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Zhao X, Peng H, Hu J, Wang L, Zhang F. Nanotechnology-Enabled PCR with Tunable Energy Dynamics. JACS AU 2024; 4:3370-3382. [PMID: 39328766 PMCID: PMC11423310 DOI: 10.1021/jacsau.4c00570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 08/08/2024] [Accepted: 08/08/2024] [Indexed: 09/28/2024]
Abstract
This Perspective elucidates the transformative impacts of advanced nanotechnology and dynamic energy systems on the polymer chain reaction (PCR), a cornerstone technique in biomedical research and diagnostic applications. Since its invention, the optimization of PCR-specifically its efficiency, specificity, cycling rate, and detection sensitivity-has been a focal point of scientific exploration. Our analysis spans the modulation of PCR from both material and energetic perspectives, emphasizing the intricate interplay between PCR components and externally added entities such as molecules, nanoparticles (NPs), and optical microcavities. We begin with a foundational overview of PCR, detailing the basic principles of PCR modulation through molecular additives to highlight material-level interactions. Then, we delve into how NPs, with their diverse material and surface properties, influence PCR through interface interactions and hydrothermal conduction, drawing parallels to molecular behaviors. Additionally, this Perspective ventures into the energetic regulation of PCR, examining the roles of electromagnetic radiation and optical resonators. We underscore the advanced capabilities of optical technologies in PCR regulation, characterized by their ultrafast, residue-free, and noninvasive nature, alongside label-free detection methods. Notably, optical resonators present a pioneering approach to control PCR processes even in the absence of light, targeting the often-overlooked water component in PCR. By integrating discussions on photocaging and vibrational strong coupling, this review presents innovative methods for the precise regulation of PCR processes, envisioning a new era of PCR technology that enhances both research and clinical diagnostics. The synergy between nanotechnological enhancements and energy dynamics not only enriches our understanding of PCR but also opens new avenues for developing rapid, accurate, and efficient PCR systems. We hope that this Perspective will inspire further innovations in PCR technology and guide the development of next-generation clinical detection instruments.
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Affiliation(s)
- Xinmin Zhao
- Terahertz Technology Innovation Research Institute, Terahertz Spectrum and Imaging Technology Cooperative Innovation Center, Shanghai Key Lab of Modern Optical System, University of Shanghai for Science and Technology, Shanghai 200093, People's Republic of China
| | - Hongzhen Peng
- Institute of Materiobiology, Department of Chemistry, College of Science, Shanghai University, Shanghai 200444, People's Republic of China
| | - Jun Hu
- Institute of Materiobiology, Department of Chemistry, College of Science, Shanghai University, Shanghai 200444, People's Republic of China
| | - Lihua Wang
- Institute of Materiobiology, Department of Chemistry, College of Science, Shanghai University, Shanghai 200444, People's Republic of China
| | - Feng Zhang
- Terahertz Technology Innovation Research Institute, Terahertz Spectrum and Imaging Technology Cooperative Innovation Center, Shanghai Key Lab of Modern Optical System, University of Shanghai for Science and Technology, Shanghai 200093, People's Republic of China
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2
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Hua Z, Tang L, Li L, Wu M, Fu J. Environmental biotechnology and the involving biological process using graphene-based biocompatible material. CHEMOSPHERE 2023; 339:139771. [PMID: 37567262 DOI: 10.1016/j.chemosphere.2023.139771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 05/29/2023] [Accepted: 08/07/2023] [Indexed: 08/13/2023]
Abstract
Biotechnology is a promising approach to environmental remediation but requires improvement in efficiency and convenience. The improvement of biotechnology has been illustrated with the help of biocompatible materials as biocarrier for environmental remediations. Recently, graphene-based materials (GBMs) have become promising materials in environmental biotechnology. To better illustrate the principle and mechanisms of GBM application in biotechnology, the comprehension of the biological response of microorganisms and enzymes when facing the GBMs is needed. The review illustrated distinct GBM-microbe/enzyme composites by providing the GBM-microbe/enzyme interaction and the determining factors. There are diverse GBM modifications for distinct biotechnology applications. Each of these methods and applications depends on the physicochemical properties of GBMs. The applications of these composites were mainly categorized as pollutant adsorption, anaerobic digestion, microbial fuel cells, and organics degradation. Where information was available, the strategies and mechanisms of GBMs in improving application efficacies were also demonstrated. In addition, the biological response, from microbial community changes, extracellular polymeric substances changes to biological pathway alteration, may become important in the application of these composites. Furthermore, we also discuss challenges facing the environmental application of GBMs, considering their fate and toxicity in the ecosystem, and offer potential solutions. This research significantly enhances our comprehension of the fundamental principles, underlying mechanisms, and biological pathways for the in-situ utilization of GBMs.
