Recent Advances about the Applications of Click Reaction in Chemical Proteomics

Despite significant advances in biological and analytical approaches, a comprehensive portrait of the proteome and its dynamic interactions and modifications remains a challenging goal. Chemical proteomics is a growing area of chemical biology that seeks to design small molecule probes to elucidate protein composition, distribution, and relevant physiological and pharmacological functions. Click chemistry focuses on the development of new combinatorial chemical methods for carbon heteroatom bond (C-X-C) synthesis, which have been utilized extensively in the field of chemical proteomics. Click reactions have various advantages including high yield, harmless by-products, and simple reaction conditions, upon which the molecular diversity can be easily and effectively obtained. This paper reviews the application of click chemistry in proteomics from four aspects: (1) activity-based protein profiling, (2) enzyme-inhibitors screening, (3) protein labeling and modifications, and (4) hybrid monolithic column in proteomic analysis.

Ternary thiol-ene photopolymerization for facile preparation of ionic liquid-functionalized hybrid monolithic columns based on polyhedral oligomeric silsesquioxanes

A simple thiol-ene photopolymerization approach was developed for the rapid preparation of ionic liquid-functionalized hybrid monolithic column based on polyhedral oligomeric silsesquioxane (POSS). "One-pot" polymerization was realized in the UV-transparent fused-silica capillary by using octanethiol, 1-allyl-3-methylimidazolium hexafluorophosphate as functional monomers and methacryl-substituted POSS as a crosslinker. The thiol-vinyl-methacrylate ternary system uniquely exhibits a mixed step-chain growth polymerization regime that combining the thiol-ene reaction and free-radical reaction mechanisms, which provides a simple route to prepare novel POSS-based functionalized hybrid monoliths. The pore property, permeability, and electroosmotic flow (EOF) of the hybrid monoliths can be tailored by proper adjustment of the feeding composition and initiation condition. Morphologic and spectroscopic characterizations of monolithic columns clearly indicate that utilization of the photo-initiated approach in thiol-vinyl polymerization can generate a more homogeneous porous structure, smaller domain size and higher column efficiency (53,800-60,300 plates/m for alkylbenzenes) than the thermally-initiated one (32,800-49,300 plates/m). Significant improvements in mechanical stability, anti-swelling property and tailorability of hybrid polymer were achieved in a simple manner, owing to the photopolymerization of rigid nanoscale POSS units and imidazolium-based ionic liquids in ternary thiol-vinyl system for the first time. The resulting hybrid monolith possessed controllable EOFs at pH values from 2 to 10, and showed a multimode separation mechanism in capillary electrochromatography, including π-π interaction, ion exchange, electrophoretic migration, electrostatic and hydrophobic interaction. Satisfactory separation ability was achieved for the analysis of different types of small molecules.

Preparation and evaluation of highly hydrophilic aptamer-based hybrid affinity monolith for on-column specific discrimination of ochratoxin A

Nonspecific adsorption is a challenge of specific recognition on aptamer-based affinity monoliths. Here, a novel highly hydrophilic polyhedral oligomeric silsesquioxane (POSS)-containing aptamer-based hybrid-silica affinity monolith with a good recognition nature was prepared and used for specific discrimination of ochratoxin A (OTA). A homogeneous polymerization mixture consisted of POSS chemicals, hydrophilic monomers and aptamer solution was directly polymerized via the "one-pot" method. Preparation and characterization of the resultant affinity monolith were studied in detail. A highly hydrophilic nature was obtained and the typical hydrophilic interaction liquid chromatography (HILIC) was observed when acetonitrile (ACN) content in mobile phase was 25%, which reached the highest hydrophilicity of POSS-based hybrid monoliths. By using OTA as model analyte, the nonspecific adsorption was effectively suppressed. The recovery of the analogue ochratoxin B (OTB) was only about 0.1% even if the content of OTB was 50 times more than OTA, which was much better than other POSS-containing monoliths and polar siloxane-based hybrid monoliths. Applied to beer samples, the adsorption of background materials was drastically resisted, and efficient recognition of OTA was obtained with the recoveries of 94.9-99.8%. Much less disturbance was observed than that occurred in hydrophobic POSS-based affinity monolith. It lights an attractive implement with high hydrophilicity and specificity for online selective recognition of OTA.

One pot synthesis of carboxyl functionalized-polyhedral oligomeric siloxane based monolith via photoinitiated thiol-methacrylate polymerization for nano-hydrophilic interaction chromatography

A hybrid monolith exhibiting almost retention independent separation performance in hydrophilic interaction chromatography (HILIC) was obtained by one-pot photoinitiated thiol-methacrylate polymerization. Polyhedral oligomeric silsesquioxane containing methacrylate units (POSS-MA) was used as the main monomer and crosslinking agent, together with a hydrophilic ligand with two carboxyl groups, mercaptosuccinic acid (MSA) as the thiol agent and chromatographic ligand. The isocratic separation of nucleosides, nucleotides and organic acids on MSA attached-poly(POSS-MA) monolith was investigated in HILIC mode. The van-Deemter plots for obtained for nucleosides, nucleotides and benzoic acids clearly showed that there were two regions in each graph with two different slopes in the studied range of linear flow rate (i.e. 0.2-4.3mm/s). The slope of plate height-linear velocity curve was so small in the low linear velocity region between 0.2-2.1mm/s while the slope in high linear velocity region between 2.1-4.3mm/s was so higher with respect to the first region. The van-Deemter plots sketched for all analyte grous used in HILIC mode obeyed this tendency Almost "retention independent plate height behavior" was demonstrated in HILIC, using nucleotides, nucleotides or benzoic acids as the analytes in the linear velocity range of 0.2-2.1mm/s. This behavior was explained by the porous structure of the synthesized monolith facilitating the convective transport of analytes. The variation of plate height was not retention-independent within high linear velocity range (>3.2mm/s) when nucleosides were separated in HILIC mode.

Novel in-capillary polymeric monoliths arising from glycerol carbonate methacrylate for flow-through catalytic and chromatographic applications

In-capillary reactive polymer monoliths have been prepared from glycerol carbonate methacrylate functional monomer, suitably functionalized and further applied to separation science and flow-through catalysis, respectively.