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Wilson AD, Foo ZH, Jayasinghe AS, Stetson C, Lee H, Rollins HW, Deshmukh A, Lienhard JH. Modeling Henry's law and phase separations of water-NaCl-organic mixtures with solvation and ion-pairing. Phys Chem Chem Phys 2024; 26:749-759. [PMID: 37800279 DOI: 10.1039/d3cp02003g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/07/2023]
Abstract
Empirical measurements of solution vapor pressure of ternary acetonitrile (MeCN) H2O-NaCl-MeCN mixtures were recorded, with NaCl concentrations ranging from zero to the saturation limit, and MeCN concentrations ranging from zero to an absolute mole fraction of 0.64. After accounting for speciation, the variability of the Henry's law coefficient at vapor-liquid equilibrium (VLE) of MeCN ternary mixtures decreased from 107% to 5.1%. Solute speciation was modeled using a mass action solution model that incorporates solute solvation and ion-pairing phenomena. Two empirically determined equilibrium constants corresponding to solute dissociation and ion pairing were utilized for each solute. When speciation effects were considered, the solid-liquid equilibrium of H2O-NaCl-MeCN mixtures appear to be governed by a simple saturation equilibrium constant that is consistent with the binary H2O-NaCl saturation coefficient. Further, our results indicate that the precipitation of NaCl in the MeCN ternary mixtures was not governed by changes in the dielectric constant. Our model indicates that the compositions of the salt-induced liquid-liquid equilibrium (LLE) boundary of the H2O-NaCl-MeCN mixture correspond to the binary plateau activity of MeCN, a range of concentrations over which the activity remains largely invariant in the binary water-MeCN system. Broader comparisons with other ternary miscible organic solvent (MOS) mixtures suggest that salt-induced liquid-liquid equilibrium exists if: (1) the solution displays a positive deviation from the ideal limits governed by Raoult's law; and (2) the minimum of the mixing free energy profile for the binary water-MOS system is organic-rich. This work is one of the first applications of speciation-based solution models to a ternary system, and the first that includes an organic solute.
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Affiliation(s)
- Aaron D Wilson
- Chemical Separations Group, Idaho National Laboratory, Idaho Falls, ID 83415-2208, USA.
| | - Zi Hao Foo
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139-4307, USA
| | - Ashini S Jayasinghe
- Analytical Chemistry Group, Idaho National Laboratory, Idaho Falls, ID 83415-2208, USA
| | - Caleb Stetson
- Chemical Separations Group, Idaho National Laboratory, Idaho Falls, ID 83415-2208, USA.
| | - Hyeonseok Lee
- Chemical Separations Group, Idaho National Laboratory, Idaho Falls, ID 83415-2208, USA.
| | - Harry W Rollins
- Chemical Separations Group, Idaho National Laboratory, Idaho Falls, ID 83415-2208, USA.
| | - Akshay Deshmukh
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139-4307, USA
| | - John H Lienhard
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139-4307, USA
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2
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Yadav K, Sardana D, Shweta H, Clovis NS, Sen S. Molecular Picture of the Effect of Cosolvent Crowding on Ligand Binding and Dispersed Solvation Dynamics in G-Quadruplex DNA. J Phys Chem B 2022; 126:1668-1681. [PMID: 35170968 DOI: 10.1021/acs.jpcb.1c09349] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Understanding molecular interactions and dynamics of proteins and DNA in a cell-like crowded environment is crucial for predicting their functions within the cell. Noncanonical G-quadruplex DNA (GqDNA) structures adopt various topologies that were shown to be strongly affected by molecular crowding. However, it is unknown how such crowding affects the solvation dynamics in GqDNA. Here, we study the effect of cosolvent (acetonitrile) crowding on ligand (DAPI) solvation dynamics within human telomeric antiparallel GqDNA through direct comparison of time-resolved fluorescence Stokes shift (TRFSS) experiments and molecular dynamics (MD) simulations results. We show that ligand binding affinity to GqDNA is drastically affected by acetonitrile (ACN). Solvation dynamics probed by DAPI in GqDNA groove show dispersed dynamics from ∼100 fs to 10 ns in the absence and presence of 20% and 40% (v/v) ACN. The nature of dynamics remain similar in buffer and 20% ACN, although in 40% ACN, distinct dynamics is observed in <100 ps. MD simulations performed on GqDNA/DAPI complex reveal preferential solvation of ligand by ACN, particularly in 40% ACN. Simulated solvation time-correlation functions calculated from MD trajectories compare very well to the overall solvation dynamics of DAPI in GqDNA, observed in experiments. Linear response decomposition of simulated solvation correlation functions unfolds the origin of dispersed dynamics, showing that the slower dynamics is dominated by DNA-motion in the presence of ACN (and also by the ACN dynamics at higher concentration). However, water-DNA coupled motion controls the slow dynamics in the absence of ACN. Our data, thus, unravel a detailed molecular picture showing that though ACN crowding affect ligand binding affinity to GqDNA significantly, the overall dispersed solvation dynamics in GqDNA remain similar in the absence and the presence of 20% ACN, albeit with a small effect on the dynamics in the presence of 40% ACN due to preferential solvation of ligand by ACN.
