1
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Liu J, Ni S, Pan X. Interaction of Glutamic Acid/Protonated Glutamic Acid with Amide and Water Molecules: A Theoretical Study. J Phys Chem A 2022; 126:7750-7762. [PMID: 36253764 DOI: 10.1021/acs.jpca.2c05135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Amino acids are important nitrogen-containing compounds and organic carbon components that exist widely in the atmosphere. The formation of atmospheric aerosols is affected by their interactions with amides. The dimers formed by glutamic acid (Glu) or protonated glutamic acid (Glu+) with three kinds of amide molecules (formamide FA, acetamide AA, urea U) and the hydrated clusters formed by Glu or Glu+, U molecules along with one to six water molecules were systematically studied at the M06-2X/6-311++G(3df,3pd) level. U is predicted to form a more stable structure with Glu/Glu+ than FA and AA by thermodynamics. If the concentration ratio of FA to U is less than 104, U will play a critical role in NPF. The degree of hydration in Glu+-mU-nW is higher than that of Glu-mU-nW (m = 0, 1; n = 0-6) clusters. Notably, Glu contributes more to the Rayleigh scattering properties than glutaric acid and sulfuric acid, and thus may lead to the destruction of atmospheric visibility. This study is helpful to better understand the properties of organic aerosols containing amino acids or amides.
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Affiliation(s)
- Jia Liu
- Institute of Functional Material Chemistry, National & Local United Engineering Lab for Power Battery, Faculty of Chemistry, Northeast Normal University, Changchun130024, People's Republic of China
| | - Shuang Ni
- Institute of Catalysis for Energy and Environment, College of Chemistry and Chemical Engineering, Shenyang Normal University, Shenyang110034, People's Republic of China
| | - Xiumei Pan
- Institute of Functional Material Chemistry, National & Local United Engineering Lab for Power Battery, Faculty of Chemistry, Northeast Normal University, Changchun130024, People's Republic of China
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2
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Chen J. Theoretical analysis of sulfuric acid–dimethylamine–oxalic acid–water clusters and implications for atmospheric cluster formation. RSC Adv 2022; 12:22425-22434. [PMID: 36106005 PMCID: PMC9364903 DOI: 10.1039/d2ra03492a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 08/03/2022] [Indexed: 11/21/2022] Open
Abstract
In recent years, organic compounds potentially involved in atmospheric particle formation have received increased attention. However, the contributions of organic acids as precursors in nucleation remain ambiguous. In this study, the low-lying structures and thermodynamics of the sulfuric acid–dimethylamine–oxalic acid–water system are obtained at the M06-2X/6-311+G(2d,p) level, and the single point energy of the clusters has been calculated at the DF-LMP2-F12/VDZ-F12 level. The formations of the multicomponent clusters are predicted based on thermodynamics, involving proton transfer and hydrogen bonding interactions. Oxalic acid can synergistically promote the formation of the sulfuric acid–dimethylamine–oxalic acid–water system while inhibiting this with the addition of more sulfuric acid molecules. The results of hydrate distribution show that un-hydrate clusters play a dominant role during formation. Moreover, dimethylamine and oxalic acid have similar effects on Rayleigh scattering properties, and the clusters involving complex mixtures of compounds can have high optical activities. The structure of SA2.DMA.OA.W4 cluster.![]()
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Affiliation(s)
- Jiao Chen
- Anhui Meteorological Observatory, Hefei, Anhui 230031, China
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3
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Chen J. Studies on the conformation, thermodynamics, and evaporation rate characteristics of sulfuric acid and amines molecular clusters. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022] Open
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4
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Vibrational study of methylamine dimer and hydrated methylamine complexes in solid neon supported by ab initio calculations. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130308] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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5
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Ni S, Bai FY, Pan XM. Atmospheric chemistry of thiourea: nucleation with urea and roles in NO2 hydrolysis. Phys Chem Chem Phys 2020; 22:8109-8117. [DOI: 10.1039/c9cp04300d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The nucleation with urea and roles in NO2 hydrolysis in the presence of thiourea.
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Affiliation(s)
- Shuang Ni
- Institute of Functional Material Chemistry
- National & Local United Engineering Lab for Power Battery
- Faculty of Chemistry
- Northeast Normal University
- Changchun 130024
| | - Feng-Yang Bai
- Institute of Catalysis for Energy and Environment
- College of Chemistry and Chemical Engineering
- Shenyang Normal University
- Shenyang
- People's Republic of China
| | - Xiu-Mei Pan
- Institute of Functional Material Chemistry
- National & Local United Engineering Lab for Power Battery
- Faculty of Chemistry
- Northeast Normal University
- Changchun 130024
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6
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Ni S, Bai FY, Pan XM. Can nitrous acid contribute to atmospheric new particle formation from nitric acid and water? NEW J CHEM 2020. [DOI: 10.1039/d0nj02992k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The properties of (HNO3)(HONO)(H2O)n (n = 1–6) clusters are reported including thermodynamics, structures, temperature-dependence, intermolecular forces, optical properties, and evaporation rates.