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Affiliation(s)
- Zilong Hua
- Key Laboratory of Organic Compound Pollution Control Engineering, School of Environmental and Chemical Engineering, Shanghai University, China
| | - Liang Tang
- Key Laboratory of Organic Compound Pollution Control Engineering, School of Environmental and Chemical Engineering, Shanghai University, China.
| | - Liyan Li
- Department of Civil and Environmental Engineering, College of Design and Engineering, National University of Singapore, Singapore
| | - Minghong Wu
- Key Laboratory of Organic Compound Pollution Control Engineering, School of Environmental and Chemical Engineering, Shanghai University, China
| | - Jing Fu
- Key Laboratory of Organic Compound Pollution Control Engineering, School of Environmental and Chemical Engineering, Shanghai University, China.
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3
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Kim BK, Lee SA, Park M, Jeon EJ, Kim MJ, Kim JM, Kim H, Jung S, Kim SK. Ultrafast Real-Time PCR in Photothermal Microparticles. ACS NANO 2022; 16:20533-20544. [PMID: 36475304 PMCID: PMC9799066 DOI: 10.1021/acsnano.2c07017] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 11/07/2022] [Indexed: 05/20/2023]
Abstract
As the turnaround time of diagnosis becomes important, there is an increasing demand for rapid, point-of-care testing (POCT) based on polymerase chain reaction (PCR), the most reliable diagnostic tool. Although optical components in real-time PCR (qPCR) have quickly become compact and economical, conventional PCR instruments still require bulky thermal systems, making it difficult to meet emerging needs. Photonic PCR, which utilizes photothermal nanomaterials as heating elements, is a promising platform for POCT as it reduces power consumption and process time. Here, we develop a photonic qPCR platform using hydrogel microparticles. Microparticles consisting of hydrogel matrixes containing photothermal nanomaterials and primers are dubbed photothermal primer-immobilized networks (pPINs). Reduced graphene oxide is selected as the most suitable photothermal nanomaterial to generate heat in pPIN due to its superior light-to-heat conversion efficiency. The photothermal reaction volume of 100 nL (predefined by the pPIN dimensions) provides fast heating and cooling rates of 22.0 ± 3.0 and 23.5 ± 2.6 °C s-1, respectively, enabling ultrafast qPCR within 5 min only with optical components. The microparticle-based photonic qPCR facilitates multiplex assays by loading multiple encoded pPIN microparticles in a single reaction. As a proof of concept, four-plex pPIN qPCR for bacterial discrimination are successfully demonstrated.
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Affiliation(s)
- Bong Kyun Kim
- Division
of Bio-Medical Science & Technology, KIST School, Korea University of Science and Technology (UST), Daejeon 34113, Korea
- BioActs
Co., Ltd., Incheon 21666, Korea
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
| | - Sang-A Lee
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
| | - Minju Park
- Soft
Hybrid Materials Research Center, KIST, Seoul 02792, Korea
| | - Eui Ju Jeon
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
| | - Mi Jung Kim
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
| | - Jung Min Kim
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
| | - Heesuk Kim
- Soft
Hybrid Materials Research Center, KIST, Seoul 02792, Korea
- Division
of Energy and Environmental Technology, KIST School, UST, Daejeon 34113, Korea
| | - Seungwon Jung
- Center
for Advanced Biomolecular Recognition, KIST, Seoul 02792, Korea
- Department
of HY-KIST Bio-convergence, Hanyang University, Seoul 04763, Korea
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
| | - Sang Kyung Kim
- Center
for Advanced Biomolecular Recognition, KIST, Seoul 02792, Korea
- KHU-KIST
Department of Converging Science and Technology, Kyung Hee University, Seoul 02447, Korea
- Center
for Augmented Safety Systems with Intelligence, Sensing and Tracking
(ASSIST), KIST, Seoul 02792, Korea
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Yang Z, Shen B, Yue L, Miao Y, Hu Y, Ouyang R. Application of Nanomaterials to Enhance Polymerase Chain Reaction. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27248854. [PMID: 36557991 PMCID: PMC9781713 DOI: 10.3390/molecules27248854] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 11/27/2022] [Accepted: 12/05/2022] [Indexed: 12/15/2022]
Abstract
Polymerase Chain Reaction (PCR) is one of the most common technologies used to produce millions of copies of targeted nucleic acid in vitro and has become an indispensable technique in molecular biology. However, it suffers from low efficiency and specificity problems, false positive results, and so on. Although many conditions can be optimized to increase PCR yield, such as the magnesium ion concentration, the DNA polymerases, the number of cycles, and so on, they are not all-purpose and the optimization can be case dependent. Nano-sized materials offer a possible solution to improve both the quality and productivity of PCR. In the last two decades, nanoparticles (NPs) have attracted significant attention and gradually penetrated the field of life sciences because of their unique chemical and physical properties, such as their large surface area and small size effect, which have greatly promoted developments in life science and technology. Additionally, PCR technology assisted by NPs (NanoPCR) such as gold NPs (Au NPs), quantum dots (QDs), and carbon nanotubes (CNTs), etc., have been developed to significantly improve the specificity, efficiency, and sensitivity of PCR and to accelerate the PCR reaction process. This review discusses the roles of different types of NPs used to enhance PCR and summarizes their possible mechanisms.