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Affiliation(s)
- Kavita Yadav
- Spectroscopy Laboratory, School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Deepika Sardana
- Spectroscopy Laboratory, School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Him Shweta
- Spectroscopy Laboratory, School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Ndege Simisi Clovis
- Spectroscopy Laboratory, School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Sobhan Sen
- Spectroscopy Laboratory, School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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Mishra K, Acharjee D, Das A, Ghosh S. Subpicosecond Hot Hole Transfer in a Graphene Quantum Dot Composite with High Efficiency. J Phys Chem Lett 2022; 13:606-613. [PMID: 35019662 DOI: 10.1021/acs.jpclett.1c03530] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Extraction of hot carriers is of prime importance because of its potential to overcome the energy loss that limits the efficiency of an optoelectronic device. Employing a femtosecond upconversion setup, herein we report a few picoseconds carrier cooling time of colloidal graphene quantum dots (GQDs) is at least an order of magnitude slower compared to that in its bulk form. A slower carrier cooling time of GQDs compared to that of the other semiconductor quantum dots and their bulk materials is indeed a coveted property of GQDs that would allow one easy harvesting of high energy species employing a suitable molecular system as shown in this study. A subpicosecond hot hole transfer time scale has been achieved in a GQD-molecular system composite with high transfer efficiency. Our finding suggests a dramatic enhancement of the efficiency of GQD based optoelectronic devices can possibly be a reality.
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Affiliation(s)
- Krishna Mishra
- School of Chemical Sciences, National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI), Khurda 752050, Odisha, India
| | - Debopam Acharjee
- School of Chemical Sciences, National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI), Khurda 752050, Odisha, India
| | - Ayendrila Das
- School of Chemical Sciences, National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI), Khurda 752050, Odisha, India
| | - Subhadip Ghosh
- School of Chemical Sciences, National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI), Khurda 752050, Odisha, India
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4
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Homocianu M. Optical properties of solute molecules: Environmental effects, challenges, and their practical implications. Microchem J 2021. [DOI: 10.1016/j.microc.2020.105797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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5
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Nagasaka M, Yuzawa H, Kosugi N. Microheterogeneity in Aqueous Acetonitrile Solution Probed by Soft X-ray Absorption Spectroscopy. J Phys Chem B 2020; 124:1259-1265. [PMID: 31990199 DOI: 10.1021/acs.jpcb.0c00551] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Chemical processes in solution are influenced by microheterogeneity (MH), where two liquids seem to be mixed in a macroscopic scale but are microscopically inhomogeneous. We have investigated one of the simplest MH systems, aqueous acetonitrile solution, using soft X-ray absorption spectroscopy (XAS). Molecular interactions of acetonitrile were revealed by C and N K-edge XAS at different concentrations, and those of solvent water were separately revealed by O K-edge XAS. The energy shift of the C≡N π* peak at the C K-edge shows three characteristic concentration regions and a phase-transition-like behavior between them. By comparing the energy shifts in XAS spectra with ab initio quantum chemical inner-shell calculations, we have determined local structures of acetonitrile-water mixtures in three concentration regions and found that the dipole interaction between acetonitrile and water is the key structure to emerge the MH state in the middle concentration region.