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Affiliation(s)
- Shuang Ni
- Institute of Functional Material Chemistry
- National & Local United Engineering Lab for Power Battery
- Faculty of Chemistry
- Northeast Normal University
- Changchun 130024
| | - Feng-Yang Bai
- Institute of Catalysis for Energy and Environment
- College of Chemistry and Chemical Engineering
- Shenyang Normal University
- Shenyang
- People's Republic of China
| | - Xiu-Mei Pan
- Institute of Functional Material Chemistry
- National & Local United Engineering Lab for Power Battery
- Faculty of Chemistry
- Northeast Normal University
- Changchun 130024
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7
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Han YJ, Feng YJ, Miao SK, Jiang S, Liu YR, Wang CY, Chen J, Wang ZQ, Huang T, Li J, Huang W. Hydration of 3-hydroxy-4,4-dimethylglutaric acid with dimethylamine complex and its atmospheric implications. Phys Chem Chem Phys 2018; 20:25780-25791. [DOI: 10.1039/c8cp04029j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Changes in temperature affects the distribution of isomers, which facilitates the understanding of new particle formation in the atmosphere.
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8
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Miao SK, Jiang S, Peng XQ, Liu YR, Feng YJ, Wang YB, Zhao F, Huang T, Huang W. Hydration of the methanesulfonate–ammonia/amine complex and its atmospheric implications. RSC Adv 2018; 8:3250-3263. [PMID: 35541186 PMCID: PMC9077587 DOI: 10.1039/c7ra12064h] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 12/28/2017] [Indexed: 11/30/2022] Open
Abstract
Methanesulfonate (MSA−), found in substantial concentrations in the atmosphere, is expected to enhance aerosol nucleation and the growth of nanoparticles, but the details of methanesulfonate clusters are poorly understood. In this study, MSA− was chosen along with ammonia (NH3) or three common amines and water (H2O) to discuss the roles of ternary homogeneous nucleation and ion-induced nucleation in aerosol formation. We studied the structural characteristics and thermodynamics of the clusters using density functional theory at the PW91PW91/6-311++G(3df,3pd) level. The analysis of noncovalent interactions predicts that the amines can form more stable clusters with MSA− than NH3, in agreement with the results from structures and thermodynamics; however, the enhancement in stability for amines is not large enough to overcome the difference in the concentrations of NH3 and amines under typical atmospheric conditions. In addition, the favorable free energies of formation for the (MSA−)(NH3/amines)(H2O)n (n = 0–3) clusters at 298.15 K show that MSA− could contribute to the aerosol nucleation process with binding NH3/amines and H2O up to n = 3. There are strong temperature and humidity dependences for the formation of complexes; higher humidity and temperature promote the formation of larger hydrates. Finally, for the (MSA−)(NH3/amines)(H2O)n clusters, the evaporation rates were determined to further investigate the atmospheric implications. Methanesulfonate (MSA−), found in substantial concentrations in the atmosphere, is expected to enhance aerosol nucleation and the growth of nanoparticles, but the details of methanesulfonate clusters are poorly understood.![]()
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Affiliation(s)
- Shou-Kui Miao
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Shuai Jiang
- School of Information Science and Technology
- University of Science and Technology of China
- Hefei
- China
| | - Xiu-Qiu Peng
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Yi-Rong Liu
- School of Information Science and Technology
- University of Science and Technology of China
- Hefei
- China
| | - Ya-Juan Feng
- School of Information Science and Technology
- University of Science and Technology of China
- Hefei
- China
| | - Yan-Bing Wang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Feng Zhao
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Teng Huang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Wei Huang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
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9
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Chen J, Jiang S, Liu YR, Huang T, Wang CY, Miao SK, Wang ZQ, Zhang Y, Huang W. Interaction of oxalic acid with dimethylamine and its atmospheric implications. RSC Adv 2017. [DOI: 10.1039/c6ra27945g] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Oxalic acid and dimethylamine are the most common organic acid and base in the atmosphere, and are recognized as significant precursor species in atmospheric new particle formation.
