1
|
Partanen L, Laasonen K. Ab initio molecular dynamics investigation of the Pt(111)-water interface structure in an alkaline environment with high surface OH-coverages. Phys Chem Chem Phys 2024; 26:18233-18243. [PMID: 38904188 DOI: 10.1039/d4cp01100g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
Abstract
In this study, we investigate the structure of the Pt(111)-water interface in an alkaline environment with large OH coverages of 1/3, 2/3 and 1 monolayer using a large well-equilibrated system. We observe that the OH coverage influences both the orientational distribution of the water molecules and their density, with more structure associated with higher coverage. At the same time, there is evidence of a highly dynamic hydrogen bond network on the lower coverage systems with substantial exchange of water between the surface and the solvent. In addition to OH and H2O species, which are preferentially located at the top sites, the 1/3 and 2/3 monolayer surfaces also contain O atoms, which are relatively stable and prefer the hollow sites. In contrast, the 1 monolayer surface shows none of these dynamics, and is unlikely to be active. The dynamic coexistence of O, OH and H2O on Pt(111) electrodes in alkaline conditions necessitates the investigation of several possible reaction paths for processess like ORR and water splitting. Finally, the exchange processes observed between the solvent and the interface underscore the need to explicitly include liquid water in simulations of systems similar to Pt(111).
Collapse
Affiliation(s)
- Lauri Partanen
- Department of Chemistry and Materials Science, Aalto University, P.O. Box 16100, FI-00076 Aalto, Finland.
| | - Kari Laasonen
- Department of Chemistry and Materials Science, Aalto University, P.O. Box 16100, FI-00076 Aalto, Finland.
| |
Collapse
|
2
|
Mandal I, Karimova NV, Zakai I, Gerber RB. Formation of Chlorine in the Atmosphere by Reaction of Hypochlorous Acid with Seawater. J Phys Chem Lett 2024; 15:432-438. [PMID: 38189241 PMCID: PMC11139381 DOI: 10.1021/acs.jpclett.3c03035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 12/16/2023] [Accepted: 12/20/2023] [Indexed: 01/09/2024]
Abstract
The highly reactive dihalogens play a significant role in the oxidative chemistry of the troposphere. One of the main reservoirs of these halogens is hypohalous acids, HOX, which produce dihalogens in the presence of halides (Y-), where X, Y = Cl, Br, I. These reactions occur in and on aerosol particles and seawater surfaces and have been studied experimentally and by field observations. However, the mechanisms of these atmospheric reactions are still unknown. Here, we establish the atomistic mechanism of HOCl + Cl- → Cl2 + OH- at the surface of the water slab by performing ab initio molecular dynamics (AIMD) simulations. Main findings are (1) This reaction proceeds by halogen-bonded complexes of (HOCl)···(Cl-)aq surrounded with the neighboring water molecules. (2) The halogen bonded (HOCl)···(Cl-)aq complexes undergo charge transfer from Cl- to OH- to form transient Cl2 at neutral pH. (3) The addition of a proton to one proximal water greatly facilitates the Cl2 formation, which explains the enhanced rate at low pH.
Collapse
Affiliation(s)
- Imon Mandal
- The
Fritz Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Natalia V. Karimova
- Department
of Chemistry, University of California, Irvine, California 92697, United States
| | - Itai Zakai
- The
Fritz Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - R. Benny Gerber
- The
Fritz Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
- Department
of Chemistry, University of California, Irvine, California 92697, United States
| |
Collapse
|
3
|
Roet S, Daub CD, Riccardi E. Chemistrees: Data-Driven Identification of Reaction Pathways via Machine Learning. J Chem Theory Comput 2021; 17:6193-6202. [PMID: 34555907 PMCID: PMC8515787 DOI: 10.1021/acs.jctc.1c00458] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
![]()
We propose to analyze
molecular dynamics (MD) output via a supervised machine
learning (ML) algorithm, the decision tree.
The approach aims to identify the predominant geometric features which
correlate with trajectories that transition between two arbitrarily
defined states. The data-driven algorithm aims to identify these features
without the bias of human “chemical intuition”. We demonstrate
the method by analyzing the proton exchange reactions in formic acid
solvated in small water clusters. The simulations were performed with ab initio MD combined with a method to efficiently sample
the rare event, path sampling. Our ML analysis identified relevant
geometric variables involved in the proton transfer reaction and how
they may change as the number of solvating water molecules changes.