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Affiliation(s)
- Zhu Yang
- Institute of Bismuth and Rhenium Science, School Materials and Chemistry, University of Shanghai for Science and Technology, Shanghai 200093, China
- Institut Pasteur of Shanghai, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China
| | - Bei Shen
- CAS Key Laboratory of Molecular Virology & Immunology, Institutional Center for Shared Technologies and Facilities, Pathogen Discovery and Big Data Platform, Institute Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai 200031, China
| | - Lihuan Yue
- CAS Key Laboratory of Molecular Virology & Immunology, Institutional Center for Shared Technologies and Facilities, Pathogen Discovery and Big Data Platform, Institute Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai 200031, China
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yuqing Miao
- Institute of Bismuth and Rhenium Science, School Materials and Chemistry, University of Shanghai for Science and Technology, Shanghai 200093, China
- Correspondence: (Y.M.); (Y.H.); (R.O.)
| | - Yihong Hu
- CAS Key Laboratory of Molecular Virology & Immunology, Institutional Center for Shared Technologies and Facilities, Pathogen Discovery and Big Data Platform, Institute Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai 200031, China
- Correspondence: (Y.M.); (Y.H.); (R.O.)
| | - Ruizhuo Ouyang
- Institute of Bismuth and Rhenium Science, School Materials and Chemistry, University of Shanghai for Science and Technology, Shanghai 200093, China
- Correspondence: (Y.M.); (Y.H.); (R.O.)
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5
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Wan J, Zheng L, Kong L, Lu Z, Tao Y, Feng Z, Lv F, Meng F, Bie X. Development of a rapid detection method for real-time fluorescent quantitative PCR of Salmonella spp. and Salmonella Enteritidis in ready-to-eat fruits and vegetables. Lebensm Wiss Technol 2021. [DOI: 10.1016/j.lwt.2021.111837] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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6
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Hu C, Zhang L, Yang Z, Song Z, Zhang Q, He Y. Graphene oxide-based qRT-PCR assay enables the sensitive and specific detection of miRNAs for the screening of ovarian cancer. Anal Chim Acta 2021; 1174:338715. [PMID: 34247740 DOI: 10.1016/j.aca.2021.338715] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 05/27/2021] [Accepted: 05/28/2021] [Indexed: 12/01/2022]
Abstract
Circulating microRNAs (miRNAs) have the potential to become reliable and noninvasive biomarkers for ovarian cancer (OC) diagnosis; however, the conventional miRNAs detection techniques exhibit enduring limitations of low sensitivity and specificity. Graphene oxide (GO), a novel nanomaterial, is at the forefront of material design for extensive biomedical applications. Owing to the excellent water affinity and single-stranded DNA (ssDNA) adsorption characteristics of GO, we designed and developed a GO-based qRT-PCR assay for the detection of miRNAs associated with OC. In the GO-based qRT-PCR system, GO could significantly improve the sensitivity and specificity of the qRT-PCR assay by noncovalently interacting with primers and ssDNA and reducing the occurrence of non-specific amplification. Moreover, the detection of miRNAs associated with OC confirmed that GO-based qRT-PCR assay could differentiate benign ovarian tumors from OC (sensitivity, 0.91; specificity, 1.00). Collectively, these findings provide robust evidence that GO-based qRT-PCR assay can be effectively used as a promising method to detect miRNAs for the screening of OC patients.