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Affiliation(s)
- Jiao Chen
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Shuai Jiang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Yi-Rong Liu
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Teng Huang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Chun-Yu Wang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Shou-Kui Miao
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Zhong-Quan Wang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Yang Zhang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Wei Huang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
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10
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Partanen L, Hänninen V, Halonen L. Effects of Global and Local Anharmonicities on the Thermodynamic Properties of Sulfuric Acid Monohydrate. J Chem Theory Comput 2016; 12:5511-5524. [PMID: 27662456 DOI: 10.1021/acs.jctc.6b00683] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We use state-of-the-art electronic structure calculation methods and large basis sets to obtain reliable values for the thermodynamic properties of sulfuric acid monohydrate and study the effects of vibrational anharmonicity on these properties. We distinguish between two forms of vibrational anharmonicity: local anharmonicity, which refers to the anharmonicity of the vibrational modes of a given cluster conformer, and global anharmonicity, which originates from accounting for the presence of different conformers in the first place. In our most accurate approach, we solve the nuclear Schrödinger equation variationally for the intermolecular large-amplitude motions, thus quantum-mechanically accounting for the presence of higher-energy conformers for both reactants and products, while using the standard vibrational perturbational approach for the other vibrational modes. This results in a value of -11.0 kJ/mol for the reaction Gibbs free energy at 298.15 K. When standard vibrational perturbational approaches are employed, the effects of local anharmonicity depend heavily on the choice of the electronic structure calculation basis set. In fact, better results can often be achieved by combining a simple harmonic treatment for the vibrational partition function with a statistical mechanical accounting of global anharmonicity. Thus, we recommend that future studies that intend to include anharmonicity start by accounting for the presence of higher-energy conformers and only then consider whether local anharmonicity calculations are feasible and necessary.
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Affiliation(s)
- Lauri Partanen
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki , P.O. Box 55, A.I. Virtasen aukio 1, FIN-00014 Helsinki, Finland
| | - Vesa Hänninen
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki , P.O. Box 55, A.I. Virtasen aukio 1, FIN-00014 Helsinki, Finland
| | - Lauri Halonen
- Laboratory of Physical Chemistry, Department of Chemistry, University of Helsinki , P.O. Box 55, A.I. Virtasen aukio 1, FIN-00014 Helsinki, Finland
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11
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Partanen L, Vehkamäki H, Hansen K, Elm J, Henschel H, Kurtén T, Halonen R, Zapadinsky E. Effect of Conformers on Free Energies of Atmospheric Complexes. J Phys Chem A 2016; 120:8613-8624. [DOI: 10.1021/acs.jpca.6b04452] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Lauri Partanen
- Laboratory
of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland
| | - Hanna Vehkamäki
- Department
of Physics, University of Helsinki, P.O. Box 64 (Gustaff Hällströmin
katu 2a), FIN-00014 University of Helsinki, Finland
| | - Klavs Hansen
- Tianjin
International Center of Nanoparticles and Nanosystems, Tianjin University, 92 Weijin Road, Nankai district, Tianjin 300072, P. R. China
- Department
of Physics, University of Gothenburg, 41296 Gothenburg, Sweden
| | - Jonas Elm
- Department
of Physics, University of Helsinki, P.O. Box 64 (Gustaff Hällströmin
katu 2a), FIN-00014 University of Helsinki, Finland
| | - Henning Henschel
- Department
of Physics, University of Helsinki, P.O. Box 64 (Gustaff Hällströmin
katu 2a), FIN-00014 University of Helsinki, Finland
| | - Theo Kurtén
- Laboratory
of Physical Chemistry, Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland
| | - Roope Halonen
- Department
of Physics, University of Helsinki, P.O. Box 64 (Gustaff Hällströmin
katu 2a), FIN-00014 University of Helsinki, Finland
| | - Evgeni Zapadinsky
- Department
of Physics, University of Helsinki, P.O. Box 64 (Gustaff Hällströmin
katu 2a), FIN-00014 University of Helsinki, Finland
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12
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Harczuk I, Vahtras O, Ågren H. Modeling Rayleigh Scattering of Aerosol Particles. J Phys Chem B 2016; 120:4296-301. [DOI: 10.1021/acs.jpcb.6b02278] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ignat Harczuk
- School of Biotechnology,
Division of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Olav Vahtras
- School of Biotechnology,
Division of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Hans Ågren
- School of Biotechnology,
Division of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
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13
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Peng XQ, Huang T, Miao SK, Chen J, Wen H, Feng YJ, Hong Y, Wang CY, Huang W. Hydration of oxalic acid–ammonia complex: atmospheric implication and Rayleigh-scattering properties. RSC Adv 2016. [DOI: 10.1039/c6ra03164a] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A previous study of the binary system (H2C2O4)(NH3)n (n = 1–6) suggested that an oxalic acid–ammonia complex may participate in atmospheric aerosol formations.
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Affiliation(s)
- Xiu-Qiu Peng
- School of Environmental Science & Optoelectronic Technology
- University of Science and Technology of China
- Hefei
- China
- Laboratory of Atmospheric Physico-Chemistry
| | - Teng Huang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Shou-Kui Miao
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Jiao Chen
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Hui Wen
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Ya-Juan Feng
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Yu Hong
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Chun-Yu Wang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics & Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Wei Huang
- School of Environmental Science & Optoelectronic Technology
- University of Science and Technology of China
- Hefei
- China
- Laboratory of Atmospheric Physico-Chemistry
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