic of China
| | - Sajjad Ali
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016, Liaoning, People’s Republic of China
- University of Chinese Academy of Sciences, Shijingshan
District, Beijing 100049, People’s Republic of China
| | - Bo Li
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016, Liaoning, People’s Republic of China
| | - Dang Sheng Su
- Shenyang
National Laboratory for Materials Science, Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016, Liaoning, People’s Republic of China
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7
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Sun X, Li B, Su D. The Unexpected Reactivity of the Carbon Sites on the Nanostructured Carbon Catalysts towards the C−H Bond Activation from the Analysis of the Aromaticity. Chem Asian J 2016; 11:1668-71. [DOI: 10.1002/asia.201600222] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Indexed: 11/05/2022]
Affiliation(s)
- XiaoYing Sun
- Institute of Catalysis for Energy and Environment; ShenYang Normal University; ShenYang 110034 China
| | - Bo Li
- ShenYang National Laboratory for Materials Science; Institute of Metal Research; Chinese Academy of Sciences; WenHua Road 72 ShenYang 110016 China
| | - DangSheng Su
- ShenYang National Laboratory for Materials Science; Institute of Metal Research; Chinese Academy of Sciences; WenHua Road 72 ShenYang 110016 China
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