Collapse
Affiliation(s)
- Sander Roet
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 5, 7491 Trondheim, Norway
| | - Christopher D Daub
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Enrico Riccardi
- Department of Informatics, UiO, Gaustadalléen 23B, 0373 Oslo, Norway
| |
Collapse
|
4
|
Ab initio metadynamics calculations reveal complex interfacial effects in acetic acid deprotonation dynamics. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115624] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
|
5
|
Pérez de Tudela R, Marx D. Generating Excess Protons in Microsolvated Acid Clusters under Ambient Conditions: An Issue of Configurational Entropy versus Internal Energy. Chemistry 2020; 26:11955-11959. [PMID: 32080914 PMCID: PMC7540491 DOI: 10.1002/chem.202000864] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Indexed: 11/29/2022]
Abstract
Acid dissociation, and thus liberation of excess protons in small water droplets, impacts on diverse fields such as interstellar, atmospheric or environmental chemistry. At cryogenic temperatures below 1 K, it is now well established that as few as four water molecules suffice to dissociate the generic strong acid HCl, yet temperature-driven recombination sets in simply upon heating that cluster. Here, the fundamental question is posed of how many more water molecules are required to stabilize a hydrated excess proton at room temperature. Ab initio path integral simulations disclose that not five, but six water molecules are needed at 300 K to allow for HCl dissociation independently from nuclear quantum effects. In order to provide the molecular underpinnings of these observations, the classical and quantum free energy profiles were decomposed along the dissociation coordinate in terms of the corresponding internal energy and entropy profiles. What decides in the end about acid dissociation, and thus ion pair formation, in a specific microsolvated water cluster at room temperature is found to be a fierce competition between classical configurational entropy and internal energy, where the former stabilizes the undissociated state whereas the latter favors dissociation. It is expected that these are generic findings with broad implications on acid-base chemistry depending on temperature in small water assemblies.
Collapse
Affiliation(s)
| | - Dominik Marx
- Lehrstuhl für Theoretische ChemieRuhr-Universität Bochum44780BochumGermany
| |
Collapse
|
6
|
Ruiz-Lopez MF, Francisco JS, Martins-Costa MTC, Anglada JM. Molecular reactions at aqueous interfaces. Nat Rev Chem 2020; 4:459-475. [PMID: 37127962 DOI: 10.1038/s41570-020-0203-2] [Citation(s) in RCA: 144] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/02/2020] [Indexed: 12/16/2022]
Abstract
This Review aims to critically analyse the emerging field of chemical reactivity at aqueous interfaces. The subject has evolved rapidly since the discovery of the so-called 'on-water catalysis', alluding to the dramatic acceleration of reactions at the surface of water or at its interface with hydrophobic media. We review critical experimental studies in the fields of atmospheric and synthetic organic chemistry, as well as related research exploring the origins of life, to showcase the importance of this phenomenon. The physico-chemical aspects of these processes, such as the structure, dynamics and thermodynamics of adsorption and solvation processes at aqueous interfaces, are also discussed. We also present the basic theories intended to explain interface catalysis, followed by the results of advanced ab initio molecular-dynamics simulations. Although some topics addressed here have already been the focus of previous reviews, we aim at highlighting their interconnection across diverse disciplines, providing a common perspective that would help us to identify the most fundamental issues still incompletely understood in this fast-moving field.
Collapse
|
7
|
Biswas S, Kwon H, Barsanti KC, Myllys N, Smith JN, Wong BM. Ab initio metadynamics calculations of dimethylamine for probing pKb variations in bulk vs. surface environments. Phys Chem Chem Phys 2020; 22:26265-26277. [DOI: 10.1039/d0cp03832f] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Free energy landscape obtained from ab initio metadynamics calculations for dimethylamine protonation at the air–water interface.
Collapse
Affiliation(s)
- Sohag Biswas
- Department of Chemical & Environmental Engineering
- University of California-Riverside
- Riverside
- USA
| | - Hyuna Kwon
- Department of Chemical & Environmental Engineering
- University of California-Riverside
- Riverside
- USA
| | - Kelley C. Barsanti
- Department of Chemical & Environmental Engineering
- University of California-Riverside
- Riverside
- USA
| | - Nanna Myllys
- Department of Chemistry
- University of California-Irvine
- Irvine
- USA
| | - James N. Smith
- Department of Chemistry
- University of California-Irvine
- Irvine
- USA
| | - Bryan M. Wong
- Department of Chemical & Environmental Engineering
- University of California-Riverside
- Riverside
- USA
- Materials Science & Engineering Program
| |
Collapse
|
8
|
Christensen EG, Steele RP. Probing the Partial Activation of Water by Open-Shell Interactions, Cl(H 2O) 1-4. J Phys Chem A 2019; 123:8657-8673. [PMID: 31513400 DOI: 10.1021/acs.jpca.9b07235] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The partial chemical activation of water by reactive radicals was examined computationally for small clusters of chlorine and water, Cl•(H2O)n=1-4. Using an automated isomer-search procedure, dozens of unique, stable structures were computed. Among the resulting structural classes were intact, hydrated-chlorine isomers, as well as hydrogen-abstracted (HCl)(OH)(H2O)n-1 configurations. The latter showed increased stability as the degree of hydration increased, until n = 4, where a new class of structures was discovered with a chloride ion bound to an oxidized water network. The electronic structure of these three structural classes was investigated, and spectral signatures of this hydration-based evolution were connected to these electronic properties. An ancillary outcome of this detailed computational analysis, including coupled-cluster benchmarks, was the calibration of cost-effective quantum chemistry methods for future studies of these radical-water complexes.