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Affiliation(s)
- Chenyan Hu
- State Key Laboratory of Southwestern Chinese Medicine Resources, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, 611137, China
| | - Linlin Zhang
- Department of Gynecology, People's Hospital of Mianzhu City, Deyang, Sichuan, 618200, China
| | - Zhongzhu Yang
- State Key Laboratory of Southwestern Chinese Medicine Resources, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, 611137, China
| | - Zhen Song
- State Key Laboratory of Southwestern Chinese Medicine Resources, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, 611137, China
| | - Qin Zhang
- Department of Gynecology, People's Hospital of Mianzhu City, Deyang, Sichuan, 618200, China
| | - Yang He
- State Key Laboratory of Southwestern Chinese Medicine Resources, College of Medical Technology, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, 611137, China.
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Li S, Wang Z, Wang Y, Song M, Lu G, Dang N, Yin H, Qu Y, Deng Y. Effects of graphene oxide on PCR amplification for microbial community survey. BMC Microbiol 2020; 20:278. [PMID: 32917142 PMCID: PMC7488489 DOI: 10.1186/s12866-020-01965-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Accepted: 09/02/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Graphene oxide (GO) has been suggested as an efficient assistant additive to eliminate non-specific amplification of the polymerase chain reaction (PCR). Although many studies have focused on exploring its molecular mechanism, the practice of GO on the quantitation of microbial community has not been implemented yet. In this study, GO was added in PCR system to explore the changes on removing typical amplification errors, such as chimera and mismatches on two kinds of mock communities (an evenly mixed and a staggered mock communities) and environmental samples. RESULTS High-throughput sequencing of bacterial and fungal communities, based on 16S rRNA genes and internal transcribed spacers (ITS) respectively, showed that GO could significantly increase large segmental error (chimeric sequence) in PCR procedure while had no specific effect on point error (mismatched sequence). Besides, GO reduced the α-diversity of community, and changed the composition of fungal community more obviously than bacterial community. CONCLUSIONS Our study provides the first quantitative data on microbial community level to prove the negative effect of GO, and also indicates that there may be a more complex interaction between GO and comprehensive DNA fragments in PCR process.
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Affiliation(s)
- Shuzhen Li
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.,Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Environmental Science and Technology, Dalian University of Technolog, Dalian, 116024, China
| | - Zhujun Wang
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yuanyuan Wang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Maoyong Song
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Guangxin Lu
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - Ning Dang
- College of Agriculture and Animal Husbandry, Qinghai University, Xining, 810016, China
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Yuanyuan Qu
- Key Laboratory of Industrial Ecology and Environmental Engineering (Ministry of Education), School of Environmental Science and Technology, Dalian University of Technolog, Dalian, 116024, China
| | - Ye Deng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China. .,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
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8
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Luo C, Li Y, Guo L, Zhang F, Liu H, Zhang J, Zheng J, Zhang J, Guo S. Graphene Quantum Dots Downregulate Multiple Multidrug-Resistant Genes via Interacting with Their C-Rich Promoters. Adv Healthc Mater 2017; 6. [PMID: 28748603 DOI: 10.1002/adhm.201700328] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Revised: 06/15/2017] [Indexed: 01/04/2023]
Abstract
Multidrug resistance (MDR) is the major factor in the failure of many forms of chemotherapy, mostly due to the increased efflux of anticancer drugs that mediated by ATP-binding cassette (ABC) transporters. Therefore, inhibiting ABC transporters is one of effective methods of overcoming MDR. However, high enrichment of ABC transporters in cells and their broad substrate spectra made to circumvent MDR are almost insurmountable by a single specific ABC transporter inhibitor. Here, this study demonstrates that graphene quantum dots (GQDs) could downregulate the expressions of P-glycoprotein, multidrug resistance protein MRP1, and breast cancer resistance protein genes via interacting with C-rich regions of their promoters. This is the first example that a single reagent could suppress multiple MDR genes, suggesting that it will be possible to target multiple ABC transporters simultaneously with a single reagent. The inhibitory ability of the GQDs to these drug-resistant genes is validated further by reversing the doxorubicin resistance of MCF-7/ADR cells. Notably, GQDs have superb chemical and physical properties, unique structure, low toxicity, and high biocompatibility; hence, their capability of inhibiting multiple drug-resistant genes holds great potential in cancer therapy.