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Affiliation(s)
- Masanari Nagasaka
- Institute for Molecular Science , Myodaiji, Okazaki 444-8585 , Japan.,SOKENDAI (The Graduate University for Advanced Studies) , Myodaiji, Okazaki 444-8585 , Japan
| | - Hayato Yuzawa
- Institute for Molecular Science , Myodaiji, Okazaki 444-8585 , Japan
| | - Nobuhiro Kosugi
- Institute for Molecular Science , Myodaiji, Okazaki 444-8585 , Japan.,SOKENDAI (The Graduate University for Advanced Studies) , Myodaiji, Okazaki 444-8585 , Japan
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Lynch D, O'Mahony RM, McCarthy DG, Bateman LM, Collins SG, Maguire AR. Mechanistic Study of In Situ Generation and Use of Methanesulfonyl Azide as a Diazo Transfer Reagent with Real-Time Monitoring by FlowNMR. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900184] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Denis Lynch
- School of Chemistry; Analytical and Biological Chemistry Research Facility, Synthesis and Solid State Pharmaceutical Centre; University College Cork; Ireland
| | - Rosella M. O'Mahony
- School of Chemistry; Analytical and Biological Chemistry Research Facility, Synthesis and Solid State Pharmaceutical Centre; University College Cork; Ireland
| | - Daniel G. McCarthy
- School of Chemistry; Analytical and Biological Chemistry Research Facility, Synthesis and Solid State Pharmaceutical Centre; University College Cork; Ireland
| | - Lorraine M. Bateman
- School of Chemistry and School of Pharmacy; Analytical and Biological Chemistry Research Facility, Synthesis and Solid State Pharmaceutical Centre; University College Cork; Ireland
| | - Stuart G. Collins
- School of Chemistry; Analytical and Biological Chemistry Research Facility, Synthesis and Solid State Pharmaceutical Centre; University College Cork; Ireland
| | - Anita R. Maguire
- School of Chemistry and School of Pharmacy; Analytical and Biological Chemistry Research Facility, Synthesis and Solid State Pharmaceutical Centre; University College Cork; Ireland
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Mishra K, Koley S, Ghosh S. Ground-State Heterogeneity along with Fluorescent Byproducts Causes Excitation-Dependent Fluorescence and Time-Dependent Spectral Migration in Citric Acid-Derived Carbon Dots. J Phys Chem Lett 2019; 10:335-345. [PMID: 30607959 DOI: 10.1021/acs.jpclett.8b03803] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The integrity of fluorescent carbon dot (FCD) emission deserves its highest appreciation when sample purification is performed with extreme care. Several controversial phenomena of FCD fluorescence including excitation-dependent emission, spectral migration with time, and thereby violation of the Kasha-Vavilov rule, which sparked intense debate during recent reports, disappeared when we rigorously purified the as-synthesized FCD sample. Purification was performed by first visual silica column chromatography (observing the emissions under UV illumination) and subsequently prolonged membrane dialysis. Most of the surprising phenomena of FCD fluorescence reported earlier apparently arose from ground-state spectral heterogeneity of FCD sample containing a large amount of fluorescent impurities (mostly polymeric or oligomeric in nature). Observation of our ensemble spectroscopic measurements, albeit nicely matched with recent reports based on single-particle experiments, differed largely from that of other ensemble measurements. Our results reconciled a number of long-standing controversies on FCD emission mostly by emphasizing the urgency of sample purification with more scientific rigor.