Collapse
Affiliation(s)
- Elizabeth G Christensen
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry , University of Utah , 315 South 1400 East , Salt Lake City , Utah 84112 , United States
| | - Ryan P Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry , University of Utah , 315 South 1400 East , Salt Lake City , Utah 84112 , United States
| |
Collapse
|
9
|
Hänninen V, Murdachaew G, Nathanson GM, Gerber RB, Halonen L. Ab initio molecular dynamics studies of formic acid dimer colliding with liquid water. Phys Chem Chem Phys 2018; 20:23717-23725. [PMID: 30191926 DOI: 10.1039/c8cp03857k] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ab initio molecular dynamics simulations of formic acid (FA) dimer colliding with liquid water at 300 K have been performed using density functional theory. The two energetically lowest FA dimer isomers were collided with a water slab at thermal and high kinetic energies up to 68kBT. Our simulations agree with recent experimental observations of nearly a complete uptake of gas-phase FA dimer: the calculated average kinetic energy of the dimers immediately after collision is 5 ± 4% of the incoming kinetic energy, which compares well with the experimental value of 10%. Simulations support the experimental observation of no delayed desorption of FA dimers following initial adsorption. Our analysis shows that the FA dimer forms hydrogen bonds with surface water molecules, where the hydrogen bond order depends on the dimer structure, such that the most stable isomer possesses fewer FA-water hydrogen bonds than the higher energy isomer. Nevertheless, even the most stable isomer can attach to the surface through one hydrogen bond despite its reduced hydrophilicity. Our simulations further show that the probability of FA dimer dissociation is increased by high collision energies, the dimer undergoes isomerization from the higher energy to the lowest energy isomer, and concerted double-proton transfer occurs between the FA monomers. Interestingly, proton transfer appears to be driven by the release of energy arising from such isomerization, which stimulates those internal vibrational degrees of freedom that overcome the barrier of a proton transfer.
Collapse
Affiliation(s)
- Vesa Hänninen
- Department of Chemistry, University of Helsinki, P. O. Box 55 (A.I. Virtasen aukio 1), FI-00014, Finland.
| | | | | | | | | |
Collapse
|
10
|
Hirshberg B, Gerber RB, Krylov AI. Autocorrelation of electronic wave-functions: a new approach for describing the evolution of electronic structure in the course of dynamics. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1464675] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Barak Hirshberg
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , Jerusalem, Israel
| | - R. Benny Gerber
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry , Jerusalem, Israel
- Department of Chemistry, University of California , Irvine, CA, USA
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California , Los Angeles, CA, USA
| |
Collapse
|
11
|
Hirshberg B, Rossich Molina E, Götz AW, Hammerich AD, Nathanson GM, Bertram TH, Johnson MA, Gerber RB. N2O5at water surfaces: binding forces, charge separation, energy accommodation and atmospheric implications. Phys Chem Chem Phys 2018; 20:17961-17976. [DOI: 10.1039/c8cp03022g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Studying the interactions between N2O5and water in nano-sized clusters, in bulk and on the surface of water.
Collapse
Affiliation(s)
- Barak Hirshberg
- The Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics
- the Hebrew University
- Jerusalem 9190401
- Israel
| | - Estefanía Rossich Molina
- The Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics
- the Hebrew University
- Jerusalem 9190401
- Israel
| | - Andreas W. Götz
- San Diego Supercomputer Center
- University of California
- San Diego, La Jolla
- USA
| | | | | | | | | | - R. Benny Gerber
- The Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics
- the Hebrew University
- Jerusalem 9190401
- Israel
- Department of Chemistry, University of California, Irvine
| |
Collapse
|
12
|
Murdachaew G, Nathanson GM, Benny Gerber R, Halonen L. Deprotonation of formic acid in collisions with a liquid water surface studied by molecular dynamics and metadynamics simulations. Phys Chem Chem Phys 2016; 18:29756-29770. [DOI: 10.1039/c6cp06071d] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Formic acid has a lower barrier to deprotonation at the air–water interface than in bulk liquid water.
Collapse
Affiliation(s)
- Garold Murdachaew
- Laboratory of Physical Chemistry
- Department of Chemistry
- FI-00014 University of Helsinki
- Finland
| | | | - R. Benny Gerber
- Laboratory of Physical Chemistry
- Department of Chemistry
- FI-00014 University of Helsinki
- Finland
- Institute of Chemistry and the Fritz Haber Research Center
| | - Lauri Halonen
- Laboratory of Physical Chemistry
- Department of Chemistry
- FI-00014 University of Helsinki
- Finland
| |
Collapse
|
13
|
Faust JA, Nathanson GM. Microjets and coated wheels: versatile tools for exploring collisions and reactions at gas–liquid interfaces. Chem Soc Rev 2016; 45:3609-20. [DOI: 10.1039/c6cs00079g] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Scattering experiments using liquid microjets provide a window into collisions and reactions at the surfaces of high vapor pressure liquids.
Collapse
|