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Affiliation(s)
- Chao Luo
- State Key Laboratory of Bioreactor Engineering; Shanghai Key Laboratory of New Drug Design; School of Pharmacy; East China University of Science and Technology; 130 Meilong Rd. Shanghai 200237 P. R. China
| | - Yanfang Li
- State Key Laboratory of Bioreactor Engineering; Shanghai Key Laboratory of New Drug Design; School of Pharmacy; East China University of Science and Technology; 130 Meilong Rd. Shanghai 200237 P. R. China
| | - Lijuan Guo
- State Key Laboratory of Bioreactor Engineering; Shanghai Key Laboratory of New Drug Design; School of Pharmacy; East China University of Science and Technology; 130 Meilong Rd. Shanghai 200237 P. R. China
| | - Fangwei Zhang
- School of Electronic Information and Electrical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Rd. Shanghai 200240 P. R. China
| | - Hui Liu
- State Key Laboratory of Bioreactor Engineering; Shanghai Key Laboratory of New Drug Design; School of Pharmacy; East China University of Science and Technology; 130 Meilong Rd. Shanghai 200237 P. R. China
| | - Jiali Zhang
- School of Electronic Information and Electrical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Rd. Shanghai 200240 P. R. China
| | - Jing Zheng
- State Key Laboratory of Bioreactor Engineering; Shanghai Key Laboratory of New Drug Design; School of Pharmacy; East China University of Science and Technology; 130 Meilong Rd. Shanghai 200237 P. R. China
| | - Jingyan Zhang
- State Key Laboratory of Bioreactor Engineering; Shanghai Key Laboratory of New Drug Design; School of Pharmacy; East China University of Science and Technology; 130 Meilong Rd. Shanghai 200237 P. R. China
| | - Shouwu Guo
- School of Electronic Information and Electrical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Rd. Shanghai 200240 P. R. China
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Kim HR, Baek A, Lee IJ, Kim DE. Facilitation of Polymerase Chain Reaction with Poly(ethylene glycol)-Engrafted Graphene Oxide Analogous to a Single-Stranded-DNA Binding Protein. ACS APPLIED MATERIALS & INTERFACES 2016; 8:33521-33528. [PMID: 27960406 DOI: 10.1021/acsami.6b13223] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Polymerase chain reaction (PCR), a versatile DNA amplification method, is a fundamental technology in modern life sciences and molecular diagnostics. After multiple rounds of PCR, however, nonspecific DNA fragments are often produced and the amplification efficiency and fidelity decrease. Here, we demonstrated that poly(ethylene glycol)-engrafted nanosized graphene oxide (PEG-nGO) can significantly improve the PCR specificity and efficiency. PEG-nGO allows the specificity to be maintained even after multiple rounds of PCR, allowing reliable amplification at low annealing temperatures. PEG-nGO decreases the nonspecific annealing of single-stranded DNA (ssDNA), such as primer dimerization and false priming, by adsorbing excess primers. Moreover, PEG-nGO interrupts the reannealing of denatured template DNA by preferentially binding to ssDNA. Thus, PEG-nGO enhances the PCR specificity by preferentially binding to ssDNA without inhibiting DNA polymerase, which is analogous to the role of ssDNA binding proteins.
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Affiliation(s)
- Hyo Ryoung Kim
- Department of Bioscience and Biotechnology, Konkuk University Neundong-ro 120, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Ahruem Baek
- Department of Bioscience and Biotechnology, Konkuk University Neundong-ro 120, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Il Joon Lee
- Department of Bioscience and Biotechnology, Konkuk University Neundong-ro 120, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Dong-Eun Kim
- Department of Bioscience and Biotechnology, Konkuk University Neundong-ro 120, Gwangjin-gu, Seoul 05029, Republic of Korea
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Sui X, Luo C, Wang C, Zhang F, Zhang J, Guo S. Graphene quantum dots enhance anticancer activity of cisplatin via increasing its cellular and nuclear uptake. NANOMEDICINE-NANOTECHNOLOGY BIOLOGY AND MEDICINE 2016; 12:1997-2006. [DOI: 10.1016/j.nano.2016.03.010] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Revised: 03/23/2016] [Accepted: 03/31/2016] [Indexed: 01/26/2023]
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