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Affiliation(s)
- Krishna Mishra
- School of Chemical Sciences , National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI) , Khurda 752050 , Odisha India
| | - Somnath Koley
- School of Chemical Sciences , National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI) , Khurda 752050 , Odisha India
| | - Subhadip Ghosh
- School of Chemical Sciences , National Institute of Science Education and Research, Homi Bhabha National Institute (HBNI) , Khurda 752050 , Odisha India
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Duereh A, Sato Y, Smith RL, Inomata H. Correspondence between Spectral-Derived and Viscosity-Derived Local Composition in Binary Liquid Mixtures Having Specific Interactions with Preferential Solvation Theory. J Phys Chem B 2018; 122:10894-10906. [PMID: 30403857 DOI: 10.1021/acs.jpcb.8b09511] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Local interactions between unlike molecules (1-2) in solution are commonly measured with spectroscopy and used to estimate local composition. Herein, a viscosity model based on preferential solvation (PS) theory is developed for aqueous and nonaqueous binary liquid mixtures containing a dipolar aprotic solvent that provides local composition considering the hydration or solvation shell around complex (1-2) molecules. Spectral-derived and viscosity-derived local composition distributions showed similar trends with bulk composition, and their correspondence is attributed to characteristics of the hydration or solvation shell. Viscosity-derived local compositions were consistent with literature molecular simulations, whereas spectral-derived local composition distributions contained artifacts. The PS viscosity model is also applicable to nonpolar-polar mixtures for which self-association occurs, and it can be used to estimate solvent mixture dipolarity/polarizability. Since the PS viscosity model only requires bulk viscosity, it may provide a means to estimate microviscosity or the solvent environment around biomolecules.
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Panda MR, Koley S, Mishra K, Ghosh S. Probing of Reorganization Dynamics within the Different Phases of Themotropic Liquid Crystals. ChemistrySelect 2018. [DOI: 10.1002/slct.201702944] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Manas Ranjan Panda
- School of Chemical Sciences; National Institute of Science Education and Research, HBNI; Khurda - 752050, Odisha India
| | - Somnath Koley
- School of Chemical Sciences; National Institute of Science Education and Research, HBNI; Khurda - 752050, Odisha India
| | - Krishna Mishra
- School of Chemical Sciences; National Institute of Science Education and Research, HBNI; Khurda - 752050, Odisha India
| | - Subhadip Ghosh
- School of Chemical Sciences; National Institute of Science Education and Research, HBNI; Khurda - 752050, Odisha India
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Koley S, Panda MR, Bharadwaj K, Ghosh S. Spectroscopic and Calorimetric Studies of Molecular Recognitions in a Dendrimer-Surfactant Complex. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:817-825. [PMID: 28505448 DOI: 10.1021/acs.langmuir.7b01081] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Molecular recognitions, causing supramolecular complex formation between a hyperbranched polymer molecule (polyamidoamine (PAMAM) dendrimer generation 3) with oppositely charged surfactant sodium dodecyl sulfate (SDS) in aqueous solution, were studied by using various spectroscopic techniques and calorimetric titration of heat change measurements. Spectroscopic measurements were performed using dynamic Stokes shift (DSS), rotational anisotropy decay, and translational diffusion of a fluorescent probe molecule coumarin 153 (C153) noncovalently attached to the dendrimer-surfactant complex. All these studies unanimously confirm that the critical aggregation concentration (CAC) of SDS falls to ∼0.8 mM (from its critical micelle concentration (CMC) ∼ 8 mM) in the presence of ∼0.2 mM dendrimer. Further studies of isothermal titration calorimetry (ITC) measurement show that the CAC of SDS in the presence of dendrimer remains invariant to the dendrimer concentration. Complexation reaction between SDS and dendrimer is highly exothermic in nature. A maximum heat release (ΔH∼ -6.6 kJ/mol of SDS binding) was observed at a SDS-to-dendrimer mole ratio of ∼3-5; where up to 3 to 5 SDS molecules were encapsulated by one dendrimer molecule to form dendrimer-SDS encapsulation complex. When negatively charged SDS was replaced with a positively charged surfactant dodecyl-trimethylammonium-bromide (DTAB), we found that the DTAB hardly interacted with positively charged dendrimer due to the charge-charge repulsions.
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Affiliation(s)
- Somnath Koley
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI , Khurda-752050, Odisha, India
| | - Manas Ranjan Panda
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI , Khurda-752050, Odisha, India
| | - Kiran Bharadwaj
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI , Khurda-752050, Odisha, India
| | - Subhadip Ghosh
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI , Khurda-752050, Odisha, India
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11
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Koley S, Ghosh S. Encapsulation and Residency of a Hydrophobic Dye within the Water-Filled Interior of a PAMAM Dendrimer Molecule. J Phys Chem B 2017; 121:1930-1940. [DOI: 10.1021/acs.jpcb.6b10176] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Somnath Koley
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI, Khurda 752050, Odisha, India
| | - Subhadip Ghosh
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI, Khurda 752050, Odisha, India
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